Wall clock time and date at job start Mon Mar 30 2020 06:28:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46871 * 2 1 4 4 H 1.08990 * 109.47355 * 304.99798 * 3 2 1 5 5 C 1.53005 * 109.47165 * 65.00306 * 3 2 1 6 6 C 1.53000 * 109.46776 * 184.99808 * 3 2 1 7 7 N 1.46499 * 109.46840 * 174.99842 * 6 3 2 8 8 C 1.46502 * 119.99658 * 90.00442 * 7 6 3 9 9 C 1.50701 * 109.47310 * 89.99973 * 8 7 6 10 10 H 1.07997 * 119.99940 * 359.97438 * 9 8 7 11 11 C 1.37877 * 120.00037 * 179.97438 * 9 8 7 12 12 N 1.31515 * 120.00056 * 179.97438 * 11 9 8 13 13 Si 1.86796 * 120.00093 * 359.97438 * 11 9 8 14 14 H 1.48503 * 109.46924 * 89.99863 * 13 11 9 15 15 H 1.48499 * 109.47472 * 209.99850 * 13 11 9 16 16 H 1.48501 * 109.47283 * 330.00165 * 13 11 9 17 17 C 1.39668 * 120.00213 * 270.00040 * 7 6 3 18 18 C 1.38909 * 120.07641 * 359.72777 * 17 7 6 19 19 C 1.38106 * 119.92498 * 179.76808 * 18 17 7 20 20 C 1.38284 * 120.07617 * 0.50379 * 19 18 17 21 21 C 1.38285 * 120.14958 * 359.75089 * 20 19 18 22 22 C 1.38108 * 120.07354 * 359.97438 * 21 20 19 23 23 H 1.09001 * 109.47215 * 59.99942 * 1 2 3 24 24 H 1.09001 * 109.47048 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47362 * 299.99912 * 1 2 3 26 26 H 1.08993 * 109.46856 * 239.99957 * 2 1 3 27 27 H 1.09001 * 109.46973 * 119.99563 * 2 1 3 28 28 H 1.09001 * 109.47099 * 179.97438 * 5 3 2 29 29 H 1.09004 * 109.46908 * 299.99702 * 5 3 2 30 30 H 1.09000 * 109.47443 * 59.99545 * 5 3 2 31 31 H 1.09002 * 109.47398 * 295.00168 * 6 3 2 32 32 H 1.09001 * 109.47194 * 55.00349 * 6 3 2 33 33 H 1.08998 * 109.46888 * 209.99779 * 8 7 6 34 34 H 1.08994 * 109.47490 * 329.99842 * 8 7 6 35 35 H 0.96994 * 120.00272 * 179.97438 * 12 11 9 36 36 H 1.08004 * 120.03453 * 359.97438 * 18 17 7 37 37 H 1.08008 * 119.96053 * 180.24920 * 19 18 17 38 38 H 1.07998 * 119.92344 * 179.71797 * 20 19 18 39 39 H 1.07997 * 119.96277 * 179.97438 * 21 20 19 40 40 H 1.07999 * 120.03543 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 1.6352 2.1266 1.3074 6 6 3.5648 1.4443 -0.1257 7 7 4.0432 2.8238 -0.2458 8 6 4.3864 3.5873 0.9565 9 6 5.8419 3.3780 1.2861 10 1 6.4504 2.7397 0.6626 11 6 6.3969 4.0013 2.3836 12 7 7.6670 3.8182 2.6715 13 14 5.3447 5.1059 3.4616 14 1 4.7267 4.2982 4.5437 15 1 6.1932 6.1678 4.0596 16 1 4.2776 5.7298 2.6386 17 6 4.1721 3.4110 -1.5065 18 6 3.8526 2.6866 -2.6478 19 6 3.9767 3.2719 -3.8926 20 6 4.4284 4.5741 -4.0041 21 6 4.7524 5.2964 -2.8703 22 6 4.6252 4.7191 -1.6221 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.9989 3.1541 1.3076 29 1 0.5489 2.1253 1.3970 30 1 2.0698 1.5875 2.1492 31 1 4.0029 0.9836 0.7597 32 1 3.8570 0.8801 -1.0113 33 1 4.2029 4.6469 0.7787 34 1 3.7725 3.2473 1.7905 35 1 8.0575 4.2570 3.4434 36 1 3.5043 1.6679 -2.5617 37 1 3.7246 2.7105 -4.7802 38 1 4.5288 5.0278 -4.9790 39 1 5.1053 6.3130 -2.9609 40 1 4.8788 5.2836 -0.7370 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050424515.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:32 Heat of formation + Delta-G solvation = 1.048134 kcal Electronic energy + Delta-G solvation = -18330.492625 eV Core-core repulsion = 15722.972639 eV Total energy + Delta-G solvation = -2607.519986 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.51945 -38.28171 -36.13328 -34.59421 -31.95437 -31.21624 -30.61282 -29.06530 -27.13155 -24.57662 -24.06678 -22.74010 -21.32889 -20.75506 -19.08804 -18.34687 -16.87476 -16.51718 -16.13178 -15.82894 -15.59123 -15.13559 -14.81449 -14.46181 -14.31500 -14.13472 -13.86147 -13.48138 -13.35757 -13.11734 -12.89463 -12.66370 -12.44057 -12.22107 -12.10476 -12.07705 -11.80495 -11.75043 -11.50660 -11.42304 -11.26373 -10.81469 -10.42965 -9.67362 -8.34179 -7.92200 -6.38378 0.69407 0.91682 1.30699 1.32874 1.42996 2.28742 2.51210 2.99924 3.16845 3.90359 3.97953 4.06603 4.20342 4.26432 4.38793 4.48028 4.60029 4.62073 4.73524 4.75121 4.77861 4.83719 4.87946 4.89340 5.01211 5.06295 5.12429 5.17950 5.23834 5.27536 5.31541 5.47858 5.51772 5.56577 5.62962 5.75933 5.87954 6.10788 6.24695 6.61654 6.72266 6.90871 7.26967 8.83492 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.013653 B = 0.009486 C = 0.006262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2050.371324 B = 2951.065918 C = 4470.182623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.113 4.113 3 C -0.098 4.098 4 H 0.067 0.933 5 C -0.148 4.148 6 C 0.128 3.872 7 N -0.615 5.615 8 C 0.234 3.766 9 C -0.535 4.535 10 H 0.024 0.976 11 C 0.013 3.987 12 N -0.946 5.946 13 Si 0.941 3.059 14 H -0.260 1.260 15 H -0.281 1.281 16 H -0.248 1.248 17 C 0.213 3.787 18 C -0.218 4.218 19 C -0.074 4.074 20 C -0.197 4.197 21 C -0.082 4.082 22 C -0.223 4.223 23 H 0.054 0.946 24 H 0.064 0.936 25 H 0.054 0.946 26 H 0.069 0.931 27 H 0.061 0.939 28 H 0.038 0.962 29 H 0.070 0.930 30 H 0.048 0.952 31 H 0.056 0.944 32 H 0.075 0.925 33 H 0.024 0.976 34 H 0.040 0.960 35 H 0.267 0.733 36 H 0.130 0.870 37 H 0.146 0.854 38 H 0.140 0.860 39 H 0.129 0.871 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.560 -3.464 -8.536 17.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.152 4.152 3 C -0.118 4.118 4 H 0.086 0.914 5 C -0.205 4.205 6 C 0.005 3.995 7 N -0.321 5.321 8 C 0.111 3.889 9 C -0.574 4.574 10 H 0.043 0.957 11 C -0.185 4.185 12 N -0.586 5.586 13 Si 0.763 3.237 14 H -0.185 1.185 15 H -0.206 1.206 16 H -0.171 1.171 17 C 0.108 3.892 18 C -0.241 4.241 19 C -0.092 4.092 20 C -0.217 4.217 21 C -0.101 4.101 22 C -0.246 4.246 23 H 0.073 0.927 24 H 0.083 0.917 25 H 0.073 0.927 26 H 0.088 0.912 27 H 0.080 0.920 28 H 0.058 0.942 29 H 0.089 0.911 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.093 0.907 33 H 0.042 0.958 34 H 0.058 0.942 35 H 0.076 0.924 36 H 0.148 0.852 37 H 0.164 0.836 38 H 0.158 0.842 39 H 0.147 0.853 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -14.441 -3.516 -8.199 16.975 hybrid contribution 0.601 0.573 1.007 1.305 sum -13.841 -2.942 -7.192 15.873 Atomic orbital electron populations 1.21769 0.94716 1.02076 1.01908 1.21488 0.96817 0.94514 1.02335 1.21531 0.94474 0.97399 0.98368 0.91439 1.21939 1.01497 0.99987 0.97071 1.21504 0.94091 0.82255 1.01625 1.46664 1.69015 1.13418 1.03001 1.19379 0.93281 0.91908 0.84311 1.21720 0.95798 1.28889 1.10960 0.95747 1.25824 0.96073 0.97793 0.98773 1.70062 1.14107 1.45462 1.29005 0.85814 0.79301 0.79072 0.79485 1.18482 1.20637 1.17121 1.18195 0.92842 0.92179 0.85950 1.20840 1.10975 1.00776 0.91489 1.21162 0.96313 0.95052 0.96710 1.21097 1.06426 0.95767 0.98444 1.21092 0.97266 0.99944 0.91749 1.20866 1.09475 0.95723 0.98517 0.92695 0.91721 0.92657 0.91229 0.92023 0.94246 0.91116 0.93258 0.92531 0.90713 0.95785 0.94248 0.92371 0.85245 0.83584 0.84231 0.85282 0.88309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 9.67 71.98 0.70 -1.93 16 2 C -0.11 -2.42 5.40 30.60 0.17 -2.25 16 3 C -0.10 -2.67 2.59 -10.79 -0.03 -2.70 16 4 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 5 C -0.15 -4.23 7.94 71.98 0.57 -3.66 16 6 C 0.13 4.41 4.66 86.38 0.40 4.81 16 7 N -0.61 -25.60 2.41 -701.64 -1.69 -27.29 16 8 C 0.23 11.12 3.05 85.63 0.26 11.38 16 9 C -0.53 -31.05 9.94 25.60 0.25 -30.79 16 10 H 0.02 1.62 8.06 -2.91 -0.02 1.59 16 11 C 0.01 0.77 5.47 84.65 0.46 1.24 16 12 N -0.95 -59.44 13.96 21.45 0.30 -59.14 16 13 Si 0.94 43.44 27.47 68.60 1.88 45.32 16 14 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 15 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 16 H -0.25 -10.67 6.54 99.48 0.65 -10.02 16 17 C 0.21 8.54 6.55 38.22 0.25 8.79 16 18 C -0.22 -7.22 9.21 22.40 0.21 -7.02 16 19 C -0.07 -2.09 10.04 22.25 0.22 -1.87 16 20 C -0.20 -5.69 10.04 22.29 0.22 -5.46 16 21 C -0.08 -2.77 10.04 22.25 0.22 -2.55 16 22 C -0.22 -9.20 9.21 22.40 0.21 -9.00 16 23 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 24 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.05 0.99 6.57 -2.39 -0.02 0.98 16 26 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.04 1.30 5.89 -2.39 -0.01 1.29 16 29 H 0.07 1.68 6.57 -2.38 -0.02 1.66 16 30 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.06 2.12 8.07 -2.39 -0.02 2.10 16 32 H 0.07 2.35 6.19 -2.39 -0.01 2.34 16 33 H 0.02 1.17 5.25 -2.39 -0.01 1.16 16 34 H 0.04 1.80 5.41 -2.39 -0.01 1.78 16 35 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 36 H 0.13 3.77 6.14 -2.91 -0.02 3.76 16 37 H 0.15 3.04 8.06 -2.91 -0.02 3.01 16 38 H 0.14 3.09 8.06 -2.91 -0.02 3.07 16 39 H 0.13 3.75 8.06 -2.91 -0.02 3.73 16 40 H 0.10 4.52 6.14 -2.91 -0.02 4.50 16 Total: -1.00 -66.79 314.01 5.55 -61.23 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: 0.94 Total: 20.88 kcal Atomic # 6 Polarization: -45.13 SS G_CDS: 4.12 Total: -41.01 kcal Atomic # 7 Polarization: -85.04 SS G_CDS: -1.39 Total: -86.43 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 1.88 Total: 45.32 kcal Total: -66.79 5.55 -61.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050424515.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.283 kcal (2) G-P(sol) polarization free energy of solvation -66.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds