Wall clock time and date at job start Mon Mar 30 2020 05:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50699 * 109.46907 * 2 1 4 4 C 1.38284 * 119.92601 * 90.00578 * 3 2 1 5 5 C 1.38101 * 120.07653 * 180.02562 * 4 3 2 6 6 C 1.38912 * 119.92501 * 359.97438 * 5 4 3 7 7 N 1.39673 * 120.07610 * 179.97438 * 6 5 4 8 8 C 1.46499 * 120.00111 * 0.02562 * 7 6 5 9 9 C 1.46504 * 120.00227 * 179.97438 * 7 6 5 10 10 C 1.53006 * 109.46883 * 90.00225 * 9 7 6 11 11 C 1.52997 * 109.47127 * 180.02562 * 10 9 7 12 12 C 1.50696 * 109.47055 * 180.02562 * 11 10 9 13 13 H 1.08000 * 120.00290 * 359.97438 * 12 11 10 14 14 C 1.37879 * 120.00258 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99506 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00308 * 179.97438 * 14 12 11 17 17 H 1.48495 * 109.46931 * 89.99338 * 16 14 12 18 18 H 1.48500 * 109.46738 * 209.99579 * 16 14 12 19 19 H 1.48501 * 109.46755 * 329.99324 * 16 14 12 20 20 C 1.38913 * 119.85192 * 0.25530 * 6 5 4 21 21 C 1.38111 * 119.92221 * 359.48740 * 20 6 5 22 22 H 1.09001 * 109.47294 * 59.99446 * 1 2 3 23 23 H 1.08993 * 109.47573 * 180.02562 * 1 2 3 24 24 H 1.09010 * 109.47207 * 300.00327 * 1 2 3 25 25 H 1.08997 * 109.46982 * 240.00005 * 2 1 3 26 26 H 1.08998 * 109.46897 * 119.99906 * 2 1 3 27 27 H 1.07997 * 119.96152 * 0.03388 * 4 3 2 28 28 H 1.07995 * 120.04193 * 179.97438 * 5 4 3 29 29 H 1.09003 * 109.47033 * 269.99798 * 8 7 6 30 30 H 1.09000 * 109.47241 * 29.99616 * 8 7 6 31 31 H 1.09000 * 109.47127 * 149.99375 * 8 7 6 32 32 H 1.09001 * 109.46891 * 330.00659 * 9 7 6 33 33 H 1.08993 * 109.47378 * 210.00031 * 9 7 6 34 34 H 1.09001 * 109.46801 * 300.00349 * 10 9 7 35 35 H 1.09001 * 109.46998 * 59.99945 * 10 9 7 36 36 H 1.08996 * 109.46952 * 300.00302 * 11 10 9 37 37 H 1.09001 * 109.46832 * 60.00321 * 11 10 9 38 38 H 0.96999 * 119.99910 * 180.02562 * 15 14 12 39 39 H 1.07998 * 120.04325 * 179.72671 * 20 6 5 40 40 H 1.07999 * 119.96324 * 180.25535 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2623 2.0712 1.1985 5 6 2.7221 3.3734 1.2021 6 6 2.9540 4.0298 0.0000 7 7 3.4185 5.3470 0.0000 8 6 3.6623 6.0378 1.2687 9 6 3.6631 6.0376 -1.2688 10 6 2.3878 6.7577 -1.7115 11 6 2.6430 7.4784 -3.0368 12 6 1.3871 8.1882 -3.4725 13 1 0.4959 8.1307 -2.8652 14 6 1.3754 8.9101 -4.6471 15 7 2.4605 8.9797 -5.3870 16 14 -0.1816 9.7894 -5.1876 17 1 -0.1909 11.1663 -4.6316 18 1 -0.2240 9.8541 -6.6706 19 1 -1.3675 9.0467 -4.6903 20 6 2.7174 3.3752 -1.2021 21 6 2.2626 2.0711 -1.1986 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 2.0824 1.5602 2.1327 28 1 2.9012 3.8810 2.1384 29 1 2.7535 6.5510 1.5834 30 1 3.9510 5.3114 2.0283 31 1 4.4637 6.7651 1.1383 32 1 3.9523 5.3109 -2.0280 33 1 4.4643 6.7649 -1.1380 34 1 1.5866 6.0304 -1.8422 35 1 2.0986 7.4843 -0.9522 36 1 3.4444 8.2056 -2.9065 37 1 2.9319 6.7514 -3.7959 38 1 2.4524 9.4879 -6.2131 39 1 2.8924 3.8840 -2.1385 40 1 2.0824 1.5601 -2.1328 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049986505.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:25 Heat of formation + Delta-G solvation = -8.901262 kcal Electronic energy + Delta-G solvation = -17371.736632 eV Core-core repulsion = 14763.785209 eV Total energy + Delta-G solvation = -2607.951424 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.63091 -38.03580 -35.80763 -34.28600 -33.23522 -31.79618 -29.68190 -29.07443 -26.70332 -25.13556 -23.31028 -23.21187 -22.05754 -20.92722 -18.62572 -18.20501 -16.86171 -16.50190 -16.12096 -15.72833 -15.51180 -15.16981 -14.92100 -14.44398 -14.24052 -14.09276 -14.01636 -13.69769 -13.32294 -13.06887 -12.86422 -12.78590 -12.58506 -12.56317 -12.45322 -11.95980 -11.71919 -11.59446 -11.53646 -11.34261 -11.29155 -10.57759 -10.43219 -9.75876 -8.24266 -8.03912 -6.33543 0.60434 0.75186 1.37710 1.39006 1.50281 2.26949 2.40128 3.01389 3.10453 3.93088 4.01114 4.07849 4.20623 4.29776 4.35693 4.43389 4.56876 4.62526 4.64602 4.66698 4.74684 4.79010 4.84590 4.90993 4.96831 5.06265 5.14614 5.16324 5.18553 5.25698 5.45292 5.46895 5.51099 5.61999 5.69408 5.81982 5.90870 6.09099 6.21678 6.42897 6.67603 6.82143 7.35589 8.89109 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.023443 B = 0.004466 C = 0.004005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.102257 B = 6268.105854 C = 6990.348947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.072 4.072 3 C -0.153 4.153 4 C -0.073 4.073 5 C -0.205 4.205 6 C 0.199 3.801 7 N -0.637 5.637 8 C 0.091 3.909 9 C 0.132 3.868 10 C -0.106 4.106 11 C 0.028 3.972 12 C -0.545 4.545 13 H 0.053 0.947 14 C 0.003 3.997 15 N -0.931 5.931 16 Si 0.963 3.037 17 H -0.270 1.270 18 H -0.279 1.279 19 H -0.267 1.267 20 C -0.216 4.216 21 C -0.080 4.080 22 H 0.042 0.958 23 H 0.069 0.931 24 H 0.052 0.948 25 H 0.070 0.930 26 H 0.081 0.919 27 H 0.143 0.857 28 H 0.137 0.863 29 H 0.044 0.956 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.078 0.922 34 H 0.037 0.963 35 H 0.046 0.954 36 H -0.002 1.002 37 H -0.007 1.007 38 H 0.265 0.735 39 H 0.107 0.893 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.540 -15.109 14.532 20.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.109 4.109 3 C -0.155 4.155 4 C -0.092 4.092 5 C -0.227 4.227 6 C 0.097 3.903 7 N -0.347 5.347 8 C -0.051 4.051 9 C 0.009 3.991 10 C -0.145 4.145 11 C -0.009 4.009 12 C -0.583 4.583 13 H 0.071 0.929 14 C -0.195 4.195 15 N -0.571 5.571 16 Si 0.787 3.213 17 H -0.196 1.196 18 H -0.204 1.204 19 H -0.191 1.191 20 C -0.239 4.239 21 C -0.098 4.098 22 H 0.061 0.939 23 H 0.088 0.912 24 H 0.071 0.929 25 H 0.089 0.911 26 H 0.099 0.901 27 H 0.161 0.839 28 H 0.155 0.845 29 H 0.062 0.938 30 H 0.103 0.897 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.056 0.944 35 H 0.065 0.935 36 H 0.016 0.984 37 H 0.012 0.988 38 H 0.073 0.927 39 H 0.125 0.875 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 0.689 -14.842 14.400 20.691 hybrid contribution -0.583 0.959 -0.898 1.437 sum 0.106 -13.883 13.502 19.367 Atomic orbital electron populations 1.21757 0.95024 1.02010 1.01500 1.20418 0.95879 0.91493 1.03130 1.19907 1.05000 0.97943 0.92663 1.21030 0.96419 0.93537 0.98183 1.20878 1.08952 0.96713 0.96172 1.18109 0.93207 0.84494 0.94462 1.46679 1.71214 1.10573 1.06199 1.21758 1.00922 0.97468 0.84993 1.21410 0.96882 0.95592 0.85214 1.21769 0.97360 0.98042 0.97324 1.18926 0.95638 0.94136 0.92240 1.21645 0.98463 1.31348 1.06851 0.92882 1.25937 0.99734 0.97298 0.96560 1.70081 1.29779 1.42479 1.14742 0.85482 0.79377 0.78958 0.77462 1.19562 1.20441 1.19143 1.20853 1.09416 0.96965 0.96644 1.20949 0.96990 0.93410 0.98486 0.93884 0.91187 0.92925 0.91124 0.90069 0.83948 0.84532 0.93764 0.89722 0.90686 0.91633 0.90350 0.94402 0.93503 0.98387 0.98813 0.92663 0.87546 0.85704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.46 9.89 71.98 0.71 -1.75 16 2 C -0.07 -1.27 6.06 29.85 0.18 -1.08 16 3 C -0.15 -3.63 5.14 -19.84 -0.10 -3.73 16 4 C -0.07 -1.66 9.69 22.25 0.22 -1.44 16 5 C -0.20 -5.21 9.21 22.40 0.21 -5.01 16 6 C 0.20 6.14 6.55 38.22 0.25 6.39 16 7 N -0.64 -19.53 3.01 -722.18 -2.17 -21.70 16 8 C 0.09 2.12 10.23 127.77 1.31 3.43 16 9 C 0.13 4.67 5.20 86.38 0.45 5.12 16 10 C -0.11 -4.57 5.48 30.60 0.17 -4.41 16 11 C 0.03 1.52 4.97 29.85 0.15 1.66 16 12 C -0.55 -31.91 9.11 25.60 0.23 -31.67 16 13 H 0.05 3.04 7.74 -2.91 -0.02 3.01 16 14 C 0.00 0.16 5.46 84.65 0.46 0.62 16 15 N -0.93 -57.03 13.29 21.45 0.28 -56.75 16 16 Si 0.96 44.99 29.54 68.60 2.03 47.02 16 17 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 18 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 19 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 20 C -0.22 -7.01 9.20 22.40 0.21 -6.80 16 21 C -0.08 -2.22 9.69 22.25 0.22 -2.00 16 22 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 23 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 24 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 25 H 0.07 1.17 8.08 -2.39 -0.02 1.15 16 26 H 0.08 1.16 8.08 -2.39 -0.02 1.14 16 27 H 0.14 2.37 8.06 -2.91 -0.02 2.34 16 28 H 0.14 2.86 6.14 -2.91 -0.02 2.84 16 29 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.08 1.58 6.20 -2.39 -0.01 1.56 16 31 H 0.07 1.59 7.89 -2.39 -0.02 1.57 16 32 H 0.07 2.37 6.21 -2.39 -0.01 2.35 16 33 H 0.08 2.59 7.89 -2.39 -0.02 2.58 16 34 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 37 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 38 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 39 H 0.11 3.77 6.15 -2.91 -0.02 3.75 16 40 H 0.13 3.10 8.06 -2.91 -0.02 3.08 16 Total: -1.00 -66.10 326.99 5.78 -60.33 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: 0.98 Total: 11.77 kcal Atomic # 6 Polarization: -45.33 SS G_CDS: 4.65 Total: -40.67 kcal Atomic # 7 Polarization: -76.56 SS G_CDS: -1.89 Total: -78.44 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -66.10 5.78 -60.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049986505.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.424 kcal (2) G-P(sol) polarization free energy of solvation -66.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds