Wall clock time and date at job start Mon Mar 30 2020 05:37:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50699 * 109.46907 * 2 1 4 4 C 1.38284 * 119.92601 * 90.00578 * 3 2 1 5 5 C 1.38101 * 120.07653 * 180.02562 * 4 3 2 6 6 C 1.38912 * 119.92501 * 359.97438 * 5 4 3 7 7 N 1.39673 * 120.07610 * 179.97438 * 6 5 4 8 8 C 1.46499 * 120.00111 * 0.02562 * 7 6 5 9 9 C 1.46504 * 120.00227 * 179.97438 * 7 6 5 10 10 C 1.53006 * 109.46883 * 90.00225 * 9 7 6 11 11 C 1.52997 * 109.47127 * 180.02562 * 10 9 7 12 12 C 1.50696 * 109.47055 * 180.02562 * 11 10 9 13 13 H 1.08000 * 120.00290 * 359.97438 * 12 11 10 14 14 C 1.37879 * 120.00258 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99506 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00308 * 179.97438 * 14 12 11 17 17 H 1.48495 * 109.46931 * 89.99338 * 16 14 12 18 18 H 1.48500 * 109.46738 * 209.99579 * 16 14 12 19 19 H 1.48501 * 109.46755 * 329.99324 * 16 14 12 20 20 C 1.38913 * 119.85192 * 0.25530 * 6 5 4 21 21 C 1.38111 * 119.92221 * 359.48740 * 20 6 5 22 22 H 1.09001 * 109.47294 * 59.99446 * 1 2 3 23 23 H 1.08993 * 109.47573 * 180.02562 * 1 2 3 24 24 H 1.09010 * 109.47207 * 300.00327 * 1 2 3 25 25 H 1.08997 * 109.46982 * 240.00005 * 2 1 3 26 26 H 1.08998 * 109.46897 * 119.99906 * 2 1 3 27 27 H 1.07997 * 119.96152 * 0.03388 * 4 3 2 28 28 H 1.07995 * 120.04193 * 179.97438 * 5 4 3 29 29 H 1.09003 * 109.47033 * 269.99798 * 8 7 6 30 30 H 1.09000 * 109.47241 * 29.99616 * 8 7 6 31 31 H 1.09000 * 109.47127 * 149.99375 * 8 7 6 32 32 H 1.09001 * 109.46891 * 330.00659 * 9 7 6 33 33 H 1.08993 * 109.47378 * 210.00031 * 9 7 6 34 34 H 1.09001 * 109.46801 * 300.00349 * 10 9 7 35 35 H 1.09001 * 109.46998 * 59.99945 * 10 9 7 36 36 H 1.08996 * 109.46952 * 300.00302 * 11 10 9 37 37 H 1.09001 * 109.46832 * 60.00321 * 11 10 9 38 38 H 0.96999 * 119.99910 * 180.02562 * 15 14 12 39 39 H 1.07998 * 120.04325 * 179.72671 * 20 6 5 40 40 H 1.07999 * 119.96324 * 180.25535 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2623 2.0712 1.1985 5 6 2.7221 3.3734 1.2021 6 6 2.9540 4.0298 0.0000 7 7 3.4185 5.3470 0.0000 8 6 3.6623 6.0378 1.2687 9 6 3.6631 6.0376 -1.2688 10 6 2.3878 6.7577 -1.7115 11 6 2.6430 7.4784 -3.0368 12 6 1.3871 8.1882 -3.4725 13 1 0.4959 8.1307 -2.8652 14 6 1.3754 8.9101 -4.6471 15 7 2.4605 8.9797 -5.3870 16 14 -0.1816 9.7894 -5.1876 17 1 -0.1909 11.1663 -4.6316 18 1 -0.2240 9.8541 -6.6706 19 1 -1.3675 9.0467 -4.6903 20 6 2.7174 3.3752 -1.2021 21 6 2.2626 2.0711 -1.1986 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 2.0824 1.5602 2.1327 28 1 2.9012 3.8810 2.1384 29 1 2.7535 6.5510 1.5834 30 1 3.9510 5.3114 2.0283 31 1 4.4637 6.7651 1.1383 32 1 3.9523 5.3109 -2.0280 33 1 4.4643 6.7649 -1.1380 34 1 1.5866 6.0304 -1.8422 35 1 2.0986 7.4843 -0.9522 36 1 3.4444 8.2056 -2.9065 37 1 2.9319 6.7514 -3.7959 38 1 2.4524 9.4879 -6.2131 39 1 2.8924 3.8840 -2.1385 40 1 2.0824 1.5601 -2.1328 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049986505.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:26 Heat of formation + Delta-G solvation = 5.849723 kcal Electronic energy + Delta-G solvation = -17371.096982 eV Core-core repulsion = 14763.785209 eV Total energy + Delta-G solvation = -2607.311773 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.53714 -36.84511 -34.01557 -33.02521 -31.58947 -30.59862 -28.66270 -27.46467 -25.31383 -23.68192 -22.24392 -21.95640 -20.39077 -19.75767 -17.21842 -16.31508 -15.62947 -15.11511 -14.58101 -14.42202 -14.24056 -14.10904 -13.65991 -13.25154 -13.10146 -12.98697 -12.38716 -12.33687 -12.05343 -11.80831 -11.71313 -11.30649 -11.10063 -10.87211 -10.81631 -10.76755 -10.59539 -10.40255 -9.73804 -9.62043 -9.27268 -9.02967 -8.67936 -8.35415 -6.90542 -6.00405 -4.02678 1.68592 1.82710 3.31790 3.37935 3.41240 3.45305 4.08984 4.46283 4.92796 4.96400 5.13023 5.19244 5.30658 5.35381 5.41644 5.52464 5.58570 5.60593 5.66823 5.74450 5.84705 5.86761 5.96203 6.02160 6.07356 6.18997 6.20701 6.24518 6.52669 6.59392 6.68513 6.81940 6.93753 7.08311 7.14421 7.59586 7.65799 7.76486 7.84139 7.99021 8.42803 9.04018 9.61488 11.10764 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.023443 B = 0.004466 C = 0.004005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.102257 B = 6268.105854 C = 6990.348947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.073 4.073 3 C -0.155 4.155 4 C -0.072 4.072 5 C -0.205 4.205 6 C 0.222 3.778 7 N -0.630 5.630 8 C 0.095 3.905 9 C 0.120 3.880 10 C -0.125 4.125 11 C 0.023 3.977 12 C -0.519 4.519 13 H 0.054 0.946 14 C 0.057 3.943 15 N -0.896 5.896 16 Si 0.891 3.109 17 H -0.281 1.281 18 H -0.286 1.286 19 H -0.274 1.274 20 C -0.191 4.191 21 C -0.068 4.068 22 H 0.055 0.945 23 H 0.051 0.949 24 H 0.053 0.947 25 H 0.064 0.936 26 H 0.062 0.938 27 H 0.113 0.887 28 H 0.117 0.883 29 H 0.046 0.954 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.051 0.949 35 H 0.047 0.953 36 H 0.015 0.985 37 H 0.016 0.984 38 H 0.260 0.740 39 H 0.127 0.873 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.415 -14.136 12.860 19.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.111 4.111 3 C -0.157 4.157 4 C -0.091 4.091 5 C -0.228 4.228 6 C 0.119 3.881 7 N -0.339 5.339 8 C -0.049 4.049 9 C -0.002 4.002 10 C -0.164 4.164 11 C -0.014 4.014 12 C -0.557 4.557 13 H 0.072 0.928 14 C -0.144 4.144 15 N -0.536 5.536 16 Si 0.719 3.281 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.199 1.199 20 C -0.214 4.214 21 C -0.087 4.087 22 H 0.074 0.926 23 H 0.070 0.930 24 H 0.072 0.928 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.131 0.869 28 H 0.135 0.865 29 H 0.064 0.936 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.034 0.966 37 H 0.035 0.965 38 H 0.070 0.930 39 H 0.145 0.855 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 1.567 -13.850 12.701 18.858 hybrid contribution -0.856 0.735 -0.392 1.195 sum 0.710 -13.115 12.310 18.001 Atomic orbital electron populations 1.21773 0.95452 1.00990 1.02219 1.20359 0.95630 0.93170 1.01894 1.19539 1.06314 0.96677 0.93148 1.20639 0.97574 0.93862 0.97017 1.20600 1.09699 0.96231 0.96235 1.17880 0.92160 0.84266 0.93802 1.46709 1.70603 1.10384 1.06194 1.21581 1.00601 0.96795 0.85877 1.21751 0.98866 0.95699 0.83912 1.22041 0.95738 0.98718 0.99932 1.19048 0.97093 0.94948 0.90357 1.21232 0.97581 1.30644 1.06262 0.92788 1.25017 0.96188 0.96607 0.96604 1.69962 1.27566 1.41757 1.14270 0.86603 0.83716 0.80041 0.77727 1.20677 1.21182 1.19877 1.20823 1.07658 0.95881 0.96995 1.20747 0.96902 0.93849 0.97192 0.92562 0.93035 0.92799 0.91723 0.91889 0.86888 0.86475 0.93590 0.91939 0.91651 0.91096 0.91290 0.93070 0.93372 0.96634 0.96550 0.93010 0.85546 0.86562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.89 37.16 0.37 -1.04 16 2 C -0.07 -0.74 6.06 -27.88 -0.17 -0.91 16 3 C -0.15 -1.97 5.14 -104.59 -0.54 -2.51 16 4 C -0.07 -0.91 9.69 -39.61 -0.38 -1.30 16 5 C -0.21 -2.81 9.21 -39.38 -0.36 -3.18 16 6 C 0.22 3.46 6.55 -83.79 -0.55 2.91 16 7 N -0.63 -9.77 3.01 -179.61 -0.54 -10.31 16 8 C 0.09 1.18 10.23 59.85 0.61 1.79 16 9 C 0.12 2.07 5.20 -4.04 -0.02 2.04 16 10 C -0.13 -2.62 5.48 -26.73 -0.15 -2.77 16 11 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16 12 C -0.52 -14.86 9.11 -34.44 -0.31 -15.17 16 13 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 14 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 15 N -0.90 -26.99 13.29 55.43 0.74 -26.25 16 16 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 17 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 19 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 20 C -0.19 -3.02 9.20 -39.38 -0.36 -3.38 16 21 C -0.07 -0.95 9.69 -39.61 -0.38 -1.34 16 22 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.05 0.52 8.14 -51.92 -0.42 0.10 16 25 H 0.06 0.61 8.08 -51.93 -0.42 0.19 16 26 H 0.06 0.56 8.08 -51.93 -0.42 0.14 16 27 H 0.11 1.17 8.06 -52.49 -0.42 0.74 16 28 H 0.12 1.40 6.14 -52.49 -0.32 1.08 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.66 6.20 -51.93 -0.32 0.34 16 31 H 0.06 0.74 7.89 -51.93 -0.41 0.33 16 32 H 0.07 1.22 6.21 -51.93 -0.32 0.89 16 33 H 0.07 1.13 7.89 -51.93 -0.41 0.72 16 34 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 39 H 0.13 2.08 6.15 -52.49 -0.32 1.76 16 40 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 LS Contribution 326.99 15.07 4.93 4.93 Total: -1.00 -30.57 326.99 -9.10 -39.67 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: -6.72 Total: -2.04 kcal Atomic # 6 Polarization: -20.35 SS G_CDS: -2.48 Total: -22.83 kcal Atomic # 7 Polarization: -36.76 SS G_CDS: 0.20 Total: -36.56 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.57 -9.10 -39.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049986505.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.515 kcal (2) G-P(sol) polarization free energy of solvation -30.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds