Wall clock time and date at job start Mon Mar 30 2020 05:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 C 1.50706 * 109.46735 * 180.02562 * 3 2 1 5 5 C 1.38123 * 120.03527 * 264.99242 * 4 3 2 6 6 C 1.38258 * 120.07464 * 179.97438 * 5 4 3 7 7 C 1.38304 * 120.15156 * 0.05194 * 6 5 4 8 8 C 1.38082 * 120.07545 * 359.97438 * 7 6 5 9 9 C 1.38888 * 120.03987 * 84.72448 * 4 3 2 10 10 N 1.39674 * 120.07273 * 0.02562 * 9 4 3 11 11 C 1.46500 * 119.99524 * 180.02562 * 10 9 4 12 12 C 1.53008 * 109.46962 * 179.97438 * 11 10 9 13 13 C 1.53001 * 109.47016 * 180.02562 * 12 11 10 14 14 C 1.50708 * 109.46741 * 180.02562 * 13 12 11 15 15 H 1.08001 * 119.99744 * 0.02562 * 14 13 12 16 16 C 1.37878 * 119.99848 * 180.02562 * 14 13 12 17 17 N 1.31510 * 120.00147 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 119.99753 * 359.97438 * 16 14 13 19 19 H 1.48512 * 109.46822 * 90.00389 * 18 16 14 20 20 H 1.48504 * 109.47073 * 210.00043 * 18 16 14 21 21 H 1.48496 * 109.47419 * 330.00330 * 18 16 14 22 22 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 23 23 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 25 25 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 26 26 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 27 27 H 1.09001 * 109.47194 * 299.99650 * 3 2 1 28 28 H 1.08992 * 109.47399 * 59.99823 * 3 2 1 29 29 H 1.08010 * 119.96232 * 359.97438 * 5 4 3 30 30 H 1.08008 * 119.92449 * 180.02562 * 6 5 4 31 31 H 1.08007 * 119.96462 * 179.97438 * 7 6 5 32 32 H 1.08001 * 120.03808 * 180.02562 * 8 7 6 33 33 H 0.96993 * 120.00204 * 0.02562 * 10 9 4 34 34 H 1.08995 * 109.47410 * 300.00128 * 11 10 9 35 35 H 1.09007 * 109.47196 * 60.00661 * 11 10 9 36 36 H 1.08995 * 109.47191 * 300.00297 * 12 11 10 37 37 H 1.09007 * 109.46596 * 60.00329 * 12 11 10 38 38 H 1.08995 * 109.47208 * 300.00072 * 13 12 11 39 39 H 1.08993 * 109.47206 * 60.00505 * 13 12 11 40 40 H 0.96995 * 120.00449 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4424 -0.0006 5 6 4.2389 1.5466 1.1903 6 6 5.6215 1.5461 1.1907 7 6 6.3165 1.4424 -0.0005 8 6 5.6311 1.3385 -1.1948 9 6 4.2418 1.3320 -1.1982 10 7 3.5453 1.2214 -2.4038 11 6 4.2798 1.1045 -3.6659 12 6 3.2874 0.9977 -4.8256 13 6 4.0545 0.8750 -6.1437 14 6 3.0770 0.7704 -7.2859 15 1 2.0148 0.7901 -7.0912 16 6 3.5386 0.6498 -8.5795 17 7 2.6856 0.5591 -9.5763 18 14 5.3757 0.6165 -8.9162 19 1 5.8610 -0.7865 -8.8760 20 1 5.6436 1.1947 -10.2576 21 1 6.0829 1.4147 -7.8829 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3635 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.6767 1.9563 -0.8900 28 1 1.6766 1.9563 0.8899 29 1 3.6992 1.6285 2.1223 30 1 6.1600 1.6272 2.1234 31 1 7.3965 1.4427 0.0033 32 1 6.1744 1.2572 -2.1246 33 1 2.5754 1.2221 -2.4054 34 1 4.9073 1.9849 -3.8041 35 1 4.9058 0.2124 -3.6407 36 1 2.6603 0.1171 -4.6872 37 1 2.6611 1.8895 -4.8510 38 1 4.6819 1.7554 -6.2823 39 1 4.6805 -0.0169 -6.1180 40 1 3.0103 0.4738 -10.4863 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049578577.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:09 Heat of formation + Delta-G solvation = -23.368860 kcal Electronic energy + Delta-G solvation = -17297.982858 eV Core-core repulsion = 14689.404072 eV Total energy + Delta-G solvation = -2608.578786 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.63396 -37.38128 -35.98830 -35.32727 -33.51627 -31.86478 -30.39319 -28.21130 -27.06226 -24.87649 -23.10120 -22.38151 -21.99948 -21.30963 -18.95747 -18.14095 -17.17263 -16.43203 -16.37572 -16.10540 -15.47044 -15.02869 -14.76137 -14.71926 -14.57531 -14.47155 -13.95789 -13.72042 -13.30873 -13.04208 -12.82660 -12.68809 -12.65158 -12.09501 -12.04335 -11.85361 -11.69016 -11.64672 -11.51635 -11.48765 -11.33875 -10.85970 -10.77742 -9.57626 -8.30774 -8.21602 -6.35591 0.58599 0.81114 1.36291 1.38078 1.49954 2.35548 2.56785 3.03466 3.04885 3.91990 3.98641 4.07643 4.19203 4.20871 4.27056 4.34259 4.49807 4.52363 4.59282 4.71719 4.78839 4.86408 4.89147 4.89937 5.00184 5.00468 5.04537 5.17424 5.26548 5.33883 5.42502 5.45761 5.53750 5.55471 5.62929 5.72719 5.82159 6.08556 6.25424 6.49135 6.72557 6.87358 7.29331 8.86083 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.024081 B = 0.004509 C = 0.003863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.452662 B = 6207.684919 C = 7246.212698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.116 4.116 3 C -0.068 4.068 4 C -0.172 4.172 5 C -0.077 4.077 6 C -0.188 4.188 7 C -0.084 4.084 8 C -0.218 4.218 9 C 0.204 3.796 10 N -0.745 5.745 11 C 0.134 3.866 12 C -0.102 4.102 13 C -0.008 4.008 14 C -0.535 4.535 15 H 0.031 0.969 16 C 0.003 3.997 17 N -0.952 5.952 18 Si 0.952 3.048 19 H -0.266 1.266 20 H -0.285 1.285 21 H -0.244 1.244 22 H 0.050 0.950 23 H 0.056 0.944 24 H 0.065 0.935 25 H 0.045 0.955 26 H 0.065 0.935 27 H 0.058 0.942 28 H 0.085 0.915 29 H 0.139 0.861 30 H 0.137 0.863 31 H 0.135 0.865 32 H 0.117 0.883 33 H 0.400 0.600 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.024 0.976 39 H 0.022 0.978 40 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.069 1.363 23.827 24.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.154 4.154 3 C -0.106 4.106 4 C -0.177 4.177 5 C -0.095 4.095 6 C -0.208 4.208 7 C -0.102 4.102 8 C -0.241 4.241 9 C 0.101 3.899 10 N -0.375 5.375 11 C 0.010 3.990 12 C -0.140 4.140 13 C -0.046 4.046 14 C -0.573 4.573 15 H 0.049 0.951 16 C -0.193 4.193 17 N -0.593 5.593 18 Si 0.775 3.225 19 H -0.191 1.191 20 H -0.210 1.210 21 H -0.167 1.167 22 H 0.069 0.931 23 H 0.075 0.925 24 H 0.084 0.916 25 H 0.064 0.936 26 H 0.084 0.916 27 H 0.077 0.923 28 H 0.103 0.897 29 H 0.157 0.843 30 H 0.155 0.845 31 H 0.153 0.847 32 H 0.135 0.865 33 H 0.236 0.764 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.042 0.958 39 H 0.041 0.959 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.167 1.332 23.461 23.865 hybrid contribution 0.006 -0.121 -1.023 1.030 sum 4.173 1.211 22.438 22.854 Atomic orbital electron populations 1.21784 0.94951 1.01987 1.02177 1.21475 0.96170 0.96042 1.01668 1.20427 0.90160 0.97254 1.02749 1.19589 0.96175 1.10058 0.91863 1.21057 0.94412 0.97063 0.96997 1.21150 0.94365 1.06858 0.98416 1.21133 1.00360 0.96860 0.91858 1.20849 0.92412 1.11383 0.99457 1.17954 0.91749 0.94191 0.86049 1.44853 1.08385 1.81133 1.03118 1.21283 0.94681 1.00636 0.82413 1.21450 0.97877 1.01159 0.93484 1.19439 0.95680 0.96892 0.92611 1.21481 0.93719 1.50068 0.92031 0.95080 1.26043 1.03392 0.94036 0.95870 1.70067 1.36971 1.52135 1.00111 0.85633 0.79401 0.79486 0.77984 1.19095 1.21039 1.16738 0.93056 0.92516 0.91594 0.93634 0.91645 0.92323 0.89678 0.84342 0.84518 0.84713 0.86523 0.76359 0.92426 0.92387 0.92758 0.92757 0.95806 0.95926 0.92465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 9.91 71.98 0.71 -1.80 16 2 C -0.12 -2.21 5.92 30.59 0.18 -2.03 16 3 C -0.07 -1.34 4.77 29.85 0.14 -1.19 16 4 C -0.17 -3.99 5.15 -19.73 -0.10 -4.09 16 5 C -0.08 -1.55 9.67 22.25 0.22 -1.33 16 6 C -0.19 -3.72 10.04 22.29 0.22 -3.49 16 7 C -0.08 -1.83 10.04 22.25 0.22 -1.61 16 8 C -0.22 -5.69 9.31 22.40 0.21 -5.48 16 9 C 0.20 5.50 6.63 38.21 0.25 5.75 16 10 N -0.74 -20.85 5.64 -339.40 -1.91 -22.77 16 11 C 0.13 4.15 4.91 86.38 0.42 4.57 16 12 C -0.10 -3.84 5.27 30.60 0.16 -3.68 16 13 C -0.01 -0.38 4.04 29.85 0.12 -0.26 16 14 C -0.53 -30.87 9.66 25.60 0.25 -30.62 16 15 H 0.03 1.97 7.99 -2.91 -0.02 1.95 16 16 C 0.00 0.19 5.47 84.66 0.46 0.66 16 17 N -0.95 -60.02 13.96 21.45 0.30 -59.72 16 18 Si 0.95 44.00 27.47 68.60 1.88 45.89 16 19 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 20 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 21 H -0.24 -10.37 6.54 99.48 0.65 -9.72 16 22 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 23 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 24 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.06 1.22 6.83 -2.39 -0.02 1.20 16 28 H 0.08 1.37 8.05 -2.39 -0.02 1.35 16 29 H 0.14 2.07 8.06 -2.91 -0.02 2.05 16 30 H 0.14 2.00 8.06 -2.91 -0.02 1.97 16 31 H 0.14 2.32 8.06 -2.91 -0.02 2.30 16 32 H 0.12 3.03 6.74 -2.91 -0.02 3.01 16 33 H 0.40 10.66 6.59 -92.71 -0.61 10.05 16 34 H 0.06 1.76 7.94 -2.39 -0.02 1.74 16 35 H 0.06 1.76 7.96 -2.38 -0.02 1.75 16 36 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.05 2.08 8.14 -2.38 -0.02 2.06 16 38 H 0.02 1.06 7.20 -2.39 -0.02 1.05 16 39 H 0.02 1.00 7.57 -2.39 -0.02 0.98 16 40 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 Total: -1.00 -65.10 324.96 4.07 -61.03 By element: Atomic # 1 Polarization: 19.85 SS G_CDS: 0.33 Total: 20.17 kcal Atomic # 6 Polarization: -48.08 SS G_CDS: 3.48 Total: -44.60 kcal Atomic # 7 Polarization: -80.87 SS G_CDS: -1.61 Total: -82.48 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 1.88 Total: 45.89 kcal Total: -65.10 4.07 -61.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049578577.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.657 kcal (2) G-P(sol) polarization free energy of solvation -65.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds