Wall clock time and date at job start Mon Mar 30 2020 05:38:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50697 * 109.47280 * 2 1 4 4 C 1.38102 * 120.03851 * 264.99843 * 3 2 1 5 5 C 1.38285 * 120.06944 * 180.29529 * 4 3 2 6 6 C 1.38281 * 120.15273 * 359.45335 * 5 4 3 7 7 C 1.38106 * 120.07655 * 0.54982 * 6 5 4 8 8 C 1.50697 * 120.03879 * 179.74681 * 7 6 5 9 9 C 1.52996 * 109.47399 * 268.07455 * 8 7 6 10 10 C 1.38910 * 119.92289 * 359.72382 * 7 6 5 11 11 N 1.39672 * 120.07716 * 179.97438 * 10 7 6 12 12 C 1.46907 * 110.99703 * 260.10469 * 11 10 7 13 13 C 1.52998 * 109.46722 * 184.75086 * 12 11 10 14 14 C 1.50710 * 109.46844 * 179.97438 * 13 12 11 15 15 H 1.08001 * 119.99284 * 0.02562 * 14 13 12 16 16 C 1.37871 * 119.99733 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00297 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99562 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.46993 * 90.00447 * 18 16 14 20 20 H 1.48506 * 109.46890 * 210.00148 * 18 16 14 21 21 H 1.48493 * 109.47364 * 329.99996 * 18 16 14 22 22 H 1.09004 * 109.46912 * 299.99917 * 1 2 3 23 23 H 1.08995 * 109.47199 * 59.99669 * 1 2 3 24 24 H 1.09001 * 109.47546 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46912 * 240.00083 * 2 1 3 26 26 H 1.09001 * 109.46843 * 120.00592 * 2 1 3 27 27 H 1.07990 * 119.96150 * 0.02928 * 4 3 2 28 28 H 1.08003 * 119.92047 * 179.70631 * 5 4 3 29 29 H 1.08009 * 119.96120 * 180.25443 * 6 5 4 30 30 H 1.09005 * 109.47257 * 28.07617 * 8 7 6 31 31 H 1.09001 * 109.47094 * 148.07224 * 8 7 6 32 32 H 1.09004 * 109.47156 * 53.76914 * 9 8 7 33 33 H 1.08994 * 109.47695 * 173.77447 * 9 8 7 34 34 H 1.09002 * 109.46814 * 293.77557 * 9 8 7 35 35 H 1.00896 * 111.00428 * 136.15341 * 11 10 7 36 36 H 1.09004 * 109.46835 * 304.74966 * 12 11 10 37 37 H 1.08998 * 109.47228 * 64.74762 * 12 11 10 38 38 H 1.08996 * 109.47254 * 299.99774 * 13 12 11 39 39 H 1.09004 * 109.47158 * 60.00126 * 13 12 11 40 40 H 0.97002 * 119.99930 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3611 2.0378 -1.1910 5 6 2.8279 3.3395 -1.1912 6 6 2.9566 4.0314 -0.0009 7 6 2.6297 3.4204 1.1937 8 6 2.7756 4.1734 2.4909 9 6 4.1630 3.9108 3.0798 10 6 2.1658 2.1111 1.1981 11 7 1.8348 1.4898 2.4045 12 6 2.9204 0.6105 2.8590 13 6 2.4760 -0.1404 4.1158 14 6 3.5894 -1.0430 4.5817 15 1 4.5208 -1.0771 4.0361 16 6 3.4191 -1.8242 5.7049 17 7 2.2851 -1.7822 6.3694 18 14 4.7995 -2.9424 6.2827 19 1 5.6701 -2.2038 7.2322 20 1 4.2226 -4.1305 6.9617 21 1 5.6028 -3.3818 5.1137 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 2.2575 1.5017 -2.1227 28 1 3.0888 3.8181 -2.1236 29 1 3.3176 5.0494 -0.0051 30 1 2.6552 5.2410 2.3068 31 1 2.0130 3.8377 3.1937 32 1 4.9240 4.1432 2.3348 33 1 4.3101 4.5396 3.9578 34 1 4.2435 2.8622 3.3664 35 1 0.9674 0.9809 2.3231 36 1 3.1605 -0.1060 2.0734 37 1 3.8021 1.2095 3.0863 38 1 2.2358 0.5760 4.9012 39 1 1.5942 -0.7395 3.8883 40 1 2.1652 -2.3321 7.1594 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051787583.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:38:26 Heat of formation + Delta-G solvation = -2.390692 kcal Electronic energy + Delta-G solvation = -18134.214883 eV Core-core repulsion = 15526.545779 eV Total energy + Delta-G solvation = -2607.669104 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.90549 -35.72287 -34.73442 -33.11794 -32.13092 -30.03814 -28.80629 -27.49508 -24.39486 -23.77258 -23.06367 -20.84690 -20.68914 -19.80284 -16.81842 -16.28041 -15.80441 -15.11338 -14.59247 -14.24163 -13.93626 -13.83608 -13.55194 -13.32797 -13.01163 -12.63326 -12.52021 -12.18872 -11.90324 -11.77375 -11.27784 -11.22268 -11.12676 -10.88253 -10.78511 -10.63225 -10.52696 -10.43566 -9.95689 -9.48172 -9.20085 -8.45600 -8.38091 -8.33995 -7.80310 -6.02110 -4.04882 1.55780 1.60963 3.31047 3.37348 3.40476 3.91276 4.42433 4.73644 4.90749 4.96507 5.09395 5.28344 5.34170 5.45808 5.47261 5.56480 5.60236 5.74069 5.77711 5.82440 5.98927 6.03694 6.07981 6.18565 6.25833 6.28793 6.30498 6.39564 6.59822 6.64647 6.69182 6.75862 6.90105 7.01087 7.10875 7.54741 7.66207 7.83885 8.01339 8.05206 8.39530 9.01870 9.59276 11.09163 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.023004 B = 0.005931 C = 0.005206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.863714 B = 4719.661412 C = 5377.201823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.097 4.097 3 C -0.116 4.116 4 C -0.117 4.117 5 C -0.133 4.133 6 C -0.121 4.121 7 C -0.065 4.065 8 C -0.075 4.075 9 C -0.148 4.148 10 C 0.113 3.887 11 N -0.651 5.651 12 C 0.068 3.932 13 C 0.025 3.975 14 C -0.521 4.521 15 H 0.054 0.946 16 C 0.060 3.940 17 N -0.893 5.893 18 Si 0.892 3.108 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.274 1.274 22 H 0.057 0.943 23 H 0.052 0.948 24 H 0.059 0.941 25 H 0.069 0.931 26 H 0.082 0.918 27 H 0.114 0.886 28 H 0.115 0.885 29 H 0.117 0.883 30 H 0.057 0.943 31 H 0.087 0.913 32 H 0.045 0.955 33 H 0.052 0.948 34 H 0.069 0.931 35 H 0.346 0.654 36 H 0.024 0.976 37 H 0.066 0.934 38 H 0.026 0.974 39 H 0.014 0.986 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.079 9.164 -13.206 16.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.134 4.134 3 C -0.119 4.119 4 C -0.136 4.136 5 C -0.151 4.151 6 C -0.140 4.140 7 C -0.067 4.067 8 C -0.112 4.112 9 C -0.205 4.205 10 C 0.016 3.984 11 N -0.280 5.280 12 C -0.057 4.057 13 C -0.013 4.013 14 C -0.560 4.560 15 H 0.072 0.928 16 C -0.142 4.142 17 N -0.532 5.532 18 Si 0.719 3.281 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.199 1.199 22 H 0.076 0.924 23 H 0.071 0.929 24 H 0.078 0.922 25 H 0.088 0.912 26 H 0.101 0.899 27 H 0.132 0.868 28 H 0.133 0.867 29 H 0.135 0.865 30 H 0.075 0.925 31 H 0.105 0.895 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.168 0.832 36 H 0.042 0.958 37 H 0.084 0.916 38 H 0.045 0.955 39 H 0.032 0.968 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.972 9.583 -12.615 15.872 hybrid contribution 0.643 -1.379 -0.347 1.561 sum -0.329 8.204 -12.963 15.344 Atomic orbital electron populations 1.21729 0.94762 1.01803 1.01889 1.20666 0.96248 0.92882 1.03587 1.20581 1.01108 0.96218 0.93952 1.20834 1.00568 0.95185 0.97008 1.20972 1.01475 0.94953 0.97682 1.20905 1.01328 0.99718 0.92003 1.19815 0.98604 0.93054 0.95188 1.20371 0.99003 0.97598 0.94246 1.21806 0.95703 1.03182 0.99824 1.18646 0.97839 0.93069 0.88814 1.58128 1.07120 1.36681 1.26083 1.22371 0.92324 0.92763 0.98241 1.19111 0.96543 0.94452 0.91171 1.21130 1.00367 1.23683 1.10832 0.92754 1.24977 0.95627 0.97048 0.96537 1.69967 1.24239 1.40408 1.18536 0.86602 0.82251 0.80311 0.78895 1.20599 1.21208 1.19920 0.92440 0.92874 0.92243 0.91247 0.89939 0.86819 0.86707 0.86482 0.92450 0.89488 0.93627 0.92843 0.91257 0.83213 0.95796 0.91621 0.95530 0.96763 0.92965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.79 37.16 0.36 -1.44 16 2 C -0.10 -1.36 5.38 -27.88 -0.15 -1.51 16 3 C -0.12 -1.75 5.05 -104.42 -0.53 -2.27 16 4 C -0.12 -1.57 9.68 -39.61 -0.38 -1.95 16 5 C -0.13 -1.67 10.04 -39.55 -0.40 -2.06 16 6 C -0.12 -1.61 9.69 -39.61 -0.38 -1.99 16 7 C -0.07 -1.00 5.15 -104.42 -0.54 -1.53 16 8 C -0.07 -1.08 5.80 -27.89 -0.16 -1.24 16 9 C -0.15 -2.16 9.90 37.16 0.37 -1.80 16 10 C 0.11 1.86 5.28 -83.78 -0.44 1.41 16 11 N -0.65 -11.73 5.20 -58.35 -0.30 -12.04 16 12 C 0.07 1.42 5.10 -3.82 -0.02 1.40 16 13 C 0.02 0.63 5.18 -27.88 -0.14 0.48 16 14 C -0.52 -14.60 9.11 -34.44 -0.31 -14.91 16 15 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 16 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 17 N -0.89 -26.58 13.29 55.43 0.74 -25.85 16 18 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 22 H 0.06 0.75 6.84 -51.93 -0.36 0.40 16 23 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.07 0.88 8.05 -51.93 -0.42 0.46 16 26 H 0.08 1.35 5.31 -51.93 -0.28 1.07 16 27 H 0.11 1.28 8.06 -52.49 -0.42 0.86 16 28 H 0.11 1.15 8.06 -52.48 -0.42 0.72 16 29 H 0.12 1.30 8.06 -52.48 -0.42 0.88 16 30 H 0.06 0.71 8.07 -51.93 -0.42 0.29 16 31 H 0.09 1.39 7.52 -51.93 -0.39 1.00 16 32 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.07 1.19 5.63 -51.93 -0.29 0.89 16 35 H 0.35 6.10 6.46 -39.29 -0.25 5.85 16 36 H 0.02 0.50 6.12 -51.93 -0.32 0.19 16 37 H 0.07 1.40 5.63 -51.93 -0.29 1.11 16 38 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 40 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 318.65 15.07 4.80 4.80 Total: -1.00 -29.26 318.65 -8.97 -38.23 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -6.36 Total: 4.12 kcal Atomic # 6 Polarization: -22.98 SS G_CDS: -2.83 Total: -25.81 kcal Atomic # 7 Polarization: -38.32 SS G_CDS: 0.43 Total: -37.88 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.26 -8.97 -38.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051787583.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.840 kcal (2) G-P(sol) polarization free energy of solvation -29.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds