Wall clock time and date at job start Mon Mar 30 2020 05:57:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47167 * 2 1 4 4 C 1.53000 * 109.46855 * 60.00316 * 3 2 1 5 5 C 1.53008 * 109.47149 * 300.00581 * 3 2 1 6 6 N 1.46902 * 109.47479 * 180.02562 * 3 2 1 7 7 C 1.46897 * 110.99831 * 62.96986 * 6 3 2 8 8 H 1.08996 * 109.47509 * 348.04052 * 7 6 3 9 9 C 1.50708 * 109.46717 * 228.04688 * 7 6 3 10 10 H 1.07994 * 119.99960 * 125.74915 * 9 7 6 11 11 C 1.37877 * 119.99712 * 305.73994 * 9 7 6 12 12 N 1.31512 * 120.00532 * 357.45142 * 11 9 7 13 13 Si 1.86803 * 119.99663 * 177.44486 * 11 9 7 14 14 H 1.48503 * 109.46909 * 60.00316 * 13 11 9 15 15 H 1.48501 * 109.47195 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47368 * 300.00777 * 13 11 9 17 17 C 1.50701 * 109.47177 * 108.04793 * 7 6 3 18 18 C 1.38233 * 119.99839 * 212.77381 * 17 7 6 19 19 C 1.38233 * 119.99901 * 180.02562 * 18 17 7 20 20 C 1.38234 * 120.00054 * 359.95238 * 19 18 17 21 21 C 1.38240 * 120.00126 * 0.02562 * 20 19 18 22 22 C 1.38233 * 119.99850 * 0.06499 * 21 20 19 23 23 H 1.09006 * 109.46843 * 299.99130 * 1 2 3 24 24 H 1.08997 * 109.47676 * 59.99942 * 1 2 3 25 25 H 1.09007 * 109.46681 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.46594 * 240.00127 * 2 1 3 27 27 H 1.09002 * 109.47752 * 120.00545 * 2 1 3 28 28 H 1.09008 * 109.47263 * 175.70935 * 4 3 2 29 29 H 1.08999 * 109.47460 * 295.70816 * 4 3 2 30 30 H 1.08996 * 109.47300 * 55.71017 * 4 3 2 31 31 H 1.09003 * 109.47030 * 306.26610 * 5 3 2 32 32 H 1.08999 * 109.47306 * 66.27003 * 5 3 2 33 33 H 1.09004 * 109.46787 * 186.26702 * 5 3 2 34 34 H 1.00896 * 110.99443 * 299.01412 * 6 3 2 35 35 H 0.96992 * 120.00263 * 179.97438 * 12 11 9 36 36 H 1.07996 * 120.00153 * 359.97325 * 18 17 7 37 37 H 1.08002 * 120.00210 * 179.97438 * 19 18 17 38 38 H 1.08006 * 120.00208 * 179.72608 * 20 19 18 39 39 H 1.07996 * 120.00235 * 179.97438 * 21 20 19 40 40 H 1.08002 * 120.00244 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.5300 2.1636 1.2493 5 6 1.5298 2.1638 -1.2492 6 7 3.5090 1.4425 -0.0006 7 6 4.0349 0.8195 -1.2225 8 1 3.2264 0.3119 -1.7486 9 6 5.1019 -0.1802 -0.8574 10 1 5.0280 -1.2001 -1.2049 11 6 6.1726 0.2073 -0.0798 12 7 6.2890 1.4606 0.3014 13 14 7.4577 -1.0479 0.4323 14 1 8.0871 -1.6341 -0.7783 15 1 8.4972 -0.3831 1.2587 16 1 6.8102 -2.1245 1.2241 17 6 4.6254 1.8815 -2.1138 18 6 4.5637 1.7435 -3.4879 19 6 5.1058 2.7174 -4.3054 20 6 5.7088 3.8299 -3.7489 21 6 5.7702 3.9682 -2.3748 22 6 5.2298 2.9933 -1.5573 23 1 -0.3633 0.5137 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0278 0.0005 26 1 1.8932 -0.5139 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 1.9548 3.1668 1.2886 29 1 0.4427 2.2307 1.2118 30 1 1.8292 1.6073 2.1376 31 1 1.7986 1.5893 -2.1357 32 1 0.4457 2.2620 -1.1948 33 1 1.9819 3.1540 -1.3070 34 1 3.8709 0.9855 0.8229 35 1 7.0419 1.7331 0.8487 36 1 4.0926 0.8743 -3.9226 37 1 5.0579 2.6094 -5.3789 38 1 6.1364 4.5887 -4.3876 39 1 6.2417 4.8371 -1.9401 40 1 5.2780 3.1011 -0.4837 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055014851.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:20 Heat of formation + Delta-G solvation = 8.658515 kcal Electronic energy + Delta-G solvation = -19027.090724 eV Core-core repulsion = 16419.900750 eV Total energy + Delta-G solvation = -2607.189975 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.18024 -38.75619 -35.58574 -32.98263 -31.47067 -31.08211 -30.00306 -28.15441 -27.67132 -24.62815 -24.12006 -22.81824 -21.55479 -19.36402 -18.38134 -17.28578 -16.98439 -16.16505 -15.79473 -15.61969 -15.15586 -14.97642 -14.61513 -13.96368 -13.85383 -13.57180 -13.21810 -13.11031 -13.01991 -12.94570 -12.80197 -12.59315 -12.50756 -12.45558 -11.97771 -11.86243 -11.62121 -11.48720 -11.43007 -11.11838 -10.88387 -10.54495 -9.35191 -8.99833 -8.54878 -7.88915 -6.19989 0.94037 1.10668 1.41341 1.44190 1.49033 2.44329 3.20095 3.47012 3.84860 4.10452 4.13513 4.40256 4.43002 4.48503 4.55706 4.60972 4.68979 4.81161 4.84428 4.96318 5.01717 5.06476 5.13501 5.17761 5.22852 5.28492 5.32489 5.35951 5.37191 5.57632 5.61989 5.70757 5.75911 5.81592 5.99971 6.11804 6.26249 6.50927 6.60165 6.73354 7.17765 7.31113 7.50846 8.95361 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.014570 B = 0.011520 C = 0.007697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.261901 B = 2430.004910 C = 3636.934741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.143 4.143 3 C 0.099 3.901 4 C -0.126 4.126 5 C -0.122 4.122 6 N -0.657 5.657 7 C 0.250 3.750 8 H 0.013 0.987 9 C -0.563 4.563 10 H 0.040 0.960 11 C 0.049 3.951 12 N -0.856 5.856 13 Si 0.936 3.064 14 H -0.286 1.286 15 H -0.283 1.283 16 H -0.275 1.275 17 C -0.036 4.036 18 C -0.159 4.159 19 C -0.145 4.145 20 C -0.152 4.152 21 C -0.163 4.163 22 C -0.066 4.066 23 H 0.066 0.934 24 H 0.059 0.941 25 H 0.052 0.948 26 H 0.040 0.960 27 H 0.044 0.956 28 H 0.048 0.952 29 H 0.075 0.925 30 H 0.045 0.955 31 H 0.035 0.965 32 H 0.072 0.928 33 H 0.041 0.959 34 H 0.333 0.667 35 H 0.259 0.741 36 H 0.103 0.897 37 H 0.130 0.870 38 H 0.131 0.869 39 H 0.115 0.885 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.580 2.405 -1.409 8.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.182 4.182 3 C 0.008 3.992 4 C -0.183 4.183 5 C -0.180 4.180 6 N -0.286 5.286 7 C 0.142 3.858 8 H 0.031 0.969 9 C -0.601 4.601 10 H 0.059 0.941 11 C -0.156 4.156 12 N -0.490 5.490 13 Si 0.763 3.237 14 H -0.212 1.212 15 H -0.209 1.209 16 H -0.201 1.201 17 C -0.037 4.037 18 C -0.178 4.178 19 C -0.163 4.163 20 C -0.170 4.170 21 C -0.181 4.181 22 C -0.085 4.085 23 H 0.085 0.915 24 H 0.078 0.922 25 H 0.071 0.929 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.093 0.907 30 H 0.064 0.936 31 H 0.054 0.946 32 H 0.091 0.909 33 H 0.060 0.940 34 H 0.152 0.848 35 H 0.069 0.931 36 H 0.121 0.879 37 H 0.148 0.852 38 H 0.149 0.851 39 H 0.133 0.867 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -7.407 3.189 -1.520 8.206 hybrid contribution 1.078 -1.889 0.370 2.206 sum -6.329 1.299 -1.150 6.562 Atomic orbital electron populations 1.21789 0.94137 1.01587 1.02408 1.22206 0.97474 0.98213 1.00350 1.21118 0.89155 0.93073 0.95891 1.21744 1.00784 0.99854 0.95937 1.21765 1.00275 0.99508 0.96409 1.60688 1.03590 1.59525 1.04827 1.17920 0.91612 0.88360 0.87950 0.96938 1.21440 1.09280 0.95587 1.33807 0.94148 1.25411 0.98213 0.96283 0.95721 1.70037 1.29836 1.15072 1.34068 0.85994 0.79697 0.80149 0.77862 1.21221 1.20872 1.20050 1.20383 0.95938 0.94558 0.92853 1.21080 1.03280 0.99307 0.94107 1.21079 1.00665 0.95055 0.99510 1.21126 1.02078 0.98850 0.94938 1.21419 1.02388 0.99887 0.94418 1.21543 0.93534 0.91888 1.01526 0.91492 0.92197 0.92862 0.94122 0.93684 0.93252 0.90668 0.93622 0.94619 0.90934 0.94023 0.84835 0.93079 0.87913 0.85223 0.85149 0.86683 0.84400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.61 9.21 71.98 0.66 -2.94 16 2 C -0.14 -4.81 4.88 30.59 0.15 -4.66 16 3 C 0.10 3.51 0.71 3.53 0.00 3.52 16 4 C -0.13 -3.83 8.28 71.98 0.60 -3.23 16 5 C -0.12 -4.16 7.29 71.98 0.52 -3.63 16 6 N -0.66 -28.79 4.30 -455.92 -1.96 -30.75 16 7 C 0.25 11.93 1.52 43.43 0.07 11.99 16 8 H 0.01 0.61 4.72 -2.39 -0.01 0.60 16 9 C -0.56 -29.68 8.57 25.60 0.22 -29.47 16 10 H 0.04 2.18 7.81 -2.91 -0.02 2.16 16 11 C 0.05 2.52 4.90 84.66 0.41 2.93 16 12 N -0.86 -44.40 8.59 21.45 0.18 -44.21 16 13 Si 0.94 42.25 29.54 68.60 2.03 44.28 16 14 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 15 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 16 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 17 C -0.04 -1.70 4.34 -19.86 -0.09 -1.79 16 18 C -0.16 -6.90 9.69 22.27 0.22 -6.69 16 19 C -0.15 -5.51 10.05 22.27 0.22 -5.29 16 20 C -0.15 -5.66 10.05 22.27 0.22 -5.44 16 21 C -0.16 -6.76 10.05 22.27 0.22 -6.54 16 22 C -0.07 -3.13 7.72 22.27 0.17 -2.96 16 23 H 0.07 1.51 6.53 -2.38 -0.02 1.50 16 24 H 0.06 1.44 6.57 -2.39 -0.02 1.43 16 25 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 26 H 0.04 1.54 6.34 -2.38 -0.02 1.53 16 27 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 29 H 0.07 1.87 6.67 -2.39 -0.02 1.85 16 30 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.03 1.30 6.65 -2.39 -0.02 1.29 16 32 H 0.07 2.01 6.78 -2.39 -0.02 1.99 16 33 H 0.04 1.53 8.14 -2.38 -0.02 1.51 16 34 H 0.33 15.96 7.34 -89.70 -0.66 15.30 16 35 H 0.26 13.14 8.31 -92.71 -0.77 12.36 16 36 H 0.10 4.24 8.06 -2.91 -0.02 4.21 16 37 H 0.13 4.03 8.06 -2.91 -0.02 4.01 16 38 H 0.13 3.93 8.06 -2.91 -0.02 3.90 16 39 H 0.12 4.26 8.06 -2.91 -0.02 4.24 16 40 H 0.14 7.09 5.60 -2.91 -0.02 7.07 16 Total: -1.00 -54.27 307.26 4.22 -50.05 By element: Atomic # 1 Polarization: 34.47 SS G_CDS: 0.36 Total: 34.82 kcal Atomic # 6 Polarization: -57.80 SS G_CDS: 3.61 Total: -54.19 kcal Atomic # 7 Polarization: -73.19 SS G_CDS: -1.78 Total: -74.96 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.28 kcal Total: -54.27 4.22 -50.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055014851.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.711 kcal (2) G-P(sol) polarization free energy of solvation -54.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds