Wall clock time and date at job start Mon Mar 30 2020 05:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46506 * 119.99755 * 2 1 4 4 C 1.50703 * 109.47289 * 270.00096 * 3 2 1 5 5 H 1.07994 * 119.99399 * 0.02562 * 4 3 2 6 6 C 1.37874 * 119.99789 * 179.97438 * 4 3 2 7 7 N 1.31518 * 120.00144 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 119.99733 * 179.97438 * 6 4 3 9 9 H 1.48490 * 109.47181 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.46716 * 120.00463 * 8 6 4 11 11 H 1.48500 * 109.46999 * 240.00161 * 8 6 4 12 12 C 1.39673 * 120.00285 * 180.02562 * 2 1 3 13 13 C 1.38912 * 120.07371 * 179.71933 * 12 2 1 14 14 C 1.38107 * 119.92242 * 179.77037 * 13 12 2 15 15 C 1.38287 * 120.07758 * 0.50876 * 14 13 12 16 16 C 1.50696 * 119.92805 * 179.72143 * 15 14 13 17 17 C 1.52994 * 109.47020 * 240.02549 * 16 15 14 18 18 C 1.53004 * 109.46940 * 0.02603 * 16 15 14 19 19 C 1.53004 * 109.46890 * 120.02603 * 16 15 14 20 20 C 1.38289 * 120.14534 * 359.74894 * 15 14 13 21 21 C 1.38100 * 120.07703 * 359.97438 * 20 15 14 22 22 H 1.08999 * 109.46923 * 90.00257 * 1 2 3 23 23 H 1.08997 * 109.46694 * 209.99389 * 1 2 3 24 24 H 1.08995 * 109.47258 * 329.99665 * 1 2 3 25 25 H 1.09001 * 109.47060 * 30.00546 * 3 2 1 26 26 H 1.09004 * 109.47073 * 150.00035 * 3 2 1 27 27 H 0.96997 * 119.99752 * 179.97438 * 7 6 4 28 28 H 1.08000 * 120.03937 * 0.02562 * 13 12 2 29 29 H 1.08005 * 119.96225 * 180.25637 * 14 13 12 30 30 H 1.09001 * 109.47470 * 60.00534 * 17 16 15 31 31 H 1.09007 * 109.46859 * 180.02562 * 17 16 15 32 32 H 1.08995 * 109.47546 * 299.99845 * 17 16 15 33 33 H 1.09002 * 109.47226 * 60.00166 * 18 16 15 34 34 H 1.08999 * 109.46602 * 179.97438 * 18 16 15 35 35 H 1.08997 * 109.47125 * 299.99798 * 18 16 15 36 36 H 1.08995 * 109.47077 * 59.99670 * 19 16 15 37 37 H 1.09002 * 109.46933 * 180.02562 * 19 16 15 38 38 H 1.09008 * 109.46897 * 299.99816 * 19 16 15 39 39 H 1.07999 * 119.95876 * 179.97438 * 20 15 14 40 40 H 1.07996 * 120.04085 * 179.97438 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7039 -1.4208 5 1 2.0973 1.0963 -2.2416 6 6 3.1259 2.8781 -1.6727 7 7 3.5531 3.6183 -0.6730 8 14 3.4378 3.4171 -3.4339 9 1 2.8608 2.4166 -4.3672 10 1 2.7997 4.7374 -3.6677 11 1 4.9004 3.5260 -3.6665 12 6 2.1634 -1.2096 -0.0005 13 6 3.5525 -1.2113 -0.0064 14 6 4.2400 -2.4091 -0.0022 15 6 3.5471 -3.6059 -0.0026 16 6 4.3006 -4.9109 -0.0043 17 6 3.9306 -5.7118 -1.2542 18 6 5.8049 -4.6312 -0.0046 19 6 3.9314 -5.7145 1.2442 20 6 2.1642 -3.6077 -0.0022 21 6 1.4705 -2.4136 -0.0007 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3632 -0.8900 0.5137 24 1 -0.3633 0.8899 0.5139 25 1 1.6084 2.0284 0.5139 26 1 3.1499 1.1385 0.5138 27 1 4.0299 4.4442 -0.8502 28 1 4.0943 -0.2770 -0.0102 29 1 5.3200 -2.4112 -0.0025 30 1 4.1936 -5.1394 -2.1437 31 1 4.4753 -6.6560 -1.2552 32 1 2.8590 -5.9111 -1.2541 33 1 6.0685 -4.0606 0.8860 34 1 6.3499 -5.5752 -0.0053 35 1 6.0678 -4.0587 -0.8940 36 1 2.8598 -5.9137 1.2444 37 1 4.4768 -6.6583 1.2433 38 1 4.1951 -5.1438 2.1348 39 1 1.6261 -4.5441 -0.0030 40 1 0.3905 -2.4157 -0.0007 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049816160.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:41 Heat of formation + Delta-G solvation = 14.070662 kcal Electronic energy + Delta-G solvation = -17991.768922 eV Core-core repulsion = 15384.813635 eV Total energy + Delta-G solvation = -2606.955286 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.38225 -37.07981 -34.46114 -32.59978 -30.58703 -28.60882 -27.97516 -27.09015 -26.95248 -24.91423 -22.93934 -21.27019 -20.50170 -18.57138 -16.74957 -16.46065 -15.13483 -14.93041 -14.37270 -14.18304 -14.06690 -13.64593 -13.51578 -12.92863 -12.72091 -12.39721 -12.26053 -12.10509 -11.81576 -11.66661 -11.52835 -11.33326 -11.27600 -10.98123 -10.81942 -10.73561 -10.55258 -10.25862 -10.14934 -9.80213 -9.67322 -8.73576 -8.49852 -8.22047 -6.41970 -5.99372 -4.16158 2.15114 2.32301 3.25716 3.33744 3.39066 4.18332 4.42478 4.56041 4.95745 5.01590 5.22331 5.23037 5.54274 5.59238 5.63784 5.70639 5.73059 5.80491 5.90054 5.99137 6.00456 6.01874 6.13225 6.19334 6.26595 6.28288 6.32269 6.47380 6.48991 6.54054 6.69131 7.00908 7.10063 7.24941 7.30290 7.40937 7.65253 7.82500 8.17492 8.29997 8.52660 8.93452 9.50673 10.96581 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.026057 B = 0.005628 C = 0.005094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.314915 B = 4974.329616 C = 5495.652803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.618 5.618 3 C 0.249 3.751 4 C -0.529 4.529 5 H 0.059 0.941 6 C 0.061 3.939 7 N -0.896 5.896 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.282 1.282 12 C 0.236 3.764 13 C -0.186 4.186 14 C -0.075 4.075 15 C -0.157 4.157 16 C -0.017 4.017 17 C -0.136 4.136 18 C -0.142 4.142 19 C -0.135 4.135 20 C -0.070 4.070 21 C -0.220 4.220 22 H 0.039 0.961 23 H 0.053 0.947 24 H 0.060 0.940 25 H 0.029 0.971 26 H 0.035 0.965 27 H 0.263 0.737 28 H 0.130 0.870 29 H 0.115 0.885 30 H 0.054 0.946 31 H 0.048 0.952 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.049 0.951 35 H 0.057 0.943 36 H 0.053 0.947 37 H 0.048 0.952 38 H 0.054 0.946 39 H 0.106 0.894 40 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.420 -15.008 2.410 15.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.324 5.324 3 C 0.129 3.871 4 C -0.568 4.568 5 H 0.077 0.923 6 C -0.141 4.141 7 N -0.535 5.535 8 Si 0.723 3.277 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.208 1.208 12 C 0.129 3.871 13 C -0.208 4.208 14 C -0.094 4.094 15 C -0.159 4.159 16 C -0.017 4.017 17 C -0.193 4.193 18 C -0.199 4.199 19 C -0.193 4.193 20 C -0.089 4.089 21 C -0.243 4.243 22 H 0.058 0.942 23 H 0.071 0.929 24 H 0.079 0.921 25 H 0.047 0.953 26 H 0.053 0.947 27 H 0.073 0.927 28 H 0.148 0.852 29 H 0.133 0.867 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.124 0.876 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -0.453 -14.603 2.456 14.815 hybrid contribution 0.114 0.572 -1.053 1.203 sum -0.339 -14.031 1.404 14.105 Atomic orbital electron populations 1.21438 0.81600 1.00914 1.00344 1.47053 1.04292 1.04605 1.76424 1.19290 0.92074 0.78746 0.96956 1.21622 1.36127 1.06306 0.92736 0.92254 1.24961 0.95460 0.96302 0.97380 1.69941 1.38512 1.14374 1.30678 0.86473 0.78029 0.78446 0.84727 1.19749 1.20957 1.20840 1.17935 0.91512 0.85923 0.91701 1.20896 0.92675 0.98748 1.08516 1.20833 0.99022 0.91473 0.98041 1.19256 0.93241 0.93465 1.09941 1.19263 0.94484 0.92924 0.95039 1.21878 1.01066 0.98910 0.97462 1.21933 0.94920 1.00970 1.02044 1.21878 1.01061 0.98905 0.97414 1.20451 0.93399 0.96390 0.98664 1.20541 0.98900 0.91445 1.13394 0.94206 0.92890 0.92128 0.95272 0.94685 0.92729 0.85192 0.86715 0.92642 0.93252 0.92811 0.92417 0.93193 0.92348 0.92810 0.93248 0.92715 0.87584 0.87042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.82 10.23 59.85 0.61 2.43 16 2 N -0.62 -13.48 2.99 -181.00 -0.54 -14.02 16 3 C 0.25 6.33 4.95 -5.19 -0.03 6.31 16 4 C -0.53 -14.63 9.39 -34.44 -0.32 -14.96 16 5 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 6 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 7 N -0.90 -25.86 13.29 55.43 0.74 -25.12 16 8 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 9 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 C 0.24 4.88 6.55 -83.79 -0.55 4.33 16 13 C -0.19 -3.84 9.21 -39.38 -0.36 -4.21 16 14 C -0.07 -1.32 8.97 -39.61 -0.36 -1.67 16 15 C -0.16 -2.47 4.76 -104.59 -0.50 -2.97 16 16 C -0.02 -0.22 0.85 -155.66 -0.13 -0.35 16 17 C -0.14 -1.58 8.29 37.15 0.31 -1.27 16 18 C -0.14 -1.66 7.13 37.16 0.26 -1.39 16 19 C -0.14 -1.52 8.29 37.16 0.31 -1.21 16 20 C -0.07 -1.12 8.70 -39.61 -0.34 -1.47 16 21 C -0.22 -3.92 9.21 -39.38 -0.36 -4.29 16 22 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.05 0.81 6.20 -51.93 -0.32 0.49 16 24 H 0.06 1.04 7.89 -51.93 -0.41 0.63 16 25 H 0.03 0.78 7.89 -51.93 -0.41 0.37 16 26 H 0.04 0.94 6.21 -51.93 -0.32 0.62 16 27 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 28 H 0.13 2.96 6.15 -52.49 -0.32 2.63 16 29 H 0.11 1.81 5.88 -52.48 -0.31 1.50 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.05 0.61 7.38 -51.93 -0.38 0.22 16 33 H 0.06 0.68 7.51 -51.93 -0.39 0.29 16 34 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.71 7.51 -51.93 -0.39 0.32 16 36 H 0.05 0.59 7.38 -51.93 -0.38 0.21 16 37 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.05 0.64 8.14 -51.92 -0.42 0.22 16 39 H 0.11 1.44 7.09 -52.49 -0.37 1.07 16 40 H 0.11 1.80 6.14 -52.49 -0.32 1.48 16 LS Contribution 317.32 15.07 4.78 4.78 Total: -1.00 -28.85 317.32 -8.02 -36.87 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -6.42 Total: 0.14 kcal Atomic # 6 Polarization: -17.55 SS G_CDS: -1.56 Total: -19.11 kcal Atomic # 7 Polarization: -39.34 SS G_CDS: 0.20 Total: -39.15 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -28.85 -8.02 -36.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049816160.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.936 kcal (2) G-P(sol) polarization free energy of solvation -28.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds