Wall clock time and date at job start Mon Mar 30 2020 05:42:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.46895 * 2 1 4 4 C 1.50700 * 109.46757 * 179.97438 * 3 2 1 5 5 C 1.38131 * 120.03653 * 265.25132 * 4 3 2 6 6 C 1.38260 * 120.07073 * 180.27624 * 5 4 3 7 7 C 1.38305 * 120.15328 * 359.74696 * 6 5 4 8 8 C 1.38083 * 120.07622 * 359.97438 * 7 6 5 9 9 C 1.38893 * 120.03825 * 84.99966 * 4 3 2 10 10 N 1.39674 * 120.07307 * 0.02562 * 9 4 3 11 11 C 1.46504 * 119.99907 * 179.72666 * 10 9 4 12 12 H 1.09008 * 109.46847 * 324.99551 * 11 10 9 13 13 C 1.50698 * 109.46820 * 205.00081 * 11 10 9 14 14 H 1.07995 * 120.00485 * 359.97438 * 13 11 10 15 15 C 1.37880 * 119.99796 * 180.02562 * 13 11 10 16 16 N 1.31514 * 119.99726 * 359.97438 * 15 13 11 17 17 Si 1.86799 * 120.00037 * 179.97438 * 15 13 11 18 18 H 1.48494 * 109.47213 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.46909 * 119.99481 * 17 15 13 20 20 H 1.48501 * 109.46992 * 239.99341 * 17 15 13 21 21 C 1.52997 * 109.47349 * 84.99393 * 11 10 9 22 22 C 1.53000 * 109.47060 * 295.00344 * 21 11 10 23 23 H 1.08997 * 109.46986 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47412 * 300.00541 * 1 2 3 25 25 H 1.09001 * 109.46596 * 60.00476 * 1 2 3 26 26 H 1.08994 * 109.47166 * 239.99926 * 2 1 3 27 27 H 1.09001 * 109.46596 * 119.99524 * 2 1 3 28 28 H 1.08997 * 109.47532 * 59.99533 * 3 2 1 29 29 H 1.08997 * 109.46672 * 299.99814 * 3 2 1 30 30 H 1.08002 * 119.96297 * 0.02562 * 5 4 3 31 31 H 1.08003 * 119.92243 * 179.76540 * 6 5 4 32 32 H 1.08009 * 119.96488 * 179.97438 * 7 6 5 33 33 H 1.07994 * 120.04039 * 180.02562 * 8 7 6 34 34 H 0.97001 * 120.00508 * 359.71927 * 10 9 4 35 35 H 0.97005 * 120.00053 * 180.02562 * 16 15 13 36 36 H 1.09002 * 109.47153 * 175.00025 * 21 11 10 37 37 H 1.09001 * 109.46832 * 55.00216 * 21 11 10 38 38 H 1.08992 * 109.47399 * 59.99823 * 22 21 11 39 39 H 1.09004 * 109.46724 * 180.02562 * 22 21 11 40 40 H 1.09001 * 109.47194 * 299.99650 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 6 4.2379 1.5417 1.1926 6 6 5.6205 1.5474 1.1935 7 6 6.3165 1.4488 0.0024 8 6 5.6321 1.3436 -1.1922 9 6 4.2428 1.3375 -1.1969 10 7 3.5473 1.2323 -2.4035 11 6 4.2828 1.1277 -3.6662 12 1 5.1911 1.7277 -3.6084 13 6 3.4191 1.6313 -4.7938 14 1 2.4220 1.9927 -4.5904 15 6 3.9016 1.6296 -6.0854 16 7 5.1157 1.1890 -6.3332 17 14 2.8308 2.2532 -7.4833 18 1 1.5177 2.6896 -6.9443 19 1 3.5006 3.4011 -8.1458 20 1 2.6227 1.1641 -8.4711 21 6 4.6530 -0.3348 -3.9212 22 6 5.6298 -0.8089 -2.8432 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3632 0.5138 -0.8901 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 1.6766 1.9564 0.8899 29 1 1.6767 1.9563 -0.8900 30 1 3.6975 1.6188 2.1245 31 1 6.1583 1.6289 2.1266 32 1 7.3965 1.4540 0.0067 33 1 6.1761 1.2662 -2.1219 34 1 2.5773 1.2285 -2.4056 35 1 5.4554 1.1882 -7.2419 36 1 5.1214 -0.4255 -4.9012 37 1 3.7525 -0.9481 -3.8907 38 1 5.1615 -0.7182 -1.8632 39 1 5.8939 -1.8507 -3.0252 40 1 6.5304 -0.1956 -2.8737 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049556323.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:24 Heat of formation + Delta-G solvation = 4.587270 kcal Electronic energy + Delta-G solvation = -18449.457814 eV Core-core repulsion = 15842.091297 eV Total energy + Delta-G solvation = -2607.366517 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.30492 -35.89889 -34.80447 -32.69853 -31.29265 -30.20915 -28.90902 -26.45675 -25.65721 -23.04620 -22.08794 -21.54846 -20.19966 -19.23368 -17.24799 -16.06245 -15.62604 -14.97131 -14.60248 -14.12131 -13.82835 -13.58962 -13.43836 -13.00940 -12.98314 -12.42885 -11.95715 -11.87276 -11.62270 -11.53005 -11.30633 -11.07837 -10.94847 -10.88013 -10.66533 -10.37736 -10.29844 -10.17859 -10.09351 -9.65419 -9.24893 -8.93807 -8.45106 -8.09885 -6.39734 -6.16760 -4.24867 2.03563 2.32913 3.20900 3.29332 3.32463 4.25870 4.49649 4.64035 5.14821 5.17492 5.19349 5.35113 5.47821 5.62437 5.72844 5.75894 6.00253 6.02684 6.05968 6.16889 6.18915 6.25067 6.33040 6.44465 6.48041 6.53853 6.58962 6.69155 6.92778 6.99006 7.09466 7.14505 7.24628 7.24907 7.46067 7.60937 7.71258 7.85325 8.10072 8.40570 8.74062 8.93437 9.42311 10.88394 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.020077 B = 0.007272 C = 0.006013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.324276 B = 3849.542052 C = 4655.311319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.066 4.066 4 C -0.186 4.186 5 C -0.073 4.073 6 C -0.205 4.205 7 C -0.081 4.081 8 C -0.200 4.200 9 C 0.242 3.758 10 N -0.722 5.722 11 C 0.273 3.727 12 H 0.039 0.961 13 C -0.529 4.529 14 H 0.060 0.940 15 C 0.066 3.934 16 N -0.885 5.885 17 Si 0.899 3.101 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.283 1.283 21 C -0.132 4.132 22 C -0.152 4.152 23 H 0.050 0.950 24 H 0.050 0.950 25 H 0.054 0.946 26 H 0.064 0.936 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.107 0.893 31 H 0.104 0.896 32 H 0.109 0.891 33 H 0.133 0.867 34 H 0.389 0.611 35 H 0.264 0.736 36 H 0.098 0.902 37 H 0.033 0.967 38 H 0.050 0.950 39 H 0.027 0.973 40 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.870 -1.446 10.931 11.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.103 4.103 4 C -0.191 4.191 5 C -0.092 4.092 6 C -0.226 4.226 7 C -0.100 4.100 8 C -0.222 4.222 9 C 0.132 3.868 10 N -0.345 5.345 11 C 0.170 3.830 12 H 0.057 0.943 13 C -0.567 4.567 14 H 0.078 0.922 15 C -0.137 4.137 16 N -0.523 5.523 17 Si 0.727 3.273 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.209 1.209 21 C -0.171 4.171 22 C -0.209 4.209 23 H 0.069 0.931 24 H 0.069 0.931 25 H 0.073 0.927 26 H 0.083 0.917 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.125 0.875 31 H 0.123 0.877 32 H 0.127 0.873 33 H 0.150 0.850 34 H 0.223 0.777 35 H 0.074 0.926 36 H 0.116 0.884 37 H 0.052 0.948 38 H 0.068 0.932 39 H 0.046 0.954 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.644 -1.489 10.524 10.953 hybrid contribution -0.774 0.261 -0.822 1.159 sum -3.419 -1.228 9.702 10.360 Atomic orbital electron populations 1.21792 0.96303 1.01252 1.01545 1.21530 0.94962 0.96969 1.02327 1.20325 0.91745 0.96494 1.01768 1.19235 0.94794 1.12868 0.92211 1.20562 0.93942 0.98612 0.96086 1.20600 0.94037 1.10652 0.97272 1.20772 0.98736 0.98162 0.92349 1.21070 0.92801 1.09331 0.99036 1.17832 0.91502 0.91128 0.86306 1.45599 1.08078 1.76852 1.03977 1.18727 0.92560 0.92578 0.79153 0.94293 1.21264 1.01113 1.42675 0.91684 0.92184 1.24869 0.95162 0.94952 0.98669 1.69880 1.15759 1.45910 1.20749 0.86423 0.80459 0.78553 0.81882 1.19774 1.20862 1.20871 1.22012 0.97137 0.97768 1.00151 1.22203 0.99824 0.98687 1.00144 0.93076 0.93117 0.92697 0.91677 0.92285 0.91952 0.91805 0.87530 0.87743 0.87317 0.84985 0.77682 0.92647 0.88361 0.94818 0.93156 0.95368 0.93442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.91 37.16 0.37 -1.38 16 2 C -0.12 -1.63 5.92 -26.73 -0.16 -1.79 16 3 C -0.07 -0.95 4.78 -27.88 -0.13 -1.09 16 4 C -0.19 -3.13 5.15 -104.42 -0.54 -3.67 16 5 C -0.07 -1.14 9.68 -39.61 -0.38 -1.52 16 6 C -0.20 -3.19 10.04 -39.55 -0.40 -3.58 16 7 C -0.08 -1.36 10.04 -39.61 -0.40 -1.75 16 8 C -0.20 -3.81 6.72 -39.38 -0.26 -4.07 16 9 C 0.24 4.65 5.46 -83.79 -0.46 4.19 16 10 N -0.72 -14.94 5.08 -53.29 -0.27 -15.21 16 11 C 0.27 6.51 2.20 -69.08 -0.15 6.36 16 12 H 0.04 1.03 6.48 -51.92 -0.34 0.69 16 13 C -0.53 -13.81 8.73 -34.44 -0.30 -14.11 16 14 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 15 C 0.07 1.75 5.29 -17.82 -0.09 1.65 16 16 N -0.88 -24.07 11.29 55.43 0.63 -23.44 16 17 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 16 18 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 21 C -0.13 -3.05 5.45 -26.73 -0.15 -3.19 16 22 C -0.15 -3.06 8.22 37.16 0.31 -2.75 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.06 0.81 8.05 -51.93 -0.42 0.39 16 29 H 0.06 0.97 6.82 -51.93 -0.35 0.62 16 30 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 31 H 0.10 1.38 8.06 -52.48 -0.42 0.95 16 32 H 0.11 1.57 8.06 -52.48 -0.42 1.15 16 33 H 0.13 2.70 4.01 -52.49 -0.21 2.49 16 34 H 0.39 7.69 6.65 -40.82 -0.27 7.42 16 35 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 36 H 0.10 2.53 5.95 -51.93 -0.31 2.22 16 37 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.05 1.00 5.39 -51.93 -0.28 0.72 16 39 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.05 0.95 6.35 -51.93 -0.33 0.62 16 LS Contribution 311.74 15.07 4.70 4.70 Total: -1.00 -26.31 311.74 -8.99 -35.31 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -6.28 Total: 9.84 kcal Atomic # 6 Polarization: -23.95 SS G_CDS: -2.75 Total: -26.70 kcal Atomic # 7 Polarization: -39.01 SS G_CDS: 0.36 Total: -38.65 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -26.31 -8.99 -35.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049556323.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.892 kcal (2) G-P(sol) polarization free energy of solvation -26.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds