Wall clock time and date at job start Mon Mar 30 2020 05:57:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47167 * 2 1 4 4 C 1.53000 * 109.46855 * 60.00316 * 3 2 1 5 5 C 1.53008 * 109.47149 * 300.00581 * 3 2 1 6 6 N 1.46902 * 109.47479 * 180.02562 * 3 2 1 7 7 C 1.46897 * 110.99831 * 62.96986 * 6 3 2 8 8 H 1.08996 * 109.47509 * 348.04052 * 7 6 3 9 9 C 1.50708 * 109.46717 * 228.04688 * 7 6 3 10 10 H 1.07994 * 119.99960 * 125.74915 * 9 7 6 11 11 C 1.37877 * 119.99712 * 305.73994 * 9 7 6 12 12 N 1.31512 * 120.00532 * 357.45142 * 11 9 7 13 13 Si 1.86803 * 119.99663 * 177.44486 * 11 9 7 14 14 H 1.48503 * 109.46909 * 60.00316 * 13 11 9 15 15 H 1.48501 * 109.47195 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47368 * 300.00777 * 13 11 9 17 17 C 1.50701 * 109.47177 * 108.04793 * 7 6 3 18 18 C 1.38233 * 119.99839 * 212.77381 * 17 7 6 19 19 C 1.38233 * 119.99901 * 180.02562 * 18 17 7 20 20 C 1.38234 * 120.00054 * 359.95238 * 19 18 17 21 21 C 1.38240 * 120.00126 * 0.02562 * 20 19 18 22 22 C 1.38233 * 119.99850 * 0.06499 * 21 20 19 23 23 H 1.09006 * 109.46843 * 299.99130 * 1 2 3 24 24 H 1.08997 * 109.47676 * 59.99942 * 1 2 3 25 25 H 1.09007 * 109.46681 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.46594 * 240.00127 * 2 1 3 27 27 H 1.09002 * 109.47752 * 120.00545 * 2 1 3 28 28 H 1.09008 * 109.47263 * 175.70935 * 4 3 2 29 29 H 1.08999 * 109.47460 * 295.70816 * 4 3 2 30 30 H 1.08996 * 109.47300 * 55.71017 * 4 3 2 31 31 H 1.09003 * 109.47030 * 306.26610 * 5 3 2 32 32 H 1.08999 * 109.47306 * 66.27003 * 5 3 2 33 33 H 1.09004 * 109.46787 * 186.26702 * 5 3 2 34 34 H 1.00896 * 110.99443 * 299.01412 * 6 3 2 35 35 H 0.96992 * 120.00263 * 179.97438 * 12 11 9 36 36 H 1.07996 * 120.00153 * 359.97325 * 18 17 7 37 37 H 1.08002 * 120.00210 * 179.97438 * 19 18 17 38 38 H 1.08006 * 120.00208 * 179.72608 * 20 19 18 39 39 H 1.07996 * 120.00235 * 179.97438 * 21 20 19 40 40 H 1.08002 * 120.00244 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.5300 2.1636 1.2493 5 6 1.5298 2.1638 -1.2492 6 7 3.5090 1.4425 -0.0006 7 6 4.0349 0.8195 -1.2225 8 1 3.2264 0.3119 -1.7486 9 6 5.1019 -0.1802 -0.8574 10 1 5.0280 -1.2001 -1.2049 11 6 6.1726 0.2073 -0.0798 12 7 6.2890 1.4606 0.3014 13 14 7.4577 -1.0479 0.4323 14 1 8.0871 -1.6341 -0.7783 15 1 8.4972 -0.3831 1.2587 16 1 6.8102 -2.1245 1.2241 17 6 4.6254 1.8815 -2.1138 18 6 4.5637 1.7435 -3.4879 19 6 5.1058 2.7174 -4.3054 20 6 5.7088 3.8299 -3.7489 21 6 5.7702 3.9682 -2.3748 22 6 5.2298 2.9933 -1.5573 23 1 -0.3633 0.5137 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0278 0.0005 26 1 1.8932 -0.5139 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 1.9548 3.1668 1.2886 29 1 0.4427 2.2307 1.2118 30 1 1.8292 1.6073 2.1376 31 1 1.7986 1.5893 -2.1357 32 1 0.4457 2.2620 -1.1948 33 1 1.9819 3.1540 -1.3070 34 1 3.8709 0.9855 0.8229 35 1 7.0419 1.7331 0.8487 36 1 4.0926 0.8743 -3.9226 37 1 5.0579 2.6094 -5.3789 38 1 6.1364 4.5887 -4.3876 39 1 6.2417 4.8371 -1.9401 40 1 5.2780 3.1011 -0.4837 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055014851.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:20 Heat of formation + Delta-G solvation = 20.072382 kcal Electronic energy + Delta-G solvation = -19026.595782 eV Core-core repulsion = 16419.900750 eV Total energy + Delta-G solvation = -2606.695032 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.56064 -37.21970 -33.84092 -31.23025 -29.94464 -29.49016 -28.45345 -26.75065 -25.87982 -23.19953 -22.46524 -21.15804 -19.85316 -17.89184 -16.50878 -15.63746 -15.32667 -14.50216 -14.26432 -13.96379 -13.71385 -13.39624 -13.04536 -12.29142 -12.27573 -11.95936 -11.80188 -11.66155 -11.50939 -11.41429 -11.23644 -11.03564 -10.84000 -10.68378 -10.57002 -10.25216 -10.12182 -9.90047 -9.83471 -9.49826 -9.15113 -8.61684 -7.66964 -7.27025 -6.89157 -5.97035 -4.21320 2.63235 2.76768 3.26413 3.31835 3.34916 4.35156 5.08510 5.21908 5.40556 5.44778 5.48063 5.79294 5.83053 5.91738 5.95642 6.04755 6.11060 6.17317 6.26513 6.33735 6.47231 6.49115 6.50880 6.57873 6.59998 6.69443 6.81057 6.91121 7.00641 7.02988 7.18366 7.32290 7.43091 7.66035 7.72638 7.92955 8.03259 8.23588 8.45828 8.49634 8.99116 9.07483 9.47822 10.91590 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.014570 B = 0.011520 C = 0.007697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.261901 B = 2430.004910 C = 3636.934741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.149 4.149 3 C 0.106 3.894 4 C -0.133 4.133 5 C -0.132 4.132 6 N -0.653 5.653 7 C 0.243 3.757 8 H 0.021 0.979 9 C -0.541 4.541 10 H 0.056 0.944 11 C 0.079 3.921 12 N -0.850 5.850 13 Si 0.887 3.113 14 H -0.278 1.278 15 H -0.286 1.286 16 H -0.278 1.278 17 C -0.017 4.017 18 C -0.142 4.142 19 C -0.148 4.148 20 C -0.155 4.155 21 C -0.155 4.155 22 C -0.047 4.047 23 H 0.051 0.949 24 H 0.052 0.948 25 H 0.041 0.959 26 H 0.064 0.936 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.047 0.953 30 H 0.046 0.954 31 H 0.051 0.949 32 H 0.042 0.958 33 H 0.057 0.943 34 H 0.348 0.652 35 H 0.262 0.738 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.095 0.905 39 H 0.098 0.902 40 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.877 1.720 -0.801 7.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.188 4.188 3 C 0.014 3.986 4 C -0.191 4.191 5 C -0.189 4.189 6 N -0.285 5.285 7 C 0.135 3.865 8 H 0.039 0.961 9 C -0.579 4.579 10 H 0.074 0.926 11 C -0.127 4.127 12 N -0.484 5.484 13 Si 0.715 3.285 14 H -0.204 1.204 15 H -0.212 1.212 16 H -0.203 1.203 17 C -0.019 4.019 18 C -0.161 4.161 19 C -0.166 4.166 20 C -0.173 4.173 21 C -0.173 4.173 22 C -0.065 4.065 23 H 0.070 0.930 24 H 0.071 0.929 25 H 0.060 0.940 26 H 0.083 0.917 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.076 0.924 34 H 0.168 0.832 35 H 0.072 0.928 36 H 0.116 0.884 37 H 0.115 0.885 38 H 0.113 0.887 39 H 0.116 0.884 40 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -6.687 2.498 -0.910 7.196 hybrid contribution 0.878 -1.699 0.231 1.926 sum -5.809 0.799 -0.679 5.903 Atomic orbital electron populations 1.21848 0.97045 1.00405 1.01373 1.22324 0.94979 0.99442 1.02077 1.20944 0.91113 0.92058 0.94517 1.21807 0.99207 1.00846 0.97207 1.21855 0.98641 1.00994 0.97449 1.60724 1.01245 1.60214 1.06269 1.18080 0.92494 0.88602 0.87354 0.96084 1.21265 1.07971 0.95623 1.33078 0.92582 1.24968 0.97052 0.95022 0.95650 1.69896 1.29873 1.14473 1.34204 0.86750 0.81457 0.81700 0.78625 1.20404 1.21199 1.20339 1.20309 0.95174 0.94304 0.92066 1.20863 1.02578 0.98313 0.94308 1.20697 1.02096 0.95870 0.97941 1.20744 1.03076 0.98284 0.95204 1.21165 1.02735 0.99854 0.93566 1.21686 0.91907 0.90745 1.02190 0.93006 0.92914 0.93972 0.91749 0.92584 0.92357 0.93426 0.93526 0.93017 0.93853 0.92404 0.83177 0.92790 0.88376 0.88479 0.88656 0.88423 0.82288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.21 37.16 0.34 -1.72 16 2 C -0.15 -2.51 4.88 -26.73 -0.13 -2.64 16 3 C 0.11 1.88 0.71 -131.60 -0.09 1.78 16 4 C -0.13 -2.11 8.28 37.16 0.31 -1.80 16 5 C -0.13 -2.28 7.29 37.16 0.27 -2.01 16 6 N -0.65 -13.93 4.30 -95.46 -0.41 -14.34 16 7 C 0.24 5.61 1.52 -70.01 -0.11 5.50 16 8 H 0.02 0.49 4.72 -51.93 -0.25 0.24 16 9 C -0.54 -13.83 8.57 -34.44 -0.30 -14.13 16 10 H 0.06 1.46 7.81 -52.49 -0.41 1.05 16 11 C 0.08 2.01 4.90 -17.82 -0.09 1.92 16 12 N -0.85 -21.63 8.59 55.43 0.48 -21.15 16 13 Si 0.89 20.30 29.54 -169.99 -5.02 15.28 16 14 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 15 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 16 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 17 C -0.02 -0.40 4.34 -104.62 -0.45 -0.85 16 18 C -0.14 -3.10 9.69 -39.59 -0.38 -3.49 16 19 C -0.15 -2.97 10.05 -39.58 -0.40 -3.37 16 20 C -0.15 -3.09 10.05 -39.58 -0.40 -3.49 16 21 C -0.15 -3.31 10.05 -39.58 -0.40 -3.70 16 22 C -0.05 -1.10 7.72 -39.58 -0.31 -1.40 16 23 H 0.05 0.67 6.53 -51.93 -0.34 0.33 16 24 H 0.05 0.70 6.57 -51.93 -0.34 0.36 16 25 H 0.04 0.54 8.14 -51.92 -0.42 0.12 16 26 H 0.06 1.19 6.34 -51.93 -0.33 0.87 16 27 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 28 H 0.06 0.96 8.14 -51.92 -0.42 0.53 16 29 H 0.05 0.66 6.67 -51.93 -0.35 0.31 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.05 0.95 6.65 -51.93 -0.35 0.60 16 32 H 0.04 0.64 6.78 -51.93 -0.35 0.29 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.35 8.04 7.34 -39.29 -0.29 7.75 16 35 H 0.26 6.54 8.31 -40.82 -0.34 6.20 16 36 H 0.10 2.02 8.06 -52.49 -0.42 1.59 16 37 H 0.10 1.68 8.06 -52.49 -0.42 1.26 16 38 H 0.10 1.64 8.06 -52.48 -0.42 1.21 16 39 H 0.10 1.88 8.06 -52.49 -0.42 1.46 16 40 H 0.16 3.98 5.60 -52.49 -0.29 3.68 16 LS Contribution 307.26 15.07 4.63 4.63 Total: -1.00 -25.14 307.26 -8.69 -33.83 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: -6.23 Total: 11.15 kcal Atomic # 6 Polarization: -27.27 SS G_CDS: -2.13 Total: -29.40 kcal Atomic # 7 Polarization: -35.55 SS G_CDS: 0.07 Total: -35.49 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -25.14 -8.69 -33.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055014851.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.897 kcal (2) G-P(sol) polarization free energy of solvation -25.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds