Wall clock time and date at job start Mon Mar 30 2020 05:42:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47285 * 2 1 4 4 C 1.50700 * 109.46830 * 179.97438 * 3 2 1 5 5 C 1.38127 * 120.03965 * 265.01815 * 4 3 2 6 6 C 1.38261 * 120.07670 * 180.02562 * 5 4 3 7 7 C 1.38311 * 120.14750 * 359.97438 * 6 5 4 8 8 C 1.38079 * 120.07447 * 359.75091 * 7 6 5 9 9 C 1.38888 * 120.03615 * 85.00532 * 4 3 2 10 10 N 1.39674 * 120.07514 * 359.97438 * 9 4 3 11 11 C 1.46500 * 119.99896 * 180.02562 * 10 9 4 12 12 H 1.09000 * 109.47381 * 34.99912 * 11 10 9 13 13 C 1.50706 * 109.47187 * 155.00158 * 11 10 9 14 14 H 1.07998 * 119.99629 * 359.97438 * 13 11 10 15 15 C 1.37875 * 119.99955 * 180.02562 * 13 11 10 16 16 N 1.31515 * 119.99932 * 359.97438 * 15 13 11 17 17 Si 1.86800 * 119.99908 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47295 * 59.99168 * 17 15 13 19 19 H 1.48500 * 109.47035 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.46845 * 299.99264 * 17 15 13 21 21 C 1.53002 * 109.46766 * 274.99738 * 11 10 9 22 22 C 1.52999 * 109.47329 * 65.00294 * 21 11 10 23 23 H 1.09000 * 109.47077 * 300.00064 * 1 2 3 24 24 H 1.08997 * 109.46816 * 59.99923 * 1 2 3 25 25 H 1.08996 * 109.47690 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47073 * 239.99383 * 2 1 3 27 27 H 1.09006 * 109.46629 * 120.00294 * 2 1 3 28 28 H 1.09000 * 109.47116 * 59.99960 * 3 2 1 29 29 H 1.08997 * 109.47256 * 299.99807 * 3 2 1 30 30 H 1.08002 * 119.95706 * 359.97438 * 5 4 3 31 31 H 1.07997 * 119.92498 * 179.97438 * 6 5 4 32 32 H 1.07998 * 119.95863 * 180.02562 * 7 6 5 33 33 H 1.08006 * 120.04003 * 180.27318 * 8 7 6 34 34 H 0.96998 * 120.00226 * 0.02562 * 10 9 4 35 35 H 0.97003 * 119.99476 * 180.02562 * 16 15 13 36 36 H 1.09005 * 109.46847 * 185.00223 * 21 11 10 37 37 H 1.08999 * 109.47369 * 304.99989 * 21 11 10 38 38 H 1.08993 * 109.46808 * 300.00103 * 22 21 11 39 39 H 1.09008 * 109.47032 * 59.99816 * 22 21 11 40 40 H 1.08998 * 109.46896 * 179.97438 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5470 1.4423 0.0006 5 6 4.2380 1.5463 1.1921 6 6 5.6206 1.5468 1.1936 7 6 6.3165 1.4427 0.0028 8 6 5.6321 1.3328 -1.1913 9 6 4.2427 1.3374 -1.1969 10 7 3.5472 1.2313 -2.4034 11 6 4.2827 1.1202 -3.6655 12 1 5.1931 0.5424 -3.5059 13 6 3.4212 0.4274 -4.6898 14 1 2.4255 0.1020 -4.4267 15 6 3.9045 0.2080 -5.9623 16 7 5.1171 0.6037 -6.2824 17 14 2.8368 -0.6514 -7.2315 18 1 1.5964 0.1354 -7.4494 19 1 3.5823 -0.7639 -8.5109 20 1 2.4828 -2.0085 -6.7434 21 6 4.6476 2.5185 -4.1680 22 6 5.6223 3.1744 -3.1879 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6768 1.9563 -0.8900 30 1 3.6976 1.6281 2.1236 31 1 6.1584 1.6286 2.1265 32 1 7.3965 1.4430 0.0075 33 1 6.1761 1.2471 -2.1205 34 1 2.5772 1.2312 -2.4058 35 1 5.4569 0.4497 -7.1778 36 1 5.1159 2.4413 -5.1493 37 1 3.7448 3.1247 -4.2430 38 1 5.1541 3.2516 -2.2067 39 1 6.5252 2.5682 -3.1129 40 1 5.8826 4.1704 -3.5461 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049556324.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:26 Heat of formation + Delta-G solvation = -7.558304 kcal Electronic energy + Delta-G solvation = -18424.728676 eV Core-core repulsion = 15816.835488 eV Total energy + Delta-G solvation = -2607.893189 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.69904 -37.56381 -35.95778 -34.53165 -32.86998 -31.56466 -30.46769 -28.08163 -26.96463 -24.88212 -23.51213 -22.78410 -21.46462 -20.93764 -18.95338 -17.64842 -17.24824 -16.57823 -15.97249 -15.60691 -15.24023 -15.08534 -14.72723 -14.59856 -14.17578 -13.93133 -13.55893 -13.24358 -13.15329 -12.93525 -12.84591 -12.71809 -12.63178 -12.23914 -12.01284 -11.94364 -11.84634 -11.60583 -11.47548 -11.30417 -11.00163 -10.73652 -10.36715 -9.41558 -8.18899 -7.89349 -6.32694 0.71004 0.98230 1.41024 1.41580 1.49484 2.36672 3.02933 3.11162 3.17654 4.03166 4.06583 4.25780 4.32456 4.39760 4.51681 4.58022 4.62822 4.66435 4.74216 4.83916 4.89686 4.96064 5.02789 5.06285 5.12280 5.22683 5.29172 5.33763 5.39607 5.42546 5.50660 5.58223 5.67759 5.72262 5.86523 5.89033 5.93820 6.16911 6.32518 6.59619 6.92117 7.27533 7.40456 8.86652 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.019138 B = 0.007660 C = 0.005900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.696773 B = 3654.378070 C = 4744.961096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.117 4.117 3 C -0.062 4.062 4 C -0.185 4.185 5 C -0.074 4.074 6 C -0.195 4.195 7 C -0.088 4.088 8 C -0.220 4.220 9 C 0.214 3.786 10 N -0.728 5.728 11 C 0.285 3.715 12 H 0.006 0.994 13 C -0.548 4.548 14 H 0.057 0.943 15 C 0.021 3.979 16 N -0.911 5.911 17 Si 0.961 3.039 18 H -0.270 1.270 19 H -0.282 1.282 20 H -0.274 1.274 21 C -0.125 4.125 22 C -0.136 4.136 23 H 0.068 0.932 24 H 0.049 0.951 25 H 0.056 0.944 26 H 0.037 0.963 27 H 0.065 0.935 28 H 0.087 0.913 29 H 0.052 0.948 30 H 0.140 0.860 31 H 0.137 0.863 32 H 0.128 0.872 33 H 0.108 0.892 34 H 0.391 0.609 35 H 0.265 0.735 36 H 0.071 0.929 37 H 0.027 0.973 38 H 0.053 0.947 39 H 0.044 0.956 40 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.757 1.875 12.807 13.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.154 4.154 3 C -0.100 4.100 4 C -0.190 4.190 5 C -0.093 4.093 6 C -0.215 4.215 7 C -0.106 4.106 8 C -0.243 4.243 9 C 0.107 3.893 10 N -0.353 5.353 11 C 0.181 3.819 12 H 0.024 0.976 13 C -0.587 4.587 14 H 0.075 0.925 15 C -0.180 4.180 16 N -0.549 5.549 17 Si 0.786 3.214 18 H -0.195 1.195 19 H -0.207 1.207 20 H -0.199 1.199 21 C -0.164 4.164 22 C -0.193 4.193 23 H 0.087 0.913 24 H 0.068 0.932 25 H 0.075 0.925 26 H 0.056 0.944 27 H 0.084 0.916 28 H 0.105 0.895 29 H 0.071 0.929 30 H 0.158 0.842 31 H 0.155 0.845 32 H 0.146 0.854 33 H 0.126 0.874 34 H 0.225 0.775 35 H 0.074 0.926 36 H 0.089 0.911 37 H 0.046 0.954 38 H 0.072 0.928 39 H 0.063 0.937 40 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -3.518 1.856 12.434 13.054 hybrid contribution -0.464 -0.482 -1.290 1.453 sum -3.982 1.374 11.144 11.913 Atomic orbital electron populations 1.21754 0.94578 1.01951 1.02160 1.21470 0.96452 0.96201 1.01309 1.20352 0.90220 0.97078 1.02341 1.19567 0.96162 1.11541 0.91765 1.20981 0.94276 0.97289 0.96735 1.21024 0.94350 1.08272 0.97902 1.21041 0.99910 0.97740 0.91927 1.21028 0.93005 1.11116 0.99172 1.18079 0.91771 0.92907 0.86521 1.45244 1.07852 1.78623 1.03622 1.18305 0.91226 0.92145 0.80191 0.97607 1.21535 1.01460 1.38778 0.96906 0.92483 1.25629 0.96285 0.96054 0.99985 1.69990 1.17134 1.46829 1.20957 0.85570 0.78812 0.78982 0.78022 1.19515 1.20727 1.19923 1.21853 0.97266 0.96925 1.00366 1.22025 0.98857 0.98984 0.99438 0.91270 0.93211 0.92450 0.94424 0.91636 0.89484 0.92907 0.84223 0.84526 0.85400 0.87442 0.77467 0.92569 0.91106 0.95435 0.92815 0.93739 0.93843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.17 9.91 71.98 0.71 -2.45 16 2 C -0.12 -3.06 5.92 30.59 0.18 -2.88 16 3 C -0.06 -1.70 4.78 29.85 0.14 -1.55 16 4 C -0.19 -5.96 5.15 -19.74 -0.10 -6.06 16 5 C -0.07 -2.06 9.67 22.25 0.22 -1.85 16 6 C -0.20 -5.41 10.04 22.29 0.22 -5.18 16 7 C -0.09 -2.79 10.04 22.25 0.22 -2.57 16 8 C -0.22 -8.51 6.72 22.40 0.15 -8.36 16 9 C 0.21 8.29 5.46 38.21 0.21 8.50 16 10 N -0.73 -31.13 5.08 -322.50 -1.64 -32.77 16 11 C 0.29 14.29 2.20 44.25 0.10 14.38 16 12 H 0.01 0.35 6.47 -2.39 -0.02 0.33 16 13 C -0.55 -29.57 8.73 25.60 0.22 -29.34 16 14 H 0.06 3.01 7.74 -2.91 -0.02 2.99 16 15 C 0.02 1.12 5.29 84.65 0.45 1.57 16 16 N -0.91 -51.13 11.29 21.45 0.24 -50.89 16 17 Si 0.96 42.70 29.54 68.60 2.03 44.73 16 18 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 19 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 20 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 21 C -0.12 -6.02 5.45 30.59 0.17 -5.85 16 22 C -0.14 -5.62 8.22 71.98 0.59 -5.03 16 23 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 24 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 25 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 28 H 0.09 1.93 8.05 -2.39 -0.02 1.91 16 29 H 0.05 1.54 6.82 -2.39 -0.02 1.53 16 30 H 0.14 2.96 8.06 -2.91 -0.02 2.94 16 31 H 0.14 2.93 8.06 -2.91 -0.02 2.91 16 32 H 0.13 3.48 8.06 -2.91 -0.02 3.45 16 33 H 0.11 4.63 4.03 -2.91 -0.01 4.62 16 34 H 0.39 15.96 6.65 -92.71 -0.62 15.35 16 35 H 0.27 14.17 8.31 -92.71 -0.77 13.40 16 36 H 0.07 3.81 5.95 -2.38 -0.01 3.80 16 37 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.05 2.17 5.40 -2.39 -0.01 2.16 16 39 H 0.04 1.84 6.36 -2.38 -0.02 1.82 16 40 H 0.04 1.61 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -57.61 311.77 4.52 -53.09 By element: Atomic # 1 Polarization: 32.12 SS G_CDS: 0.40 Total: 32.52 kcal Atomic # 6 Polarization: -50.16 SS G_CDS: 3.48 Total: -46.68 kcal Atomic # 7 Polarization: -82.27 SS G_CDS: -1.40 Total: -83.66 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Total: -57.61 4.52 -53.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049556324.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.534 kcal (2) G-P(sol) polarization free energy of solvation -57.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds