Wall clock time and date at job start Mon Mar 30 2020 05:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 C 1.50706 * 109.46735 * 180.02562 * 3 2 1 5 5 C 1.38123 * 120.03527 * 264.99242 * 4 3 2 6 6 C 1.38258 * 120.07464 * 179.97438 * 5 4 3 7 7 C 1.38304 * 120.15156 * 0.05194 * 6 5 4 8 8 C 1.38082 * 120.07545 * 359.97438 * 7 6 5 9 9 C 1.38888 * 120.03987 * 84.72448 * 4 3 2 10 10 N 1.39674 * 120.07273 * 0.02562 * 9 4 3 11 11 C 1.46500 * 119.99524 * 180.02562 * 10 9 4 12 12 C 1.53008 * 109.46962 * 179.97438 * 11 10 9 13 13 C 1.53001 * 109.47016 * 180.02562 * 12 11 10 14 14 C 1.50708 * 109.46741 * 180.02562 * 13 12 11 15 15 H 1.08001 * 119.99744 * 0.02562 * 14 13 12 16 16 C 1.37878 * 119.99848 * 180.02562 * 14 13 12 17 17 N 1.31510 * 120.00147 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 119.99753 * 359.97438 * 16 14 13 19 19 H 1.48512 * 109.46822 * 90.00389 * 18 16 14 20 20 H 1.48504 * 109.47073 * 210.00043 * 18 16 14 21 21 H 1.48496 * 109.47419 * 330.00330 * 18 16 14 22 22 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 23 23 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 25 25 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 26 26 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 27 27 H 1.09001 * 109.47194 * 299.99650 * 3 2 1 28 28 H 1.08992 * 109.47399 * 59.99823 * 3 2 1 29 29 H 1.08010 * 119.96232 * 359.97438 * 5 4 3 30 30 H 1.08008 * 119.92449 * 180.02562 * 6 5 4 31 31 H 1.08007 * 119.96462 * 179.97438 * 7 6 5 32 32 H 1.08001 * 120.03808 * 180.02562 * 8 7 6 33 33 H 0.96993 * 120.00204 * 0.02562 * 10 9 4 34 34 H 1.08995 * 109.47410 * 300.00128 * 11 10 9 35 35 H 1.09007 * 109.47196 * 60.00661 * 11 10 9 36 36 H 1.08995 * 109.47191 * 300.00297 * 12 11 10 37 37 H 1.09007 * 109.46596 * 60.00329 * 12 11 10 38 38 H 1.08995 * 109.47208 * 300.00072 * 13 12 11 39 39 H 1.08993 * 109.47206 * 60.00505 * 13 12 11 40 40 H 0.96995 * 120.00449 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4424 -0.0006 5 6 4.2389 1.5466 1.1903 6 6 5.6215 1.5461 1.1907 7 6 6.3165 1.4424 -0.0005 8 6 5.6311 1.3385 -1.1948 9 6 4.2418 1.3320 -1.1982 10 7 3.5453 1.2214 -2.4038 11 6 4.2798 1.1045 -3.6659 12 6 3.2874 0.9977 -4.8256 13 6 4.0545 0.8750 -6.1437 14 6 3.0770 0.7704 -7.2859 15 1 2.0148 0.7901 -7.0912 16 6 3.5386 0.6498 -8.5795 17 7 2.6856 0.5591 -9.5763 18 14 5.3757 0.6165 -8.9162 19 1 5.8610 -0.7865 -8.8760 20 1 5.6436 1.1947 -10.2576 21 1 6.0829 1.4147 -7.8829 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3635 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.6767 1.9563 -0.8900 28 1 1.6766 1.9563 0.8899 29 1 3.6992 1.6285 2.1223 30 1 6.1600 1.6272 2.1234 31 1 7.3965 1.4427 0.0033 32 1 6.1744 1.2572 -2.1246 33 1 2.5754 1.2221 -2.4054 34 1 4.9073 1.9849 -3.8041 35 1 4.9058 0.2124 -3.6407 36 1 2.6603 0.1171 -4.6872 37 1 2.6611 1.8895 -4.8510 38 1 4.6819 1.7554 -6.2823 39 1 4.6805 -0.0169 -6.1180 40 1 3.0103 0.4738 -10.4863 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049578577.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:09 Heat of formation + Delta-G solvation = -7.699679 kcal Electronic energy + Delta-G solvation = -17297.303392 eV Core-core repulsion = 14689.404072 eV Total energy + Delta-G solvation = -2607.899319 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.68521 -36.09840 -35.14773 -33.55755 -31.73432 -30.98413 -29.11188 -26.79940 -26.09812 -23.36836 -22.15355 -21.13888 -20.85540 -20.05600 -17.20070 -16.79280 -16.11563 -15.32978 -14.96334 -14.65507 -14.22982 -14.02608 -13.78314 -13.60115 -13.46069 -12.78355 -12.68597 -12.26706 -12.12190 -11.97326 -11.82249 -11.26275 -11.25632 -11.04672 -10.96362 -10.71355 -10.61267 -10.16422 -9.96200 -9.73177 -9.68539 -9.25168 -8.66389 -8.57958 -7.19046 -6.08265 -4.07073 1.50583 1.75402 3.28237 3.35918 3.38919 3.68202 3.96206 4.41682 4.76683 4.82541 5.02645 5.06768 5.16750 5.25560 5.32952 5.38234 5.45934 5.59402 5.61215 5.67300 5.72807 5.75961 5.86120 5.94131 5.98594 6.06922 6.16266 6.25125 6.42326 6.42728 6.48002 6.63734 6.73077 6.75485 7.01424 7.19650 7.33515 7.53255 7.74310 7.93110 8.48698 8.95788 9.53728 11.05137 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.024081 B = 0.004509 C = 0.003863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.452662 B = 6207.684919 C = 7246.212698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.071 4.071 4 C -0.167 4.167 5 C -0.072 4.072 6 C -0.189 4.189 7 C -0.076 4.076 8 C -0.200 4.200 9 C 0.227 3.773 10 N -0.742 5.742 11 C 0.118 3.882 12 C -0.113 4.113 13 C -0.010 4.010 14 C -0.522 4.522 15 H 0.071 0.929 16 C 0.067 3.933 17 N -0.903 5.903 18 Si 0.880 3.120 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.265 1.265 22 H 0.055 0.945 23 H 0.053 0.947 24 H 0.052 0.948 25 H 0.063 0.937 26 H 0.061 0.939 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.115 0.885 30 H 0.112 0.888 31 H 0.116 0.884 32 H 0.121 0.879 33 H 0.398 0.602 34 H 0.055 0.945 35 H 0.056 0.944 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.018 0.982 39 H 0.013 0.987 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.317 1.139 21.574 21.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.109 4.109 4 C -0.171 4.171 5 C -0.091 4.091 6 C -0.209 4.209 7 C -0.095 4.095 8 C -0.222 4.222 9 C 0.122 3.878 10 N -0.370 5.370 11 C -0.005 4.005 12 C -0.150 4.150 13 C -0.048 4.048 14 C -0.560 4.560 15 H 0.089 0.911 16 C -0.135 4.135 17 N -0.542 5.542 18 Si 0.708 3.292 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.190 1.190 22 H 0.074 0.926 23 H 0.072 0.928 24 H 0.071 0.929 25 H 0.082 0.918 26 H 0.080 0.920 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.133 0.867 30 H 0.130 0.870 31 H 0.134 0.866 32 H 0.139 0.861 33 H 0.234 0.766 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.036 0.964 39 H 0.032 0.968 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.415 1.105 21.165 21.331 hybrid contribution 0.635 -0.056 -0.403 0.754 sum 3.050 1.049 20.762 21.012 Atomic orbital electron populations 1.21799 0.95843 1.01669 1.01773 1.21535 0.95435 0.96430 1.02428 1.20415 0.91147 0.97007 1.02288 1.19327 0.95224 1.10599 0.91982 1.20710 0.94026 0.97873 0.96444 1.20781 0.94128 1.08345 0.97657 1.20844 0.99194 0.97303 0.92135 1.20687 0.92289 1.10482 0.98779 1.17739 0.91373 0.92833 0.85873 1.45043 1.08393 1.80159 1.03438 1.21614 0.95742 1.00407 0.82784 1.21663 0.97747 1.01621 0.94018 1.19496 0.96362 0.96451 0.92483 1.21103 0.94410 1.50559 0.89971 0.91051 1.25030 0.97744 0.94488 0.96198 1.69908 1.34275 1.50520 0.99466 0.86770 0.86125 0.78685 0.77657 1.20244 1.21336 1.18985 0.92559 0.92753 0.92907 0.91792 0.92018 0.91679 0.91306 0.86720 0.86957 0.86642 0.86130 0.76582 0.92626 0.92618 0.92230 0.92220 0.96408 0.96837 0.92677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.91 37.16 0.37 -1.00 16 2 C -0.12 -1.22 5.92 -26.73 -0.16 -1.38 16 3 C -0.07 -0.75 4.77 -27.88 -0.13 -0.88 16 4 C -0.17 -2.07 5.15 -104.42 -0.54 -2.60 16 5 C -0.07 -0.82 9.67 -39.62 -0.38 -1.20 16 6 C -0.19 -2.14 10.04 -39.55 -0.40 -2.54 16 7 C -0.08 -0.91 10.04 -39.61 -0.40 -1.31 16 8 C -0.20 -2.72 9.31 -39.38 -0.37 -3.09 16 9 C 0.23 3.17 6.63 -83.79 -0.56 2.61 16 10 N -0.74 -10.56 5.64 -58.63 -0.33 -10.89 16 11 C 0.12 1.87 4.91 -4.04 -0.02 1.85 16 12 C -0.11 -2.12 5.27 -26.73 -0.14 -2.26 16 13 C -0.01 -0.23 4.04 -27.88 -0.11 -0.35 16 14 C -0.52 -14.75 9.66 -34.44 -0.33 -15.08 16 15 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 16 C 0.07 1.93 5.47 -17.82 -0.10 1.84 16 17 N -0.90 -27.75 13.96 55.43 0.77 -26.98 16 18 Si 0.88 21.54 27.47 -169.99 -4.67 16.87 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 22 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.70 6.83 -51.93 -0.35 0.35 16 28 H 0.07 0.64 8.05 -51.93 -0.42 0.22 16 29 H 0.11 1.06 8.06 -52.48 -0.42 0.64 16 30 H 0.11 1.03 8.06 -52.48 -0.42 0.61 16 31 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 32 H 0.12 1.62 6.74 -52.49 -0.35 1.27 16 33 H 0.40 5.31 6.59 -40.82 -0.27 5.05 16 34 H 0.06 0.88 7.94 -51.93 -0.41 0.47 16 35 H 0.06 0.88 7.96 -51.93 -0.41 0.46 16 36 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.02 0.41 7.20 -51.93 -0.37 0.04 16 39 H 0.01 0.31 7.57 -51.93 -0.39 -0.09 16 40 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 324.96 15.07 4.90 4.90 Total: -1.00 -30.02 324.96 -9.40 -39.42 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -6.80 Total: 2.08 kcal Atomic # 6 Polarization: -22.13 SS G_CDS: -3.26 Total: -25.40 kcal Atomic # 7 Polarization: -38.31 SS G_CDS: 0.44 Total: -37.87 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.67 Total: 16.87 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.02 -9.40 -39.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049578577.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.717 kcal (2) G-P(sol) polarization free energy of solvation -30.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds