Wall clock time and date at job start Mon Mar 30 2020 05:42:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.46895 * 2 1 4 4 C 1.50700 * 109.46757 * 179.97438 * 3 2 1 5 5 C 1.38131 * 120.03653 * 265.25132 * 4 3 2 6 6 C 1.38260 * 120.07073 * 180.27624 * 5 4 3 7 7 C 1.38305 * 120.15328 * 359.74696 * 6 5 4 8 8 C 1.38083 * 120.07622 * 359.97438 * 7 6 5 9 9 C 1.38893 * 120.03825 * 84.99966 * 4 3 2 10 10 N 1.39674 * 120.07307 * 0.02562 * 9 4 3 11 11 C 1.46504 * 119.99907 * 179.72666 * 10 9 4 12 12 H 1.09008 * 109.46847 * 324.99551 * 11 10 9 13 13 C 1.50698 * 109.46820 * 205.00081 * 11 10 9 14 14 H 1.07995 * 120.00485 * 359.97438 * 13 11 10 15 15 C 1.37880 * 119.99796 * 180.02562 * 13 11 10 16 16 N 1.31514 * 119.99726 * 359.97438 * 15 13 11 17 17 Si 1.86799 * 120.00037 * 179.97438 * 15 13 11 18 18 H 1.48494 * 109.47213 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.46909 * 119.99481 * 17 15 13 20 20 H 1.48501 * 109.46992 * 239.99341 * 17 15 13 21 21 C 1.52997 * 109.47349 * 84.99393 * 11 10 9 22 22 C 1.53000 * 109.47060 * 295.00344 * 21 11 10 23 23 H 1.08997 * 109.46986 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47412 * 300.00541 * 1 2 3 25 25 H 1.09001 * 109.46596 * 60.00476 * 1 2 3 26 26 H 1.08994 * 109.47166 * 239.99926 * 2 1 3 27 27 H 1.09001 * 109.46596 * 119.99524 * 2 1 3 28 28 H 1.08997 * 109.47532 * 59.99533 * 3 2 1 29 29 H 1.08997 * 109.46672 * 299.99814 * 3 2 1 30 30 H 1.08002 * 119.96297 * 0.02562 * 5 4 3 31 31 H 1.08003 * 119.92243 * 179.76540 * 6 5 4 32 32 H 1.08009 * 119.96488 * 179.97438 * 7 6 5 33 33 H 1.07994 * 120.04039 * 180.02562 * 8 7 6 34 34 H 0.97001 * 120.00508 * 359.71927 * 10 9 4 35 35 H 0.97005 * 120.00053 * 180.02562 * 16 15 13 36 36 H 1.09002 * 109.47153 * 175.00025 * 21 11 10 37 37 H 1.09001 * 109.46832 * 55.00216 * 21 11 10 38 38 H 1.08992 * 109.47399 * 59.99823 * 22 21 11 39 39 H 1.09004 * 109.46724 * 180.02562 * 22 21 11 40 40 H 1.09001 * 109.47194 * 299.99650 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 6 4.2379 1.5417 1.1926 6 6 5.6205 1.5474 1.1935 7 6 6.3165 1.4488 0.0024 8 6 5.6321 1.3436 -1.1922 9 6 4.2428 1.3375 -1.1969 10 7 3.5473 1.2323 -2.4035 11 6 4.2828 1.1277 -3.6662 12 1 5.1911 1.7277 -3.6084 13 6 3.4191 1.6313 -4.7938 14 1 2.4220 1.9927 -4.5904 15 6 3.9016 1.6296 -6.0854 16 7 5.1157 1.1890 -6.3332 17 14 2.8308 2.2532 -7.4833 18 1 1.5177 2.6896 -6.9443 19 1 3.5006 3.4011 -8.1458 20 1 2.6227 1.1641 -8.4711 21 6 4.6530 -0.3348 -3.9212 22 6 5.6298 -0.8089 -2.8432 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3632 0.5138 -0.8901 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 1.6766 1.9564 0.8899 29 1 1.6767 1.9563 -0.8900 30 1 3.6975 1.6188 2.1245 31 1 6.1583 1.6289 2.1266 32 1 7.3965 1.4540 0.0067 33 1 6.1761 1.2662 -2.1219 34 1 2.5773 1.2285 -2.4056 35 1 5.4554 1.1882 -7.2419 36 1 5.1214 -0.4255 -4.9012 37 1 3.7525 -0.9481 -3.8907 38 1 5.1615 -0.7182 -1.8632 39 1 5.8939 -1.8507 -3.0252 40 1 6.5304 -0.1956 -2.8737 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049556323.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:24 Heat of formation + Delta-G solvation = -7.516932 kcal Electronic energy + Delta-G solvation = -18449.982691 eV Core-core repulsion = 15842.091297 eV Total energy + Delta-G solvation = -2607.891395 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.70213 -37.56386 -35.95336 -34.53382 -32.88654 -31.55492 -30.46782 -28.08643 -26.96367 -24.88465 -23.51412 -22.78187 -21.47201 -20.93135 -18.96106 -17.64195 -17.25435 -16.58328 -15.99183 -15.62243 -15.18621 -15.09771 -14.70919 -14.51795 -14.28298 -13.99764 -13.54791 -13.18081 -13.11166 -13.01126 -12.83193 -12.71172 -12.64625 -12.21768 -12.00145 -11.97313 -11.79903 -11.63004 -11.45900 -11.33167 -10.99379 -10.73571 -10.37014 -9.41309 -8.19582 -7.89458 -6.33239 0.71005 0.98236 1.38971 1.41168 1.51912 2.36451 3.02555 3.11378 3.17261 4.02804 4.06626 4.25671 4.32673 4.39729 4.51698 4.58082 4.62806 4.66555 4.74056 4.84084 4.90261 4.95964 5.02595 5.06815 5.12189 5.22919 5.29030 5.33703 5.39792 5.42356 5.51125 5.58208 5.67679 5.72141 5.86521 5.88849 5.93770 6.16726 6.32441 6.59541 6.92118 7.27387 7.40099 8.86400 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.020077 B = 0.007272 C = 0.006013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.324276 B = 3849.542052 C = 4655.311319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.115 4.115 3 C -0.064 4.064 4 C -0.185 4.185 5 C -0.074 4.074 6 C -0.195 4.195 7 C -0.088 4.088 8 C -0.220 4.220 9 C 0.214 3.786 10 N -0.728 5.728 11 C 0.285 3.715 12 H 0.006 0.994 13 C -0.547 4.547 14 H 0.057 0.943 15 C 0.020 3.980 16 N -0.911 5.911 17 Si 0.962 3.038 18 H -0.268 1.268 19 H -0.281 1.281 20 H -0.278 1.278 21 C -0.123 4.123 22 C -0.136 4.136 23 H 0.058 0.942 24 H 0.067 0.933 25 H 0.048 0.952 26 H 0.039 0.961 27 H 0.066 0.934 28 H 0.085 0.915 29 H 0.051 0.949 30 H 0.140 0.860 31 H 0.137 0.863 32 H 0.128 0.872 33 H 0.108 0.892 34 H 0.391 0.609 35 H 0.265 0.735 36 H 0.070 0.930 37 H 0.027 0.973 38 H 0.053 0.947 39 H 0.042 0.958 40 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.740 -1.325 13.086 13.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.153 4.153 3 C -0.101 4.101 4 C -0.190 4.190 5 C -0.093 4.093 6 C -0.215 4.215 7 C -0.106 4.106 8 C -0.243 4.243 9 C 0.107 3.893 10 N -0.353 5.353 11 C 0.181 3.819 12 H 0.024 0.976 13 C -0.586 4.586 14 H 0.075 0.925 15 C -0.180 4.180 16 N -0.549 5.549 17 Si 0.787 3.213 18 H -0.193 1.193 19 H -0.206 1.206 20 H -0.204 1.204 21 C -0.163 4.163 22 C -0.193 4.193 23 H 0.077 0.923 24 H 0.086 0.914 25 H 0.067 0.933 26 H 0.058 0.942 27 H 0.085 0.915 28 H 0.104 0.896 29 H 0.069 0.931 30 H 0.158 0.842 31 H 0.155 0.845 32 H 0.146 0.854 33 H 0.126 0.874 34 H 0.225 0.775 35 H 0.074 0.926 36 H 0.089 0.911 37 H 0.045 0.955 38 H 0.072 0.928 39 H 0.061 0.939 40 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -3.509 -1.367 12.721 13.267 hybrid contribution -0.452 0.248 -1.359 1.454 sum -3.961 -1.120 11.361 12.084 Atomic orbital electron populations 1.21760 0.94651 1.01994 1.02100 1.21462 0.96377 0.96010 1.01421 1.20361 0.90246 0.97251 1.02247 1.19568 0.96148 1.11537 0.91768 1.20979 0.94277 0.97303 0.96730 1.21022 0.94346 1.08241 0.97927 1.21043 0.99914 0.97701 0.91971 1.21036 0.93006 1.11095 0.99196 1.18079 0.91771 0.92905 0.86528 1.45248 1.07851 1.78694 1.03554 1.18314 0.91220 0.92133 0.80252 0.97622 1.21596 1.01288 1.42865 0.92818 0.92492 1.25636 0.96307 0.95127 1.00928 1.70003 1.17092 1.46632 1.21220 0.85451 0.78927 0.77984 0.78919 1.19265 1.20633 1.20375 1.21835 0.97228 0.97544 0.99662 1.22032 0.98854 0.99268 0.99165 0.92292 0.91400 0.93292 0.94195 0.91530 0.89607 0.93073 0.84235 0.84526 0.85393 0.87406 0.77469 0.92578 0.91136 0.95459 0.92777 0.93888 0.93737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.10 9.91 71.98 0.71 -2.39 16 2 C -0.11 -2.93 5.92 30.60 0.18 -2.75 16 3 C -0.06 -1.73 4.78 29.85 0.14 -1.59 16 4 C -0.19 -5.96 5.15 -19.73 -0.10 -6.06 16 5 C -0.07 -2.06 9.68 22.25 0.22 -1.85 16 6 C -0.20 -5.40 10.04 22.29 0.22 -5.18 16 7 C -0.09 -2.79 10.04 22.25 0.22 -2.57 16 8 C -0.22 -8.52 6.72 22.40 0.15 -8.36 16 9 C 0.21 8.29 5.46 38.21 0.21 8.50 16 10 N -0.73 -31.15 5.08 -322.50 -1.64 -32.79 16 11 C 0.28 14.26 2.20 44.24 0.10 14.36 16 12 H 0.01 0.34 6.48 -2.38 -0.02 0.32 16 13 C -0.55 -29.53 8.73 25.60 0.22 -29.30 16 14 H 0.06 3.02 7.74 -2.91 -0.02 3.00 16 15 C 0.02 1.09 5.29 84.66 0.45 1.54 16 16 N -0.91 -51.12 11.29 21.45 0.24 -50.88 16 17 Si 0.96 42.73 29.54 68.60 2.03 44.75 16 18 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 19 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 20 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 21 C -0.12 -5.95 5.45 30.59 0.17 -5.78 16 22 C -0.14 -5.63 8.22 71.98 0.59 -5.04 16 23 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 24 H 0.07 1.19 8.14 -2.39 -0.02 1.18 16 25 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.09 1.93 8.05 -2.39 -0.02 1.91 16 29 H 0.05 1.52 6.82 -2.39 -0.02 1.51 16 30 H 0.14 2.97 8.06 -2.91 -0.02 2.94 16 31 H 0.14 2.93 8.06 -2.91 -0.02 2.91 16 32 H 0.13 3.48 8.06 -2.91 -0.02 3.45 16 33 H 0.11 4.64 4.01 -2.91 -0.01 4.63 16 34 H 0.39 15.99 6.65 -92.71 -0.62 15.37 16 35 H 0.26 14.08 8.31 -92.70 -0.77 13.31 16 36 H 0.07 3.80 5.95 -2.39 -0.01 3.78 16 37 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.05 2.19 5.39 -2.39 -0.01 2.17 16 39 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.04 1.84 6.35 -2.39 -0.02 1.82 16 Total: -1.00 -57.66 311.74 4.52 -53.14 By element: Atomic # 1 Polarization: 31.85 SS G_CDS: 0.40 Total: 32.25 kcal Atomic # 6 Polarization: -49.96 SS G_CDS: 3.48 Total: -46.48 kcal Atomic # 7 Polarization: -82.27 SS G_CDS: -1.40 Total: -83.67 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.75 kcal Total: -57.66 4.52 -53.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049556323.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.627 kcal (2) G-P(sol) polarization free energy of solvation -57.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds