Wall clock time and date at job start Mon Mar 30 2020 05:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47285 * 2 1 4 4 C 1.50700 * 109.46830 * 179.97438 * 3 2 1 5 5 C 1.38127 * 120.03965 * 265.01815 * 4 3 2 6 6 C 1.38261 * 120.07670 * 180.02562 * 5 4 3 7 7 C 1.38311 * 120.14750 * 359.97438 * 6 5 4 8 8 C 1.38079 * 120.07447 * 359.75091 * 7 6 5 9 9 C 1.38888 * 120.03615 * 85.00532 * 4 3 2 10 10 N 1.39674 * 120.07514 * 359.97438 * 9 4 3 11 11 C 1.46500 * 119.99896 * 180.02562 * 10 9 4 12 12 H 1.09000 * 109.47381 * 34.99912 * 11 10 9 13 13 C 1.50706 * 109.47187 * 155.00158 * 11 10 9 14 14 H 1.07998 * 119.99629 * 359.97438 * 13 11 10 15 15 C 1.37875 * 119.99955 * 180.02562 * 13 11 10 16 16 N 1.31515 * 119.99932 * 359.97438 * 15 13 11 17 17 Si 1.86800 * 119.99908 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47295 * 59.99168 * 17 15 13 19 19 H 1.48500 * 109.47035 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.46845 * 299.99264 * 17 15 13 21 21 C 1.53002 * 109.46766 * 274.99738 * 11 10 9 22 22 C 1.52999 * 109.47329 * 65.00294 * 21 11 10 23 23 H 1.09000 * 109.47077 * 300.00064 * 1 2 3 24 24 H 1.08997 * 109.46816 * 59.99923 * 1 2 3 25 25 H 1.08996 * 109.47690 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47073 * 239.99383 * 2 1 3 27 27 H 1.09006 * 109.46629 * 120.00294 * 2 1 3 28 28 H 1.09000 * 109.47116 * 59.99960 * 3 2 1 29 29 H 1.08997 * 109.47256 * 299.99807 * 3 2 1 30 30 H 1.08002 * 119.95706 * 359.97438 * 5 4 3 31 31 H 1.07997 * 119.92498 * 179.97438 * 6 5 4 32 32 H 1.07998 * 119.95863 * 180.02562 * 7 6 5 33 33 H 1.08006 * 120.04003 * 180.27318 * 8 7 6 34 34 H 0.96998 * 120.00226 * 0.02562 * 10 9 4 35 35 H 0.97003 * 119.99476 * 180.02562 * 16 15 13 36 36 H 1.09005 * 109.46847 * 185.00223 * 21 11 10 37 37 H 1.08999 * 109.47369 * 304.99989 * 21 11 10 38 38 H 1.08993 * 109.46808 * 300.00103 * 22 21 11 39 39 H 1.09008 * 109.47032 * 59.99816 * 22 21 11 40 40 H 1.08998 * 109.46896 * 179.97438 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5470 1.4423 0.0006 5 6 4.2380 1.5463 1.1921 6 6 5.6206 1.5468 1.1936 7 6 6.3165 1.4427 0.0028 8 6 5.6321 1.3328 -1.1913 9 6 4.2427 1.3374 -1.1969 10 7 3.5472 1.2313 -2.4034 11 6 4.2827 1.1202 -3.6655 12 1 5.1931 0.5424 -3.5059 13 6 3.4212 0.4274 -4.6898 14 1 2.4255 0.1020 -4.4267 15 6 3.9045 0.2080 -5.9623 16 7 5.1171 0.6037 -6.2824 17 14 2.8368 -0.6514 -7.2315 18 1 1.5964 0.1354 -7.4494 19 1 3.5823 -0.7639 -8.5109 20 1 2.4828 -2.0085 -6.7434 21 6 4.6476 2.5185 -4.1680 22 6 5.6223 3.1744 -3.1879 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6768 1.9563 -0.8900 30 1 3.6976 1.6281 2.1236 31 1 6.1584 1.6286 2.1265 32 1 7.3965 1.4430 0.0075 33 1 6.1761 1.2471 -2.1205 34 1 2.5772 1.2312 -2.4058 35 1 5.4569 0.4497 -7.1778 36 1 5.1159 2.4413 -5.1493 37 1 3.7448 3.1247 -4.2430 38 1 5.1541 3.2516 -2.2067 39 1 6.5252 2.5682 -3.1129 40 1 5.8826 4.1704 -3.5461 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049556324.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:27 Heat of formation + Delta-G solvation = 4.495263 kcal Electronic energy + Delta-G solvation = -18424.205994 eV Core-core repulsion = 15816.835488 eV Total energy + Delta-G solvation = -2607.370507 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.30144 -35.89881 -34.79587 -32.69572 -31.27145 -30.21669 -28.90763 -26.45145 -25.65323 -23.04460 -22.08224 -21.53668 -20.18929 -19.23752 -17.24363 -16.06932 -15.61608 -14.95129 -14.59739 -14.08881 -13.85176 -13.57905 -13.40874 -13.26996 -12.68449 -12.44119 -11.99987 -11.80688 -11.74558 -11.44459 -11.29214 -11.09596 -10.93559 -10.84740 -10.68940 -10.43951 -10.27315 -10.15555 -10.06997 -9.65198 -9.24908 -8.95276 -8.44193 -8.10158 -6.39556 -6.16193 -4.24441 2.03595 2.32908 3.23447 3.28615 3.30552 4.25911 4.49922 4.64035 5.15239 5.18920 5.20725 5.36723 5.48399 5.62921 5.73029 5.76315 6.01494 6.03255 6.06972 6.17711 6.20009 6.25315 6.33377 6.45109 6.49895 6.54632 6.59407 6.69436 6.92873 6.99100 7.09525 7.14470 7.24768 7.24922 7.46110 7.60872 7.71418 7.85355 8.10325 8.40738 8.73949 8.93470 9.42591 10.88937 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.019138 B = 0.007660 C = 0.005900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.696773 B = 3654.378070 C = 4744.961096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C -0.065 4.065 4 C -0.186 4.186 5 C -0.073 4.073 6 C -0.205 4.205 7 C -0.081 4.081 8 C -0.199 4.199 9 C 0.242 3.758 10 N -0.722 5.722 11 C 0.273 3.727 12 H 0.040 0.960 13 C -0.530 4.530 14 H 0.059 0.941 15 C 0.067 3.933 16 N -0.885 5.885 17 Si 0.899 3.101 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.276 1.276 21 C -0.132 4.132 22 C -0.151 4.151 23 H 0.049 0.951 24 H 0.054 0.946 25 H 0.050 0.950 26 H 0.066 0.934 27 H 0.058 0.942 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.107 0.893 31 H 0.104 0.896 32 H 0.109 0.891 33 H 0.132 0.868 34 H 0.389 0.611 35 H 0.265 0.735 36 H 0.098 0.902 37 H 0.033 0.967 38 H 0.049 0.951 39 H 0.047 0.953 40 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.853 1.634 10.638 11.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.102 4.102 4 C -0.191 4.191 5 C -0.092 4.092 6 C -0.226 4.226 7 C -0.100 4.100 8 C -0.222 4.222 9 C 0.132 3.868 10 N -0.345 5.345 11 C 0.171 3.829 12 H 0.057 0.943 13 C -0.568 4.568 14 H 0.077 0.923 15 C -0.136 4.136 16 N -0.523 5.523 17 Si 0.727 3.273 18 H -0.202 1.202 19 H -0.211 1.211 20 H -0.202 1.202 21 C -0.171 4.171 22 C -0.208 4.208 23 H 0.068 0.932 24 H 0.073 0.927 25 H 0.069 0.931 26 H 0.085 0.915 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.125 0.875 31 H 0.123 0.877 32 H 0.127 0.873 33 H 0.150 0.850 34 H 0.223 0.777 35 H 0.075 0.925 36 H 0.116 0.884 37 H 0.052 0.948 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -2.618 1.610 10.224 10.676 hybrid contribution -0.796 -0.401 -0.753 1.167 sum -3.414 1.209 9.470 10.139 Atomic orbital electron populations 1.21788 0.96326 1.01279 1.01462 1.21537 0.94943 0.96931 1.02478 1.20316 0.91728 0.96555 1.01643 1.19234 0.94801 1.12863 0.92221 1.20562 0.93942 0.98607 0.96088 1.20602 0.94037 1.10675 0.97253 1.20770 0.98735 0.98207 0.92299 1.21062 0.92796 1.09366 0.98993 1.17830 0.91503 0.91144 0.86288 1.45597 1.08076 1.76806 1.04028 1.18717 0.92565 0.92607 0.79059 0.94267 1.21186 1.01235 1.38447 0.95974 0.92277 1.24862 0.95149 0.95419 0.98170 1.69860 1.15803 1.46010 1.20635 0.86537 0.80292 0.80069 0.80407 1.20194 1.21110 1.20189 1.22023 0.97158 0.96932 1.01032 1.22196 0.99829 0.98682 1.00134 0.93169 0.92731 0.93052 0.91482 0.92276 0.91990 0.91922 0.87531 0.87740 0.87317 0.85008 0.77688 0.92534 0.88353 0.94821 0.93195 0.93438 0.95355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.91 37.16 0.37 -1.41 16 2 C -0.12 -1.68 5.92 -26.73 -0.16 -1.84 16 3 C -0.06 -0.94 4.78 -27.89 -0.13 -1.08 16 4 C -0.19 -3.14 5.15 -104.42 -0.54 -3.67 16 5 C -0.07 -1.14 9.67 -39.61 -0.38 -1.52 16 6 C -0.20 -3.19 10.04 -39.55 -0.40 -3.58 16 7 C -0.08 -1.35 10.04 -39.61 -0.40 -1.75 16 8 C -0.20 -3.80 6.72 -39.38 -0.26 -4.07 16 9 C 0.24 4.65 5.46 -83.79 -0.46 4.20 16 10 N -0.72 -14.93 5.08 -53.28 -0.27 -15.20 16 11 C 0.27 6.53 2.20 -69.08 -0.15 6.38 16 12 H 0.04 1.04 6.47 -51.93 -0.34 0.70 16 13 C -0.53 -13.81 8.73 -34.44 -0.30 -14.11 16 14 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 15 C 0.07 1.76 5.29 -17.82 -0.09 1.67 16 16 N -0.89 -24.07 11.29 55.43 0.63 -23.45 16 17 Si 0.90 20.52 29.54 -169.99 -5.02 15.50 16 18 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 19 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 21 C -0.13 -3.07 5.45 -26.73 -0.15 -3.22 16 22 C -0.15 -3.06 8.22 37.16 0.31 -2.76 16 23 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.06 0.80 8.05 -51.93 -0.42 0.38 16 29 H 0.06 0.94 6.82 -51.93 -0.35 0.59 16 30 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 31 H 0.10 1.38 8.06 -52.49 -0.42 0.95 16 32 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 33 H 0.13 2.69 4.03 -52.48 -0.21 2.48 16 34 H 0.39 7.68 6.65 -40.82 -0.27 7.41 16 35 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 36 H 0.10 2.53 5.95 -51.93 -0.31 2.22 16 37 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.05 1.00 5.40 -51.93 -0.28 0.72 16 39 H 0.05 0.95 6.36 -51.92 -0.33 0.62 16 40 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 311.77 15.07 4.70 4.70 Total: -1.00 -26.24 311.77 -9.00 -35.24 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: -6.28 Total: 9.98 kcal Atomic # 6 Polarization: -24.02 SS G_CDS: -2.75 Total: -26.77 kcal Atomic # 7 Polarization: -39.01 SS G_CDS: 0.36 Total: -38.65 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -26.24 -9.00 -35.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049556324.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.734 kcal (2) G-P(sol) polarization free energy of solvation -26.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds