Wall clock time and date at job start Mon Mar 30 2020 05:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47431 * 2 1 4 4 C 1.53001 * 109.47164 * 59.99667 * 3 2 1 5 5 C 1.52997 * 109.47043 * 299.99973 * 3 2 1 6 6 N 1.46896 * 109.47205 * 179.97438 * 3 2 1 7 7 C 1.46900 * 111.00075 * 304.57804 * 6 3 2 8 8 H 1.08998 * 109.47266 * 343.34389 * 7 6 3 9 9 C 1.50705 * 109.46913 * 103.34080 * 7 6 3 10 10 H 1.07998 * 120.00049 * 31.90433 * 9 7 6 11 11 C 1.37883 * 119.99793 * 211.90295 * 9 7 6 12 12 N 1.31520 * 120.00073 * 5.36178 * 11 9 7 13 13 Si 1.86798 * 119.99783 * 185.36136 * 11 9 7 14 14 H 1.48505 * 109.46991 * 90.00320 * 13 11 9 15 15 H 1.48502 * 109.46910 * 209.99555 * 13 11 9 16 16 H 1.48495 * 109.47265 * 330.00101 * 13 11 9 17 17 C 1.50697 * 109.47263 * 223.33888 * 7 6 3 18 18 C 1.38236 * 120.00331 * 311.90095 * 17 7 6 19 19 C 1.38234 * 120.00021 * 179.81047 * 18 17 7 20 20 C 1.38234 * 120.00036 * 0.39400 * 19 18 17 21 21 C 1.38239 * 120.00016 * 359.85733 * 20 19 18 22 22 C 1.38234 * 119.99851 * 359.95848 * 21 20 19 23 23 H 1.08992 * 109.47327 * 300.00498 * 1 2 3 24 24 H 1.09002 * 109.47042 * 60.00494 * 1 2 3 25 25 H 1.08997 * 109.47797 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46781 * 239.99203 * 2 1 3 27 27 H 1.08999 * 109.46702 * 120.00185 * 2 1 3 28 28 H 1.08998 * 109.47245 * 173.16675 * 4 3 2 29 29 H 1.08999 * 109.47259 * 293.16947 * 4 3 2 30 30 H 1.09007 * 109.46628 * 53.17153 * 4 3 2 31 31 H 1.09000 * 109.47118 * 306.25034 * 5 3 2 32 32 H 1.09002 * 109.47675 * 66.25155 * 5 3 2 33 33 H 1.08999 * 109.47063 * 186.25676 * 5 3 2 34 34 H 1.00902 * 111.00319 * 180.62347 * 6 3 2 35 35 H 0.96998 * 119.99705 * 180.02562 * 12 11 9 36 36 H 1.08000 * 119.99439 * 359.97438 * 18 17 7 37 37 H 1.08000 * 120.00164 * 180.23516 * 19 18 17 38 38 H 1.08000 * 120.00081 * 179.83502 * 20 19 18 39 39 H 1.08000 * 120.00122 * 179.97438 * 21 20 19 40 40 H 1.08000 * 119.99940 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.5300 2.1637 1.2492 5 6 1.5301 2.1637 -1.2492 6 7 3.5090 1.4424 0.0006 7 6 4.0350 0.6642 1.1301 8 1 3.2458 0.5141 1.8668 9 6 4.5212 -0.6737 0.6353 10 1 4.9336 -0.7644 -0.3588 11 6 4.4397 -1.7818 1.4516 12 7 3.8426 -1.6952 2.6203 13 14 5.1773 -3.4062 0.8978 14 1 6.5904 -3.4870 1.3473 15 1 4.4048 -4.5279 1.4895 16 1 5.1232 -3.4949 -0.5835 17 6 5.1795 1.4111 1.7651 18 6 6.1866 1.9337 0.9756 19 6 7.2344 2.6222 1.5578 20 6 7.2793 2.7811 2.9302 21 6 6.2748 2.2540 3.7203 22 6 5.2251 1.5688 3.1377 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5140 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 1.9898 3.1500 1.3125 29 1 0.4469 2.2709 1.1902 30 1 1.7902 1.5841 2.1350 31 1 1.7992 1.5893 -2.1357 32 1 0.4459 2.2617 -1.1951 33 1 1.9821 3.1539 -1.3070 34 1 3.8707 2.3843 0.0109 35 1 3.7856 -2.4747 3.1947 36 1 6.1534 1.8063 -0.0964 37 1 8.0193 3.0338 0.9406 38 1 8.0993 3.3167 3.3853 39 1 6.3101 2.3777 4.7926 40 1 4.4405 1.1566 3.7550 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055014849.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:18 Heat of formation + Delta-G solvation = 12.697150 kcal Electronic energy + Delta-G solvation = -18816.342590 eV Core-core repulsion = 16209.327743 eV Total energy + Delta-G solvation = -2607.014846 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.76251 -37.41851 -33.59808 -31.76341 -30.05757 -29.93167 -28.33587 -26.74774 -25.81278 -23.33559 -22.53665 -21.56204 -20.01022 -17.79028 -16.42701 -16.00771 -15.09424 -14.68429 -14.37190 -13.97812 -13.80003 -13.62642 -12.97509 -12.73895 -12.53114 -12.28214 -11.89088 -11.65373 -11.53150 -11.40421 -11.33399 -10.96017 -10.82789 -10.66807 -10.55472 -10.22683 -10.06828 -9.95793 -9.91386 -9.48882 -9.22693 -8.46927 -8.06682 -7.70540 -7.20211 -6.01517 -4.02102 2.26598 2.30137 3.31841 3.38584 3.42408 4.42327 4.69140 5.20818 5.31424 5.48651 5.64390 5.68179 5.74114 5.82851 5.86785 5.93519 6.11846 6.15072 6.16173 6.25077 6.34941 6.36725 6.42705 6.50163 6.53062 6.69640 6.76492 6.81110 6.88532 6.95201 7.11023 7.29426 7.34366 7.35676 7.50047 7.73372 7.89687 7.92071 8.20428 8.39066 8.74026 9.08140 9.59350 11.03036 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.014233 B = 0.011187 C = 0.007427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.756470 B = 2502.199780 C = 3769.206289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.108 4.108 3 C 0.118 3.882 4 C -0.178 4.178 5 C -0.134 4.134 6 N -0.674 5.674 7 C 0.229 3.771 8 H 0.062 0.938 9 C -0.475 4.475 10 H 0.061 0.939 11 C 0.063 3.937 12 N -0.891 5.891 13 Si 0.889 3.111 14 H -0.282 1.282 15 H -0.288 1.288 16 H -0.273 1.273 17 C -0.043 4.043 18 C -0.115 4.115 19 C -0.133 4.133 20 C -0.153 4.153 21 C -0.130 4.130 22 C -0.113 4.113 23 H 0.047 0.953 24 H 0.045 0.955 25 H 0.045 0.955 26 H 0.063 0.937 27 H 0.091 0.909 28 H 0.042 0.958 29 H 0.049 0.951 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.050 0.950 33 H 0.043 0.957 34 H 0.315 0.685 35 H 0.261 0.739 36 H 0.118 0.882 37 H 0.106 0.894 38 H 0.104 0.896 39 H 0.106 0.894 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.974 7.187 -1.698 7.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.146 4.146 3 C 0.027 3.973 4 C -0.237 4.237 5 C -0.192 4.192 6 N -0.304 5.304 7 C 0.122 3.878 8 H 0.079 0.921 9 C -0.513 4.513 10 H 0.079 0.921 11 C -0.139 4.139 12 N -0.530 5.530 13 Si 0.718 3.282 14 H -0.208 1.208 15 H -0.214 1.214 16 H -0.198 1.198 17 C -0.044 4.044 18 C -0.134 4.134 19 C -0.151 4.151 20 C -0.171 4.171 21 C -0.148 4.148 22 C -0.132 4.132 23 H 0.066 0.934 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.081 0.919 27 H 0.110 0.890 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.132 0.868 35 H 0.070 0.930 36 H 0.136 0.864 37 H 0.124 0.876 38 H 0.122 0.878 39 H 0.124 0.876 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -1.983 6.532 -2.002 7.114 hybrid contribution 0.446 -0.427 0.697 0.931 sum -1.538 6.105 -1.305 6.430 Atomic orbital electron populations 1.21905 0.97845 1.00555 1.00596 1.21561 0.92832 0.95438 1.04740 1.20784 0.88895 0.95189 0.92458 1.22620 1.00490 0.99923 1.00697 1.21843 0.99483 0.99500 0.98365 1.61068 1.04728 1.16406 1.48175 1.18563 0.90611 0.90356 0.88228 0.92081 1.21015 1.39266 0.90934 1.00096 0.92082 1.24953 0.95018 0.98770 0.95207 1.69886 1.42501 1.30343 1.10228 0.86627 0.79252 0.83397 0.78971 1.20830 1.21416 1.19809 1.21008 0.98436 0.91708 0.93286 1.21000 0.94102 0.98194 1.00067 1.20991 0.98562 1.00820 0.94714 1.20819 0.99145 1.03044 0.94096 1.20999 0.95409 0.99760 0.98678 1.21105 0.98526 0.98273 0.95258 0.93362 0.93605 0.93610 0.91855 0.89009 0.93888 0.93175 0.91958 0.92425 0.93137 0.93774 0.86829 0.92955 0.86352 0.87588 0.87772 0.87631 0.86542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.43 9.21 37.16 0.34 -2.09 16 2 C -0.11 -2.11 4.30 -26.73 -0.12 -2.23 16 3 C 0.12 2.15 0.71 -131.61 -0.09 2.05 16 4 C -0.18 -3.07 7.71 37.16 0.29 -2.79 16 5 C -0.13 -2.07 8.23 37.16 0.31 -1.76 16 6 N -0.67 -13.67 5.72 -95.47 -0.55 -14.22 16 7 C 0.23 5.29 1.46 -70.02 -0.10 5.19 16 8 H 0.06 1.54 3.94 -51.93 -0.20 1.34 16 9 C -0.47 -12.33 7.40 -34.44 -0.25 -12.58 16 10 H 0.06 1.65 7.82 -52.49 -0.41 1.24 16 11 C 0.06 1.66 5.45 -17.82 -0.10 1.56 16 12 N -0.89 -24.19 12.81 55.43 0.71 -23.48 16 13 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 14 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 15 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 16 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 17 C -0.04 -0.94 4.66 -104.62 -0.49 -1.43 16 18 C -0.12 -2.34 8.73 -39.58 -0.35 -2.68 16 19 C -0.13 -2.39 10.05 -39.58 -0.40 -2.79 16 20 C -0.15 -2.68 10.05 -39.58 -0.40 -3.08 16 21 C -0.13 -2.44 10.05 -39.58 -0.40 -2.84 16 22 C -0.11 -2.42 9.67 -39.58 -0.38 -2.80 16 23 H 0.05 0.74 6.59 -51.93 -0.34 0.40 16 24 H 0.04 0.65 6.57 -51.93 -0.34 0.31 16 25 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 27 H 0.09 2.15 6.14 -51.93 -0.32 1.83 16 28 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.77 6.80 -51.93 -0.35 0.41 16 30 H 0.06 1.21 6.54 -51.92 -0.34 0.87 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.05 0.70 6.77 -51.93 -0.35 0.34 16 33 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.31 6.04 7.57 -39.29 -0.30 5.74 16 35 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 36 H 0.12 2.36 7.96 -52.49 -0.42 1.94 16 37 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 38 H 0.10 1.53 8.06 -52.49 -0.42 1.10 16 39 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 40 H 0.12 2.59 7.98 -52.49 -0.42 2.18 16 LS Contribution 314.96 15.07 4.75 4.75 Total: -1.00 -26.52 314.96 -8.56 -35.08 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: -6.31 Total: 9.97 kcal Atomic # 6 Polarization: -26.14 SS G_CDS: -2.14 Total: -28.28 kcal Atomic # 7 Polarization: -37.86 SS G_CDS: 0.16 Total: -37.70 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -26.52 -8.56 -35.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055014849.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.778 kcal (2) G-P(sol) polarization free energy of solvation -26.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds