Wall clock time and date at job start Mon Mar 30 2020 06:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 H 1.08993 * 109.47194 * 54.99781 * 3 2 1 5 5 C 1.53006 * 109.47127 * 294.99938 * 3 2 1 6 6 C 1.52999 * 109.46991 * 175.00623 * 3 2 1 7 7 N 1.46501 * 109.47174 * 185.00246 * 6 3 2 8 8 C 1.46501 * 120.00244 * 89.99240 * 7 6 3 9 9 C 1.50698 * 109.46783 * 90.00448 * 8 7 6 10 10 H 1.08002 * 120.00559 * 359.97438 * 9 8 7 11 11 C 1.37880 * 120.00015 * 179.97438 * 9 8 7 12 12 N 1.31512 * 119.99579 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 120.00362 * 179.97438 * 11 9 8 14 14 H 1.48495 * 109.46865 * 90.00284 * 13 11 9 15 15 H 1.48492 * 109.47259 * 210.00375 * 13 11 9 16 16 H 1.48501 * 109.46909 * 330.00418 * 13 11 9 17 17 C 1.39682 * 119.99434 * 269.99540 * 7 6 3 18 18 C 1.38909 * 120.07659 * 359.72268 * 17 7 6 19 19 C 1.38103 * 119.92412 * 179.76811 * 18 17 7 20 20 C 1.38290 * 120.07384 * 0.50859 * 19 18 17 21 21 C 1.38290 * 120.14936 * 359.74154 * 20 19 18 22 22 C 1.38104 * 120.07474 * 0.02562 * 21 20 19 23 23 H 1.08998 * 109.46849 * 299.99880 * 1 2 3 24 24 H 1.09000 * 109.47227 * 59.99725 * 1 2 3 25 25 H 1.09004 * 109.47014 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.46717 * 239.99823 * 2 1 3 27 27 H 1.09000 * 109.47227 * 120.00275 * 2 1 3 28 28 H 1.09000 * 109.47050 * 180.02562 * 5 3 2 29 29 H 1.09001 * 109.46801 * 300.00272 * 5 3 2 30 30 H 1.09001 * 109.46998 * 59.99868 * 5 3 2 31 31 H 1.09007 * 109.46705 * 304.99506 * 6 3 2 32 32 H 1.08993 * 109.47768 * 64.99697 * 6 3 2 33 33 H 1.09005 * 109.46917 * 210.00123 * 8 7 6 34 34 H 1.08992 * 109.47418 * 330.00411 * 8 7 6 35 35 H 0.97007 * 120.00079 * 179.97438 * 12 11 9 36 36 H 1.07998 * 120.03786 * 0.02562 * 18 17 7 37 37 H 1.07999 * 119.96423 * 180.25096 * 19 18 17 38 38 H 1.07999 * 119.92767 * 179.72064 * 20 19 18 39 39 H 1.08000 * 119.95978 * 179.97438 * 21 20 19 40 40 H 1.07999 * 120.03606 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8417 5 6 1.6352 2.1265 -1.3074 6 6 3.5648 1.4443 0.1256 7 7 4.0433 2.8237 0.2457 8 6 4.1785 3.4397 1.5681 9 6 5.5628 3.1797 2.1040 10 1 6.2708 2.6120 1.5185 11 6 5.9254 3.6664 3.3420 12 7 5.0630 4.3572 4.0552 13 14 7.6410 3.3436 4.0068 14 1 8.5495 4.4400 3.5853 15 1 7.5939 3.2823 5.4897 16 1 8.1434 2.0518 3.4737 17 6 4.3705 3.5517 -0.9007 18 6 4.2482 2.9673 -2.1549 19 6 4.5680 3.6915 -3.2865 20 6 5.0195 4.9935 -3.1714 21 6 5.1473 5.5766 -1.9239 22 6 4.8247 4.8597 -0.7885 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 1.9989 3.1541 -1.3076 29 1 2.0698 1.5874 -2.1492 30 1 0.5489 2.1252 -1.3970 31 1 3.8570 0.8800 1.0112 32 1 4.0029 0.9836 -0.7597 33 1 4.0164 4.5145 1.4865 34 1 3.4401 3.0112 2.2457 35 1 5.3180 4.6994 4.9264 36 1 3.8996 1.9492 -2.2452 37 1 4.4694 3.2391 -4.2622 38 1 5.2732 5.5562 -4.0576 39 1 5.5006 6.5936 -1.8376 40 1 4.9251 5.3155 0.1854 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050424517.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:35 Heat of formation + Delta-G solvation = 12.792874 kcal Electronic energy + Delta-G solvation = -18330.653971 eV Core-core repulsion = 15723.643276 eV Total energy + Delta-G solvation = -2607.010695 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.14028 -36.81474 -34.69158 -32.62585 -30.58672 -29.55308 -28.99104 -27.22065 -25.38908 -23.53612 -22.59161 -21.36192 -20.04695 -19.24328 -16.93747 -16.43816 -15.12986 -15.04521 -14.67817 -14.56751 -14.16087 -13.78198 -13.18709 -13.00726 -12.86512 -12.53519 -12.30202 -12.10198 -11.71559 -11.59000 -11.25227 -11.05834 -10.96738 -10.76978 -10.72519 -10.57232 -10.39743 -10.25669 -10.20935 -9.77855 -9.66344 -8.84241 -8.49351 -8.21524 -6.44687 -6.00076 -4.16019 2.14120 2.36081 3.26993 3.33511 3.37124 4.11795 4.41254 4.62161 5.09051 5.14652 5.22694 5.23589 5.45811 5.54048 5.60419 5.75425 5.76340 5.82586 5.91751 5.98837 6.09675 6.14067 6.17638 6.25379 6.31338 6.36428 6.40406 6.49075 6.66096 6.69413 6.72188 7.02068 7.12581 7.22326 7.29967 7.39718 7.65356 7.82512 8.17916 8.31721 8.54187 8.93533 9.50785 10.96603 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.014749 B = 0.008428 C = 0.005859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.024065 B = 3321.322306 C = 4778.041177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.117 4.117 3 C -0.111 4.111 4 H 0.072 0.928 5 C -0.144 4.144 6 C 0.131 3.869 7 N -0.608 5.608 8 C 0.251 3.749 9 C -0.530 4.530 10 H 0.059 0.941 11 C 0.062 3.938 12 N -0.895 5.895 13 Si 0.895 3.105 14 H -0.279 1.279 15 H -0.286 1.286 16 H -0.274 1.274 17 C 0.241 3.759 18 C -0.218 4.218 19 C -0.082 4.082 20 C -0.206 4.206 21 C -0.078 4.078 22 C -0.190 4.190 23 H 0.052 0.948 24 H 0.054 0.946 25 H 0.048 0.952 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.050 0.950 30 H 0.045 0.955 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.034 0.966 34 H 0.029 0.971 35 H 0.263 0.737 36 H 0.116 0.884 37 H 0.106 0.894 38 H 0.104 0.896 39 H 0.109 0.891 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.680 -4.501 -10.150 12.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.155 4.155 3 C -0.131 4.131 4 H 0.090 0.910 5 C -0.201 4.201 6 C 0.006 3.994 7 N -0.313 5.313 8 C 0.131 3.869 9 C -0.569 4.569 10 H 0.077 0.923 11 C -0.141 4.141 12 N -0.534 5.534 13 Si 0.723 3.277 14 H -0.205 1.205 15 H -0.212 1.212 16 H -0.199 1.199 17 C 0.134 3.866 18 C -0.241 4.241 19 C -0.101 4.101 20 C -0.226 4.226 21 C -0.097 4.097 22 C -0.213 4.213 23 H 0.072 0.928 24 H 0.073 0.927 25 H 0.067 0.933 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.092 0.908 32 H 0.079 0.921 33 H 0.052 0.948 34 H 0.047 0.953 35 H 0.073 0.927 36 H 0.134 0.866 37 H 0.124 0.876 38 H 0.122 0.878 39 H 0.127 0.873 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -5.751 -4.525 -9.743 12.185 hybrid contribution 1.000 -0.118 0.548 1.146 sum -4.752 -4.643 -9.195 11.344 Atomic orbital electron populations 1.21796 0.96200 1.00955 1.01859 1.21508 0.95655 0.96637 1.01698 1.21675 0.97001 0.95567 0.98883 0.90997 1.22022 1.00009 1.01493 0.96573 1.21321 0.92095 0.84279 1.01663 1.47119 1.67332 1.11713 1.05097 1.19236 0.96500 0.93877 0.77244 1.21597 0.98589 1.34559 1.02179 0.92291 1.24955 0.97431 0.94998 0.96669 1.69932 1.34727 1.36188 1.12564 0.86539 0.84485 0.78776 0.77916 1.20533 1.21179 1.19923 1.17903 0.91019 0.90910 0.86742 1.20707 1.11301 1.00617 0.91427 1.20664 0.98004 0.94352 0.97033 1.20638 1.08887 0.96360 0.96752 1.20805 0.97884 0.98707 0.92317 1.20911 1.06743 0.94199 0.99404 0.92843 0.92659 0.93279 0.92304 0.92011 0.91809 0.93051 0.93614 0.90818 0.92057 0.94799 0.95279 0.92700 0.86595 0.87582 0.87807 0.87263 0.85208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.67 37.16 0.36 -1.31 16 2 C -0.12 -1.45 5.40 -26.73 -0.14 -1.59 16 3 C -0.11 -1.67 2.59 -90.62 -0.24 -1.91 16 4 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 5 C -0.14 -2.06 7.40 37.16 0.27 -1.78 16 6 C 0.13 2.29 4.95 -4.04 -0.02 2.27 16 7 N -0.61 -12.68 2.45 -173.12 -0.42 -13.11 16 8 C 0.25 6.23 4.91 -5.19 -0.03 6.20 16 9 C -0.53 -14.43 9.39 -34.44 -0.32 -14.76 16 10 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 11 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 12 N -0.90 -25.64 13.29 55.43 0.74 -24.90 16 13 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 14 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 15 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 16 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 17 C 0.24 4.83 5.37 -83.78 -0.45 4.38 16 18 C -0.22 -3.78 7.16 -39.38 -0.28 -4.06 16 19 C -0.08 -1.30 10.04 -39.61 -0.40 -1.70 16 20 C -0.21 -3.33 10.04 -39.54 -0.40 -3.73 16 21 C -0.08 -1.39 10.04 -39.61 -0.40 -1.78 16 22 C -0.19 -3.90 9.21 -39.38 -0.36 -4.27 16 23 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.05 0.59 6.56 -51.93 -0.34 0.25 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.06 1.06 5.86 -51.93 -0.30 0.76 16 29 H 0.05 0.68 6.67 -51.93 -0.35 0.33 16 30 H 0.04 0.59 6.56 -51.93 -0.34 0.25 16 31 H 0.07 1.36 8.07 -51.93 -0.42 0.94 16 32 H 0.06 0.99 6.19 -51.93 -0.32 0.67 16 33 H 0.03 0.90 6.20 -51.93 -0.32 0.58 16 34 H 0.03 0.76 8.07 -51.93 -0.42 0.34 16 35 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 36 H 0.12 1.84 4.42 -52.49 -0.23 1.61 16 37 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 38 H 0.10 1.43 8.06 -52.49 -0.42 1.00 16 39 H 0.11 1.70 8.06 -52.49 -0.42 1.27 16 40 H 0.13 2.93 6.14 -52.49 -0.32 2.61 16 LS Contribution 313.99 15.07 4.73 4.73 Total: -1.00 -27.99 313.99 -8.77 -36.76 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -6.30 Total: 2.59 kcal Atomic # 6 Polarization: -19.93 SS G_CDS: -2.50 Total: -22.43 kcal Atomic # 7 Polarization: -38.32 SS G_CDS: 0.31 Total: -38.01 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -27.99 -8.77 -36.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050424517.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.550 kcal (2) G-P(sol) polarization free energy of solvation -27.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds