Wall clock time and date at job start Mon Mar 30 2020 06:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47115 * 2 1 4 4 C 1.53000 * 109.47295 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47125 * 180.02562 * 4 3 2 6 6 C 1.46502 * 119.99878 * 269.99706 * 5 4 3 7 7 C 1.50702 * 109.47127 * 270.00175 * 6 5 4 8 8 H 1.08004 * 119.99967 * 0.02562 * 7 6 5 9 9 C 1.37877 * 119.99901 * 179.97438 * 7 6 5 10 10 N 1.31520 * 119.99871 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 120.00139 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.46805 * 60.00148 * 11 9 7 13 13 H 1.48492 * 109.47397 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.47109 * 300.00585 * 11 9 7 15 15 C 1.39666 * 120.00013 * 89.99928 * 5 4 3 16 16 C 1.38937 * 120.07615 * 0.23111 * 15 5 4 17 17 C 1.38081 * 119.92453 * 180.27825 * 16 15 5 18 18 C 1.38308 * 120.07401 * 359.48697 * 17 16 15 19 19 C 1.38269 * 120.15155 * 0.25953 * 18 17 16 20 20 C 1.50699 * 119.96415 * 180.02562 * 19 18 17 21 21 C 1.38121 * 120.07065 * 359.97438 * 19 18 17 22 22 H 1.08993 * 109.47336 * 60.00114 * 1 2 3 23 23 H 1.09007 * 109.46670 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.47108 * 299.99535 * 1 2 3 25 25 H 1.09005 * 109.47108 * 240.00465 * 2 1 3 26 26 H 1.08996 * 109.47642 * 120.00577 * 2 1 3 27 27 H 1.08999 * 109.47136 * 60.00010 * 3 2 1 28 28 H 1.09006 * 109.46956 * 300.00375 * 3 2 1 29 29 H 1.08999 * 109.47299 * 59.99768 * 4 3 2 30 30 H 1.09000 * 109.46576 * 300.00296 * 4 3 2 31 31 H 1.09000 * 109.47224 * 30.00006 * 6 5 4 32 32 H 1.08996 * 109.47050 * 149.99681 * 6 5 4 33 33 H 0.96998 * 119.99314 * 179.97438 * 10 9 7 34 34 H 1.07998 * 120.03482 * 0.02562 * 16 15 5 35 35 H 1.08002 * 119.96548 * 179.77227 * 17 16 15 36 36 H 1.08004 * 119.92377 * 180.23461 * 18 17 16 37 37 H 1.08998 * 109.47167 * 89.99479 * 20 19 18 38 38 H 1.09002 * 109.47050 * 210.00251 * 20 19 18 39 39 H 1.09008 * 109.47029 * 329.99670 * 20 19 18 40 40 H 1.08007 * 120.03411 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0583 2.8238 0.0000 6 6 4.3020 3.5151 -1.2685 7 6 5.7251 3.2786 -1.7042 8 1 6.3822 2.6734 -1.0972 9 6 6.1879 3.8338 -2.8783 10 7 5.3875 4.5704 -3.6177 11 14 7.9521 3.5413 -3.4181 12 1 8.1802 2.0847 -3.5958 13 1 8.1990 4.2419 -4.7038 14 1 8.8796 4.0649 -2.3834 15 6 4.2915 3.4815 1.2098 16 6 4.0656 2.8257 2.4137 17 6 4.2918 3.4808 3.6080 18 6 4.7528 4.7848 3.6067 19 6 4.9837 5.4386 2.4105 20 6 5.4866 6.8592 2.4140 21 6 4.7550 4.7908 1.2123 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0278 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 1.6767 1.9563 0.8900 28 1 1.6766 1.9564 -0.8900 29 1 3.9330 0.9288 -0.8908 30 1 3.9336 0.9285 0.8891 31 1 3.6209 3.1314 -2.0281 32 1 4.1349 4.5842 -1.1375 33 1 5.7133 4.9613 -4.4435 34 1 3.7096 1.8061 2.4153 35 1 4.1128 2.9729 4.5441 36 1 4.9325 5.2936 4.5423 37 1 6.5766 6.8588 2.4145 38 1 5.1238 7.3753 1.5251 39 1 5.1231 7.3711 3.3051 40 1 4.9351 5.3022 0.2782 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054965075.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:29 Heat of formation + Delta-G solvation = 4.144956 kcal Electronic energy + Delta-G solvation = -17945.147312 eV Core-core repulsion = 15337.761615 eV Total energy + Delta-G solvation = -2607.385697 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.00958 -36.45212 -34.33253 -32.75804 -31.74360 -29.82038 -28.58209 -26.56863 -25.87652 -23.39954 -22.65769 -20.90055 -20.77732 -19.20626 -16.68265 -16.38524 -15.28406 -14.96518 -14.82854 -14.26404 -13.99961 -13.57690 -13.25046 -13.23219 -12.73295 -12.64332 -12.24009 -12.20327 -11.79614 -11.59739 -11.25594 -11.07475 -11.00900 -10.94438 -10.85499 -10.66250 -10.58710 -10.26839 -10.25090 -9.85817 -9.67700 -8.82083 -8.48796 -8.03553 -6.45628 -6.00220 -4.15700 2.10951 2.36145 3.28431 3.32780 3.36230 4.11007 4.41134 4.57355 5.14083 5.17431 5.23148 5.31926 5.43467 5.45568 5.58280 5.79231 5.81676 5.91855 5.94645 5.98301 6.02416 6.04321 6.07213 6.19910 6.22978 6.31805 6.37437 6.49151 6.58263 6.67375 6.72134 7.03750 7.13873 7.19998 7.32102 7.42207 7.66692 7.82690 8.18205 8.32105 8.54616 8.93459 9.50950 10.97018 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.011937 B = 0.008913 C = 0.005608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2345.039194 B = 3140.592710 C = 4991.317585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.121 4.121 3 C -0.138 4.138 4 C 0.127 3.873 5 N -0.611 5.611 6 C 0.251 3.749 7 C -0.531 4.531 8 H 0.058 0.942 9 C 0.062 3.938 10 N -0.895 5.895 11 Si 0.895 3.105 12 H -0.277 1.277 13 H -0.286 1.286 14 H -0.276 1.276 15 C 0.242 3.758 16 C -0.224 4.224 17 C -0.076 4.076 18 C -0.204 4.204 19 C -0.047 4.047 20 C -0.110 4.110 21 C -0.188 4.188 22 H 0.053 0.947 23 H 0.049 0.951 24 H 0.051 0.949 25 H 0.061 0.939 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.061 0.939 31 H 0.029 0.971 32 H 0.034 0.966 33 H 0.264 0.736 34 H 0.112 0.888 35 H 0.107 0.893 36 H 0.105 0.895 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.058 0.942 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.295 -3.465 9.714 11.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.177 4.177 4 C 0.002 3.998 5 N -0.315 5.315 6 C 0.132 3.868 7 C -0.570 4.570 8 H 0.077 0.923 9 C -0.140 4.140 10 N -0.534 5.534 11 Si 0.723 3.277 12 H -0.203 1.203 13 H -0.212 1.212 14 H -0.201 1.201 15 C 0.136 3.864 16 C -0.247 4.247 17 C -0.095 4.095 18 C -0.225 4.225 19 C -0.048 4.048 20 C -0.167 4.167 21 C -0.210 4.210 22 H 0.072 0.928 23 H 0.068 0.932 24 H 0.070 0.930 25 H 0.080 0.920 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.092 0.908 30 H 0.079 0.921 31 H 0.047 0.953 32 H 0.052 0.948 33 H 0.074 0.926 34 H 0.130 0.870 35 H 0.125 0.875 36 H 0.123 0.877 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -5.334 -3.454 9.299 11.263 hybrid contribution 1.016 -0.193 -0.455 1.130 sum -4.318 -3.647 8.844 10.496 Atomic orbital electron populations 1.21756 0.96189 1.01041 1.01757 1.21460 0.95578 0.97148 1.01773 1.22082 0.97034 0.96149 1.02410 1.21279 0.92466 0.84133 1.01890 1.47141 1.67736 1.12230 1.04428 1.19235 0.95967 0.92773 0.78864 1.21560 0.97149 1.31914 1.06355 0.92347 1.24951 0.97789 0.94976 0.96301 1.69924 1.35680 1.33421 1.14410 0.86598 0.84872 0.78391 0.77849 1.20263 1.21195 1.20132 1.17901 0.91168 0.91302 0.86060 1.20559 1.12355 1.00338 0.91493 1.20644 0.97801 0.94484 0.96567 1.20510 1.09369 0.96005 0.96590 1.19585 0.96936 0.95419 0.92826 1.20747 1.00894 0.93145 1.01942 1.20761 1.07469 0.94568 0.98230 0.92794 0.93159 0.92953 0.91992 0.92306 0.92132 0.91758 0.90822 0.92061 0.95281 0.94800 0.92636 0.87011 0.87474 0.87731 0.91616 0.91754 0.92312 0.85147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.91 37.16 0.37 -1.29 16 2 C -0.12 -1.51 5.93 -26.73 -0.16 -1.67 16 3 C -0.14 -2.11 5.54 -26.73 -0.15 -2.26 16 4 C 0.13 2.25 5.17 -4.04 -0.02 2.23 16 5 N -0.61 -13.05 2.59 -173.12 -0.45 -13.50 16 6 C 0.25 6.31 4.91 -5.19 -0.03 6.29 16 7 C -0.53 -14.55 9.39 -34.44 -0.32 -14.87 16 8 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 9 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 10 N -0.90 -25.71 13.29 55.43 0.74 -24.98 16 11 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 14 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 15 C 0.24 5.01 6.55 -83.79 -0.55 4.46 16 16 C -0.22 -4.04 9.21 -39.38 -0.36 -4.41 16 17 C -0.08 -1.25 10.04 -39.61 -0.40 -1.65 16 18 C -0.20 -3.39 9.70 -39.54 -0.38 -3.77 16 19 C -0.05 -0.84 5.88 -104.65 -0.62 -1.46 16 20 C -0.11 -1.64 10.01 36.01 0.36 -1.28 16 21 C -0.19 -3.93 8.86 -39.38 -0.35 -4.28 16 22 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.05 0.48 8.14 -51.92 -0.42 0.06 16 24 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.07 1.37 8.07 -51.93 -0.42 0.95 16 30 H 0.06 1.00 6.19 -51.93 -0.32 0.68 16 31 H 0.03 0.77 8.07 -51.93 -0.42 0.35 16 32 H 0.03 0.91 6.20 -51.93 -0.32 0.58 16 33 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 34 H 0.11 1.83 6.14 -52.49 -0.32 1.50 16 35 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 36 H 0.10 1.48 8.06 -52.48 -0.42 1.05 16 37 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.06 0.95 8.08 -51.93 -0.42 0.53 16 39 H 0.06 0.74 8.09 -51.92 -0.42 0.32 16 40 H 0.13 3.00 6.14 -52.48 -0.32 2.67 16 LS Contribution 327.64 15.07 4.94 4.94 Total: -1.00 -28.50 327.64 -9.24 -37.73 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -6.74 Total: 1.74 kcal Atomic # 6 Polarization: -19.63 SS G_CDS: -2.70 Total: -22.33 kcal Atomic # 7 Polarization: -38.77 SS G_CDS: 0.29 Total: -38.48 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -28.50 -9.24 -37.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054965075.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.880 kcal (2) G-P(sol) polarization free energy of solvation -28.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds