Wall clock time and date at job start Mon Mar 30 2020 06:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47115 * 2 1 4 4 C 1.53000 * 109.47295 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47125 * 180.02562 * 4 3 2 6 6 C 1.46502 * 119.99878 * 269.99706 * 5 4 3 7 7 C 1.50702 * 109.47127 * 270.00175 * 6 5 4 8 8 H 1.08004 * 119.99967 * 0.02562 * 7 6 5 9 9 C 1.37877 * 119.99901 * 179.97438 * 7 6 5 10 10 N 1.31520 * 119.99871 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 120.00139 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.46805 * 60.00148 * 11 9 7 13 13 H 1.48492 * 109.47397 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.47109 * 300.00585 * 11 9 7 15 15 C 1.39666 * 120.00013 * 89.99928 * 5 4 3 16 16 C 1.38937 * 120.07615 * 0.23111 * 15 5 4 17 17 C 1.38081 * 119.92453 * 180.27825 * 16 15 5 18 18 C 1.38308 * 120.07401 * 359.48697 * 17 16 15 19 19 C 1.38269 * 120.15155 * 0.25953 * 18 17 16 20 20 C 1.50699 * 119.96415 * 180.02562 * 19 18 17 21 21 C 1.38121 * 120.07065 * 359.97438 * 19 18 17 22 22 H 1.08993 * 109.47336 * 60.00114 * 1 2 3 23 23 H 1.09007 * 109.46670 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.47108 * 299.99535 * 1 2 3 25 25 H 1.09005 * 109.47108 * 240.00465 * 2 1 3 26 26 H 1.08996 * 109.47642 * 120.00577 * 2 1 3 27 27 H 1.08999 * 109.47136 * 60.00010 * 3 2 1 28 28 H 1.09006 * 109.46956 * 300.00375 * 3 2 1 29 29 H 1.08999 * 109.47299 * 59.99768 * 4 3 2 30 30 H 1.09000 * 109.46576 * 300.00296 * 4 3 2 31 31 H 1.09000 * 109.47224 * 30.00006 * 6 5 4 32 32 H 1.08996 * 109.47050 * 149.99681 * 6 5 4 33 33 H 0.96998 * 119.99314 * 179.97438 * 10 9 7 34 34 H 1.07998 * 120.03482 * 0.02562 * 16 15 5 35 35 H 1.08002 * 119.96548 * 179.77227 * 17 16 15 36 36 H 1.08004 * 119.92377 * 180.23461 * 18 17 16 37 37 H 1.08998 * 109.47167 * 89.99479 * 20 19 18 38 38 H 1.09002 * 109.47050 * 210.00251 * 20 19 18 39 39 H 1.09008 * 109.47029 * 329.99670 * 20 19 18 40 40 H 1.08007 * 120.03411 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0583 2.8238 0.0000 6 6 4.3020 3.5151 -1.2685 7 6 5.7251 3.2786 -1.7042 8 1 6.3822 2.6734 -1.0972 9 6 6.1879 3.8338 -2.8783 10 7 5.3875 4.5704 -3.6177 11 14 7.9521 3.5413 -3.4181 12 1 8.1802 2.0847 -3.5958 13 1 8.1990 4.2419 -4.7038 14 1 8.8796 4.0649 -2.3834 15 6 4.2915 3.4815 1.2098 16 6 4.0656 2.8257 2.4137 17 6 4.2918 3.4808 3.6080 18 6 4.7528 4.7848 3.6067 19 6 4.9837 5.4386 2.4105 20 6 5.4866 6.8592 2.4140 21 6 4.7550 4.7908 1.2123 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0278 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 1.6767 1.9563 0.8900 28 1 1.6766 1.9564 -0.8900 29 1 3.9330 0.9288 -0.8908 30 1 3.9336 0.9285 0.8891 31 1 3.6209 3.1314 -2.0281 32 1 4.1349 4.5842 -1.1375 33 1 5.7133 4.9613 -4.4435 34 1 3.7096 1.8061 2.4153 35 1 4.1128 2.9729 4.5441 36 1 4.9325 5.2936 4.5423 37 1 6.5766 6.8588 2.4145 38 1 5.1238 7.3753 1.5251 39 1 5.1231 7.3711 3.3051 40 1 4.9351 5.3022 0.2782 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054965075.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:29 Heat of formation + Delta-G solvation = -8.878365 kcal Electronic energy + Delta-G solvation = -17945.712046 eV Core-core repulsion = 15337.761615 eV Total energy + Delta-G solvation = -2607.950431 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.48430 -37.88823 -35.72285 -34.65185 -33.18207 -31.13411 -30.32117 -27.99075 -27.43066 -25.08940 -24.11843 -22.28144 -22.02989 -20.70726 -18.59565 -18.11883 -16.93901 -16.40079 -16.21828 -15.88309 -15.36654 -14.95798 -14.69203 -14.46686 -14.33003 -14.11511 -13.63505 -13.49741 -13.21511 -13.06821 -12.92995 -12.77746 -12.54521 -12.33209 -12.21724 -12.11310 -12.02702 -11.83739 -11.69249 -11.49344 -11.30243 -10.64667 -10.41466 -9.45168 -8.37295 -7.81858 -6.38110 0.68599 0.93203 1.35514 1.37521 1.45839 2.32831 2.59222 3.05338 3.14049 3.94640 4.04431 4.12198 4.20706 4.27105 4.35335 4.47564 4.56537 4.68110 4.74294 4.79190 4.80952 4.86262 4.87509 4.96762 5.01896 5.09575 5.11173 5.17874 5.19871 5.30464 5.36784 5.42156 5.48129 5.60857 5.71280 5.78094 5.95601 6.07409 6.26390 6.51980 6.83515 6.97143 7.33847 8.82610 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.011937 B = 0.008913 C = 0.005608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2345.039194 B = 3140.592710 C = 4991.317585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.116 4.116 3 C -0.126 4.126 4 C 0.126 3.874 5 N -0.623 5.623 6 C 0.272 3.728 7 C -0.543 4.543 8 H 0.048 0.952 9 C 0.013 3.987 10 N -0.926 5.926 11 Si 0.960 3.040 12 H -0.269 1.269 13 H -0.278 1.278 14 H -0.273 1.273 15 C 0.215 3.785 16 C -0.225 4.225 17 C -0.069 4.069 18 C -0.198 4.198 19 C -0.053 4.053 20 C -0.109 4.109 21 C -0.223 4.223 22 H 0.045 0.955 23 H 0.068 0.932 24 H 0.056 0.944 25 H 0.060 0.940 26 H 0.076 0.924 27 H 0.060 0.940 28 H 0.040 0.960 29 H 0.057 0.943 30 H 0.081 0.919 31 H 0.006 0.994 32 H 0.007 0.993 33 H 0.267 0.733 34 H 0.130 0.870 35 H 0.148 0.852 36 H 0.140 0.860 37 H 0.072 0.928 38 H 0.053 0.947 39 H 0.089 0.911 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.920 -4.480 12.312 13.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.154 4.154 3 C -0.165 4.165 4 C 0.003 3.997 5 N -0.330 5.330 6 C 0.150 3.850 7 C -0.581 4.581 8 H 0.066 0.934 9 C -0.186 4.186 10 N -0.566 5.566 11 Si 0.785 3.215 12 H -0.194 1.194 13 H -0.203 1.203 14 H -0.199 1.199 15 C 0.110 3.890 16 C -0.247 4.247 17 C -0.088 4.088 18 C -0.218 4.218 19 C -0.054 4.054 20 C -0.166 4.166 21 C -0.246 4.246 22 H 0.064 0.936 23 H 0.087 0.913 24 H 0.075 0.925 25 H 0.079 0.921 26 H 0.094 0.906 27 H 0.079 0.921 28 H 0.058 0.942 29 H 0.075 0.925 30 H 0.099 0.901 31 H 0.024 0.976 32 H 0.025 0.975 33 H 0.076 0.924 34 H 0.148 0.852 35 H 0.166 0.834 36 H 0.158 0.842 37 H 0.091 0.909 38 H 0.072 0.928 39 H 0.107 0.893 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.968 -4.478 11.929 13.676 hybrid contribution 0.880 0.170 -1.155 1.462 sum -4.089 -4.308 10.774 12.303 Atomic orbital electron populations 1.21740 0.94936 1.02247 1.01618 1.21437 0.96623 0.94804 1.02565 1.21954 0.95173 0.98174 1.01179 1.21427 0.93991 0.82346 1.01956 1.47001 1.69154 1.13380 1.03464 1.18673 0.94466 0.91467 0.80347 1.21763 0.98042 1.31796 1.06534 0.93351 1.25778 1.01973 0.94572 0.96283 1.70038 1.37587 1.34172 1.14811 0.85572 0.79673 0.78661 0.77580 1.19356 1.20269 1.19863 1.18213 0.92504 0.91614 0.86654 1.20807 1.11861 1.01143 0.90911 1.21136 0.95805 0.94427 0.97406 1.20951 1.07585 0.96209 0.97098 1.19955 0.96269 0.96795 0.92402 1.20794 1.01276 0.91567 1.02952 1.20701 1.10348 0.95435 0.98088 0.93575 0.91255 0.92524 0.92117 0.90578 0.92136 0.94159 0.92459 0.90075 0.97635 0.97546 0.92395 0.85239 0.83416 0.84232 0.90919 0.92808 0.89262 0.88967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.03 9.91 71.98 0.71 -2.32 16 2 C -0.12 -2.74 5.93 30.59 0.18 -2.55 16 3 C -0.13 -3.89 5.54 30.59 0.17 -3.73 16 4 C 0.13 4.57 5.17 86.38 0.45 5.02 16 5 N -0.62 -27.92 2.59 -701.63 -1.82 -29.74 16 6 C 0.27 14.67 4.91 85.63 0.42 15.09 16 7 C -0.54 -31.16 9.39 25.60 0.24 -30.92 16 8 H 0.05 2.81 7.81 -2.91 -0.02 2.79 16 9 C 0.01 0.75 5.46 84.65 0.46 1.21 16 10 N -0.93 -55.24 13.29 21.45 0.28 -54.95 16 11 Si 0.96 44.72 29.54 68.60 2.03 46.74 16 12 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 13 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 14 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 15 C 0.21 9.08 6.55 38.22 0.25 9.33 16 16 C -0.22 -7.68 9.21 22.40 0.21 -7.48 16 17 C -0.07 -2.01 10.04 22.25 0.22 -1.79 16 18 C -0.20 -5.91 9.70 22.29 0.22 -5.69 16 19 C -0.05 -1.89 5.88 -19.89 -0.12 -2.00 16 20 C -0.11 -3.13 10.01 71.24 0.71 -2.42 16 21 C -0.22 -9.73 8.86 22.40 0.20 -9.53 16 22 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 23 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 24 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 25 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 26 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16 29 H 0.06 2.22 8.07 -2.39 -0.02 2.20 16 30 H 0.08 2.58 6.19 -2.39 -0.01 2.57 16 31 H 0.01 0.32 8.07 -2.39 -0.02 0.30 16 32 H 0.01 0.39 6.20 -2.39 -0.01 0.37 16 33 H 0.27 15.00 8.31 -92.71 -0.77 14.22 16 34 H 0.13 3.88 6.14 -2.91 -0.02 3.86 16 35 H 0.15 3.12 8.06 -2.91 -0.02 3.10 16 36 H 0.14 3.21 8.06 -2.91 -0.02 3.18 16 37 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.05 1.63 8.08 -2.39 -0.02 1.61 16 39 H 0.09 1.99 8.09 -2.38 -0.02 1.97 16 40 H 0.09 4.65 6.14 -2.91 -0.02 4.63 16 Total: -1.00 -64.31 327.64 5.80 -58.51 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: 0.98 Total: 17.23 kcal Atomic # 6 Polarization: -42.11 SS G_CDS: 4.32 Total: -37.79 kcal Atomic # 7 Polarization: -83.16 SS G_CDS: -1.53 Total: -84.69 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.74 kcal Total: -64.31 5.80 -58.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054965075.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.629 kcal (2) G-P(sol) polarization free energy of solvation -64.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds