Wall clock time and date at job start Mon Mar 30 2020 05:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46506 * 119.99755 * 2 1 4 4 C 1.50703 * 109.47289 * 270.00096 * 3 2 1 5 5 H 1.07994 * 119.99399 * 0.02562 * 4 3 2 6 6 C 1.37874 * 119.99789 * 179.97438 * 4 3 2 7 7 N 1.31518 * 120.00144 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 119.99733 * 179.97438 * 6 4 3 9 9 H 1.48490 * 109.47181 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.46716 * 120.00463 * 8 6 4 11 11 H 1.48500 * 109.46999 * 240.00161 * 8 6 4 12 12 C 1.39673 * 120.00285 * 180.02562 * 2 1 3 13 13 C 1.38912 * 120.07371 * 179.71933 * 12 2 1 14 14 C 1.38107 * 119.92242 * 179.77037 * 13 12 2 15 15 C 1.38287 * 120.07758 * 0.50876 * 14 13 12 16 16 C 1.50696 * 119.92805 * 179.72143 * 15 14 13 17 17 C 1.52994 * 109.47020 * 240.02549 * 16 15 14 18 18 C 1.53004 * 109.46940 * 0.02603 * 16 15 14 19 19 C 1.53004 * 109.46890 * 120.02603 * 16 15 14 20 20 C 1.38289 * 120.14534 * 359.74894 * 15 14 13 21 21 C 1.38100 * 120.07703 * 359.97438 * 20 15 14 22 22 H 1.08999 * 109.46923 * 90.00257 * 1 2 3 23 23 H 1.08997 * 109.46694 * 209.99389 * 1 2 3 24 24 H 1.08995 * 109.47258 * 329.99665 * 1 2 3 25 25 H 1.09001 * 109.47060 * 30.00546 * 3 2 1 26 26 H 1.09004 * 109.47073 * 150.00035 * 3 2 1 27 27 H 0.96997 * 119.99752 * 179.97438 * 7 6 4 28 28 H 1.08000 * 120.03937 * 0.02562 * 13 12 2 29 29 H 1.08005 * 119.96225 * 180.25637 * 14 13 12 30 30 H 1.09001 * 109.47470 * 60.00534 * 17 16 15 31 31 H 1.09007 * 109.46859 * 180.02562 * 17 16 15 32 32 H 1.08995 * 109.47546 * 299.99845 * 17 16 15 33 33 H 1.09002 * 109.47226 * 60.00166 * 18 16 15 34 34 H 1.08999 * 109.46602 * 179.97438 * 18 16 15 35 35 H 1.08997 * 109.47125 * 299.99798 * 18 16 15 36 36 H 1.08995 * 109.47077 * 59.99670 * 19 16 15 37 37 H 1.09002 * 109.46933 * 180.02562 * 19 16 15 38 38 H 1.09008 * 109.46897 * 299.99816 * 19 16 15 39 39 H 1.07999 * 119.95876 * 179.97438 * 20 15 14 40 40 H 1.07996 * 120.04085 * 179.97438 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7039 -1.4208 5 1 2.0973 1.0963 -2.2416 6 6 3.1259 2.8781 -1.6727 7 7 3.5531 3.6183 -0.6730 8 14 3.4378 3.4171 -3.4339 9 1 2.8608 2.4166 -4.3672 10 1 2.7997 4.7374 -3.6677 11 1 4.9004 3.5260 -3.6665 12 6 2.1634 -1.2096 -0.0005 13 6 3.5525 -1.2113 -0.0064 14 6 4.2400 -2.4091 -0.0022 15 6 3.5471 -3.6059 -0.0026 16 6 4.3006 -4.9109 -0.0043 17 6 3.9306 -5.7118 -1.2542 18 6 5.8049 -4.6312 -0.0046 19 6 3.9314 -5.7145 1.2442 20 6 2.1642 -3.6077 -0.0022 21 6 1.4705 -2.4136 -0.0007 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3632 -0.8900 0.5137 24 1 -0.3633 0.8899 0.5139 25 1 1.6084 2.0284 0.5139 26 1 3.1499 1.1385 0.5138 27 1 4.0299 4.4442 -0.8502 28 1 4.0943 -0.2770 -0.0102 29 1 5.3200 -2.4112 -0.0025 30 1 4.1936 -5.1394 -2.1437 31 1 4.4753 -6.6560 -1.2552 32 1 2.8590 -5.9111 -1.2541 33 1 6.0685 -4.0606 0.8860 34 1 6.3499 -5.5752 -0.0053 35 1 6.0678 -4.0587 -0.8940 36 1 2.8598 -5.9137 1.2444 37 1 4.4768 -6.6583 1.2433 38 1 4.1951 -5.1438 2.1348 39 1 1.6261 -4.5441 -0.0030 40 1 0.3905 -2.4157 -0.0007 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049816160.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:41 Heat of formation + Delta-G solvation = 0.022411 kcal Electronic energy + Delta-G solvation = -17992.378100 eV Core-core repulsion = 15384.813635 eV Total energy + Delta-G solvation = -2607.564464 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.73853 -38.44391 -35.94243 -34.60061 -32.02967 -30.16193 -29.60604 -28.03919 -27.96090 -26.60248 -24.68753 -22.69532 -21.96461 -19.80131 -18.66294 -18.16240 -16.86797 -16.25687 -15.98689 -15.56040 -15.35419 -14.96548 -14.81478 -14.40002 -14.10508 -14.00081 -13.50782 -13.41720 -13.15432 -13.08569 -12.84470 -12.75693 -12.57917 -12.51894 -12.44385 -12.23596 -11.82996 -11.79716 -11.63492 -11.36305 -11.11839 -10.65361 -10.30974 -9.65243 -8.36451 -7.77602 -6.38541 0.71202 0.90301 1.34891 1.36312 1.48851 2.33620 2.64263 3.04834 3.13630 3.91016 3.97780 4.20635 4.26916 4.30405 4.41168 4.55123 4.64274 4.71526 4.78451 4.86450 4.90071 4.91533 5.00618 5.00904 5.10135 5.12519 5.13685 5.17624 5.23931 5.30315 5.36058 5.48771 5.59031 5.61551 5.70733 5.78803 6.00126 6.06731 6.23609 6.50351 6.82593 6.94974 7.33525 8.82423 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.026057 B = 0.005628 C = 0.005094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.314915 B = 4974.329616 C = 5495.652803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.634 5.634 3 C 0.266 3.734 4 C -0.541 4.541 5 H 0.047 0.953 6 C 0.013 3.987 7 N -0.927 5.927 8 Si 0.962 3.038 9 H -0.272 1.272 10 H -0.273 1.273 11 H -0.276 1.276 12 C 0.205 3.795 13 C -0.215 4.215 14 C -0.080 4.080 15 C -0.145 4.145 16 C -0.019 4.019 17 C -0.134 4.134 18 C -0.143 4.143 19 C -0.133 4.133 20 C -0.066 4.066 21 C -0.215 4.215 22 H 0.038 0.962 23 H 0.084 0.916 24 H 0.061 0.939 25 H 0.010 0.990 26 H 0.010 0.990 27 H 0.267 0.733 28 H 0.093 0.907 29 H 0.127 0.873 30 H 0.042 0.958 31 H 0.071 0.929 32 H 0.059 0.941 33 H 0.052 0.948 34 H 0.071 0.929 35 H 0.048 0.952 36 H 0.059 0.941 37 H 0.070 0.930 38 H 0.045 0.955 39 H 0.141 0.859 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.792 -17.786 1.718 17.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.342 5.342 3 C 0.145 3.855 4 C -0.579 4.579 5 H 0.065 0.935 6 C -0.187 4.187 7 N -0.567 5.567 8 Si 0.787 3.213 9 H -0.196 1.196 10 H -0.198 1.198 11 H -0.202 1.202 12 C 0.101 3.899 13 C -0.238 4.238 14 C -0.099 4.099 15 C -0.147 4.147 16 C -0.019 4.019 17 C -0.192 4.192 18 C -0.200 4.200 19 C -0.190 4.190 20 C -0.085 4.085 21 C -0.238 4.238 22 H 0.056 0.944 23 H 0.102 0.898 24 H 0.080 0.920 25 H 0.028 0.972 26 H 0.028 0.972 27 H 0.076 0.924 28 H 0.111 0.889 29 H 0.144 0.856 30 H 0.061 0.939 31 H 0.090 0.910 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.090 0.910 35 H 0.067 0.933 36 H 0.078 0.922 37 H 0.089 0.911 38 H 0.065 0.935 39 H 0.159 0.841 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -0.832 -17.417 1.770 17.526 hybrid contribution 0.277 1.302 -0.793 1.549 sum -0.555 -16.115 0.977 16.154 Atomic orbital electron populations 1.21574 0.79474 1.02509 1.00693 1.46923 1.05558 1.03688 1.78018 1.18786 0.91068 0.80267 0.95408 1.21795 1.36333 1.06464 0.93342 0.93499 1.25780 0.95053 0.96281 1.01538 1.70044 1.39060 1.14829 1.32759 0.85444 0.78080 0.78182 0.79593 1.19639 1.19837 1.20178 1.18215 0.91632 0.86515 0.93539 1.20803 0.93249 0.98515 1.11229 1.21016 0.99779 0.91249 0.97819 1.19708 0.93693 0.94285 1.06995 1.19372 0.94473 0.91408 0.96636 1.21866 1.01806 0.99466 0.96016 1.21944 0.94703 1.01973 1.01384 1.21857 1.01807 0.99421 0.95936 1.20858 0.93587 0.97052 0.96973 1.20808 0.99996 0.90771 1.12207 0.94373 0.89805 0.92035 0.97232 0.97238 0.92365 0.88867 0.85564 0.93883 0.91037 0.92211 0.92941 0.90965 0.93259 0.92184 0.91100 0.93548 0.84116 0.85018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.60 10.23 127.77 1.31 4.90 16 2 N -0.63 -28.60 2.99 -726.55 -2.17 -30.78 16 3 C 0.27 14.36 4.95 85.63 0.42 14.78 16 4 C -0.54 -31.12 9.39 25.60 0.24 -30.88 16 5 H 0.05 2.76 7.81 -2.91 -0.02 2.73 16 6 C 0.01 0.72 5.46 84.65 0.46 1.18 16 7 N -0.93 -55.16 13.29 21.45 0.28 -54.88 16 8 Si 0.96 44.81 29.54 68.60 2.03 46.83 16 9 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 10 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 11 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 12 C 0.21 8.66 6.55 38.22 0.25 8.91 16 13 C -0.22 -9.35 9.21 22.40 0.21 -9.14 16 14 C -0.08 -2.84 8.97 22.25 0.20 -2.64 16 15 C -0.14 -4.28 4.76 -19.84 -0.09 -4.38 16 16 C -0.02 -0.42 0.85 -52.93 -0.05 -0.46 16 17 C -0.13 -2.62 8.29 71.98 0.60 -2.02 16 18 C -0.14 -3.01 7.13 71.98 0.51 -2.50 16 19 C -0.13 -2.48 8.29 71.98 0.60 -1.89 16 20 C -0.07 -1.93 8.70 22.25 0.19 -1.74 16 21 C -0.22 -7.33 9.21 22.40 0.21 -7.12 16 22 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 23 H 0.08 2.43 6.20 -2.39 -0.01 2.41 16 24 H 0.06 2.14 7.89 -2.39 -0.02 2.12 16 25 H 0.01 0.55 7.89 -2.39 -0.02 0.53 16 26 H 0.01 0.56 6.21 -2.38 -0.01 0.55 16 27 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 28 H 0.09 4.66 6.15 -2.91 -0.02 4.64 16 29 H 0.13 4.04 5.88 -2.91 -0.02 4.02 16 30 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 32 H 0.06 1.10 7.38 -2.39 -0.02 1.08 16 33 H 0.05 1.15 7.51 -2.39 -0.02 1.13 16 34 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.05 1.12 7.51 -2.39 -0.02 1.10 16 36 H 0.06 1.05 7.38 -2.39 -0.02 1.03 16 37 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 39 H 0.14 3.16 7.09 -2.91 -0.02 3.14 16 40 H 0.13 3.88 6.14 -2.91 -0.02 3.86 16 Total: -1.00 -64.16 317.32 6.19 -57.96 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: 1.00 Total: 13.84 kcal Atomic # 6 Polarization: -38.04 SS G_CDS: 5.06 Total: -32.99 kcal Atomic # 7 Polarization: -83.76 SS G_CDS: -1.89 Total: -85.65 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.83 kcal Total: -64.16 6.19 -57.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049816160.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.985 kcal (2) G-P(sol) polarization free energy of solvation -64.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds