Wall clock time and date at job start Mon Mar 30 2020 06:28:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 H 1.08993 * 109.47194 * 54.99781 * 3 2 1 5 5 C 1.53006 * 109.47127 * 294.99938 * 3 2 1 6 6 C 1.52999 * 109.46991 * 175.00623 * 3 2 1 7 7 N 1.46501 * 109.47174 * 185.00246 * 6 3 2 8 8 C 1.46501 * 120.00244 * 89.99240 * 7 6 3 9 9 C 1.50698 * 109.46783 * 90.00448 * 8 7 6 10 10 H 1.08002 * 120.00559 * 359.97438 * 9 8 7 11 11 C 1.37880 * 120.00015 * 179.97438 * 9 8 7 12 12 N 1.31512 * 119.99579 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 120.00362 * 179.97438 * 11 9 8 14 14 H 1.48495 * 109.46865 * 90.00284 * 13 11 9 15 15 H 1.48492 * 109.47259 * 210.00375 * 13 11 9 16 16 H 1.48501 * 109.46909 * 330.00418 * 13 11 9 17 17 C 1.39682 * 119.99434 * 269.99540 * 7 6 3 18 18 C 1.38909 * 120.07659 * 359.72268 * 17 7 6 19 19 C 1.38103 * 119.92412 * 179.76811 * 18 17 7 20 20 C 1.38290 * 120.07384 * 0.50859 * 19 18 17 21 21 C 1.38290 * 120.14936 * 359.74154 * 20 19 18 22 22 C 1.38104 * 120.07474 * 0.02562 * 21 20 19 23 23 H 1.08998 * 109.46849 * 299.99880 * 1 2 3 24 24 H 1.09000 * 109.47227 * 59.99725 * 1 2 3 25 25 H 1.09004 * 109.47014 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.46717 * 239.99823 * 2 1 3 27 27 H 1.09000 * 109.47227 * 120.00275 * 2 1 3 28 28 H 1.09000 * 109.47050 * 180.02562 * 5 3 2 29 29 H 1.09001 * 109.46801 * 300.00272 * 5 3 2 30 30 H 1.09001 * 109.46998 * 59.99868 * 5 3 2 31 31 H 1.09007 * 109.46705 * 304.99506 * 6 3 2 32 32 H 1.08993 * 109.47768 * 64.99697 * 6 3 2 33 33 H 1.09005 * 109.46917 * 210.00123 * 8 7 6 34 34 H 1.08992 * 109.47418 * 330.00411 * 8 7 6 35 35 H 0.97007 * 120.00079 * 179.97438 * 12 11 9 36 36 H 1.07998 * 120.03786 * 0.02562 * 18 17 7 37 37 H 1.07999 * 119.96423 * 180.25096 * 19 18 17 38 38 H 1.07999 * 119.92767 * 179.72064 * 20 19 18 39 39 H 1.08000 * 119.95978 * 179.97438 * 21 20 19 40 40 H 1.07999 * 120.03606 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8417 5 6 1.6352 2.1265 -1.3074 6 6 3.5648 1.4443 0.1256 7 7 4.0433 2.8237 0.2457 8 6 4.1785 3.4397 1.5681 9 6 5.5628 3.1797 2.1040 10 1 6.2708 2.6120 1.5185 11 6 5.9254 3.6664 3.3420 12 7 5.0630 4.3572 4.0552 13 14 7.6410 3.3436 4.0068 14 1 8.5495 4.4400 3.5853 15 1 7.5939 3.2823 5.4897 16 1 8.1434 2.0518 3.4737 17 6 4.3705 3.5517 -0.9007 18 6 4.2482 2.9673 -2.1549 19 6 4.5680 3.6915 -3.2865 20 6 5.0195 4.9935 -3.1714 21 6 5.1473 5.5766 -1.9239 22 6 4.8247 4.8597 -0.7885 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 1.9989 3.1541 -1.3076 29 1 2.0698 1.5874 -2.1492 30 1 0.5489 2.1252 -1.3970 31 1 3.8570 0.8800 1.0112 32 1 4.0029 0.9836 -0.7597 33 1 4.0164 4.5145 1.4865 34 1 3.4401 3.0112 2.2457 35 1 5.3180 4.6994 4.9264 36 1 3.8996 1.9492 -2.2452 37 1 4.4694 3.2391 -4.2622 38 1 5.2732 5.5562 -4.0576 39 1 5.5006 6.5936 -1.8376 40 1 4.9251 5.3155 0.1854 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050424517.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:34 Heat of formation + Delta-G solvation = -0.260849 kcal Electronic energy + Delta-G solvation = -18331.220023 eV Core-core repulsion = 15723.643276 eV Total energy + Delta-G solvation = -2607.576747 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.58746 -38.11202 -36.21139 -34.58496 -31.97561 -30.84468 -30.48585 -28.85766 -26.86988 -25.11369 -24.06025 -22.75179 -21.42126 -20.59236 -18.59023 -18.38568 -16.87814 -16.39190 -16.05653 -15.92979 -15.70670 -15.04884 -14.59910 -14.57116 -14.32576 -13.91948 -13.77831 -13.48676 -13.15737 -12.87982 -12.78973 -12.73554 -12.55440 -12.30983 -12.18722 -11.99694 -11.97164 -11.63822 -11.52293 -11.38442 -11.16720 -10.64581 -10.42843 -9.61307 -8.36339 -7.77980 -6.37550 0.73537 0.95920 1.35734 1.36607 1.47296 2.33340 2.61812 3.05867 3.20970 3.89421 4.01183 4.10205 4.22463 4.30167 4.39679 4.49016 4.62386 4.65899 4.75760 4.81644 4.83994 4.87684 4.91985 5.02463 5.12911 5.15164 5.16654 5.19625 5.25050 5.32537 5.35862 5.53353 5.57318 5.62596 5.72829 5.80321 5.92175 6.08251 6.26332 6.53499 6.85102 6.99662 7.34600 8.83007 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.014749 B = 0.008428 C = 0.005859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.024065 B = 3321.322306 C = 4778.041177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.112 4.112 3 C -0.104 4.104 4 H 0.042 0.958 5 C -0.135 4.135 6 C 0.130 3.870 7 N -0.619 5.619 8 C 0.272 3.728 9 C -0.541 4.541 10 H 0.049 0.951 11 C 0.012 3.988 12 N -0.927 5.927 13 Si 0.961 3.039 14 H -0.275 1.275 15 H -0.277 1.277 16 H -0.269 1.269 17 C 0.217 3.783 18 C -0.212 4.212 19 C -0.076 4.076 20 C -0.198 4.198 21 C -0.083 4.083 22 C -0.225 4.225 23 H 0.042 0.958 24 H 0.061 0.939 25 H 0.066 0.934 26 H 0.077 0.923 27 H 0.056 0.944 28 H 0.036 0.964 29 H 0.069 0.931 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.081 0.919 33 H 0.007 0.993 34 H 0.005 0.995 35 H 0.267 0.733 36 H 0.134 0.866 37 H 0.147 0.853 38 H 0.139 0.861 39 H 0.125 0.875 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.333 -5.761 -12.845 15.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.150 4.150 3 C -0.124 4.124 4 H 0.061 0.939 5 C -0.192 4.192 6 C 0.007 3.993 7 N -0.325 5.325 8 C 0.151 3.849 9 C -0.580 4.580 10 H 0.067 0.933 11 C -0.187 4.187 12 N -0.567 5.567 13 Si 0.786 3.214 14 H -0.201 1.201 15 H -0.203 1.203 16 H -0.194 1.194 17 C 0.113 3.887 18 C -0.234 4.234 19 C -0.094 4.094 20 C -0.218 4.218 21 C -0.102 4.102 22 C -0.248 4.248 23 H 0.061 0.939 24 H 0.080 0.920 25 H 0.085 0.915 26 H 0.096 0.904 27 H 0.075 0.925 28 H 0.055 0.945 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.099 0.901 33 H 0.025 0.975 34 H 0.023 0.977 35 H 0.076 0.924 36 H 0.152 0.848 37 H 0.165 0.835 38 H 0.156 0.844 39 H 0.143 0.857 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.410 -5.791 -12.473 14.777 hybrid contribution 0.877 0.326 1.285 1.590 sum -4.533 -5.465 -11.187 13.250 Atomic orbital electron populations 1.21777 0.94958 1.02104 1.01710 1.21478 0.96677 0.94441 1.02393 1.21571 0.94994 0.97387 0.98441 0.93948 1.21929 1.01027 0.99861 0.96397 1.21468 0.93878 0.82419 1.01562 1.46936 1.68780 1.12933 1.03896 1.18660 0.94786 0.92318 0.79177 1.21804 0.99372 1.34366 1.02437 0.93294 1.25780 1.01324 0.94660 0.96921 1.70043 1.36652 1.37000 1.12961 0.85515 0.79676 0.78739 0.77517 1.20066 1.20261 1.19353 1.18156 0.92171 0.90943 0.87480 1.20925 1.10512 1.01476 0.90511 1.21150 0.96007 0.94087 0.98160 1.21062 1.07048 0.96729 0.96931 1.21042 0.97469 0.99412 0.92261 1.20834 1.09682 0.95366 0.98910 0.93885 0.91955 0.91473 0.90431 0.92494 0.94493 0.91242 0.92082 0.92693 0.90127 0.97546 0.97735 0.92449 0.84816 0.83540 0.84358 0.85688 0.89026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.00 9.67 71.98 0.70 -2.31 16 2 C -0.11 -2.60 5.40 30.59 0.17 -2.44 16 3 C -0.10 -3.13 2.59 -10.79 -0.03 -3.15 16 4 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 5 C -0.14 -3.67 7.40 71.98 0.53 -3.14 16 6 C 0.13 4.63 4.95 86.38 0.43 5.06 16 7 N -0.62 -27.06 2.45 -701.63 -1.72 -28.78 16 8 C 0.27 14.53 4.91 85.63 0.42 14.95 16 9 C -0.54 -30.88 9.39 25.60 0.24 -30.64 16 10 H 0.05 2.83 7.81 -2.91 -0.02 2.81 16 11 C 0.01 0.70 5.46 84.66 0.46 1.16 16 12 N -0.93 -55.19 13.29 21.45 0.28 -54.91 16 13 Si 0.96 44.70 29.54 68.60 2.03 46.73 16 14 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 15 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 16 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 17 C 0.22 8.88 5.37 38.21 0.21 9.08 16 18 C -0.21 -6.92 7.16 22.40 0.16 -6.76 16 19 C -0.08 -2.12 10.04 22.25 0.22 -1.89 16 20 C -0.20 -5.74 10.04 22.29 0.22 -5.52 16 21 C -0.08 -2.90 10.04 22.25 0.22 -2.67 16 22 C -0.23 -9.65 9.21 22.40 0.21 -9.45 16 23 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 24 H 0.06 1.17 6.56 -2.39 -0.02 1.16 16 25 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 27 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.04 1.21 5.86 -2.39 -0.01 1.19 16 29 H 0.07 1.62 6.67 -2.39 -0.02 1.60 16 30 H 0.06 1.46 6.56 -2.39 -0.02 1.44 16 31 H 0.05 2.12 8.07 -2.38 -0.02 2.10 16 32 H 0.08 2.52 6.19 -2.39 -0.01 2.50 16 33 H 0.01 0.38 6.20 -2.38 -0.01 0.37 16 34 H 0.00 0.26 8.07 -2.39 -0.02 0.24 16 35 H 0.27 14.93 8.31 -92.70 -0.77 14.16 16 36 H 0.13 3.82 4.42 -2.91 -0.01 3.81 16 37 H 0.15 2.98 8.06 -2.91 -0.02 2.96 16 38 H 0.14 3.10 8.06 -2.91 -0.02 3.08 16 39 H 0.13 3.81 8.06 -2.91 -0.02 3.79 16 40 H 0.09 4.55 6.14 -2.91 -0.02 4.53 16 Total: -1.00 -63.34 313.99 5.75 -57.59 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: 1.00 Total: 17.08 kcal Atomic # 6 Polarization: -41.87 SS G_CDS: 4.16 Total: -37.71 kcal Atomic # 7 Polarization: -82.25 SS G_CDS: -1.44 Total: -83.69 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -63.34 5.75 -57.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050424517.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.330 kcal (2) G-P(sol) polarization free energy of solvation -63.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds