Wall clock time and date at job start Mon Mar 30 2020 05:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47009 * 2 1 4 4 C 1.53003 * 109.46570 * 185.20723 * 3 2 1 5 5 C 1.53009 * 109.46736 * 175.00169 * 4 3 2 6 6 N 1.46897 * 109.47373 * 65.20734 * 3 2 1 7 7 C 1.46902 * 111.00184 * 65.59677 * 6 3 2 8 8 H 1.08999 * 109.46915 * 343.28861 * 7 6 3 9 9 C 1.50704 * 109.47232 * 103.28739 * 7 6 3 10 10 H 1.08001 * 119.99446 * 27.91813 * 9 7 6 11 11 C 1.37872 * 120.00132 * 207.92373 * 9 7 6 12 12 N 1.31512 * 119.99881 * 5.52487 * 11 9 7 13 13 Si 1.86800 * 120.00015 * 185.52867 * 11 9 7 14 14 H 1.48502 * 109.47081 * 89.99843 * 13 11 9 15 15 H 1.48495 * 109.47238 * 209.99648 * 13 11 9 16 16 H 1.48505 * 109.46819 * 329.99850 * 13 11 9 17 17 C 1.50697 * 109.47352 * 223.28814 * 7 6 3 18 18 C 1.38237 * 120.00370 * 318.78221 * 17 7 6 19 19 C 1.38227 * 120.00142 * 179.80862 * 18 17 7 20 20 C 1.38230 * 119.99999 * 0.39727 * 19 18 17 21 21 C 1.38237 * 120.00300 * 359.85794 * 20 19 18 22 22 C 1.38233 * 119.99850 * 359.95378 * 21 20 19 23 23 H 1.09000 * 109.47191 * 64.45478 * 1 2 3 24 24 H 1.09002 * 109.47504 * 184.45000 * 1 2 3 25 25 H 1.08998 * 109.47600 * 304.45630 * 1 2 3 26 26 H 1.08998 * 109.47164 * 239.99518 * 2 1 3 27 27 H 1.09006 * 109.46884 * 119.99611 * 2 1 3 28 28 H 1.08999 * 109.46875 * 305.20179 * 3 2 1 29 29 H 1.09003 * 109.47316 * 294.99613 * 4 3 2 30 30 H 1.08996 * 109.47781 * 54.99841 * 4 3 2 31 31 H 1.09003 * 109.46764 * 299.99782 * 5 4 3 32 32 H 1.09001 * 109.47023 * 59.99753 * 5 4 3 33 33 H 1.09001 * 109.46520 * 179.97438 * 5 4 3 34 34 H 1.00893 * 111.00082 * 189.55317 * 6 3 2 35 35 H 0.97008 * 119.99520 * 179.97438 * 12 11 9 36 36 H 1.08002 * 119.99066 * 0.02562 * 18 17 7 37 37 H 1.08001 * 119.99763 * 180.22771 * 19 18 17 38 38 H 1.08012 * 119.99755 * 179.83265 * 20 19 18 39 39 H 1.08002 * 119.99885 * 179.97438 * 21 20 19 40 40 H 1.07992 * 119.99947 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5644 1.4444 -0.1309 5 6 4.0637 2.8853 -0.2563 6 7 1.6556 2.0978 1.2573 7 6 2.3341 1.4775 2.4031 8 1 2.7277 0.5045 2.1091 9 6 3.4674 2.3621 2.8550 10 1 3.4168 3.4289 2.6942 11 6 4.5688 1.8096 3.4736 12 7 4.6811 0.5030 3.5722 13 14 5.9014 2.9169 4.1717 14 1 5.5825 3.2452 5.5844 15 1 7.2096 2.2170 4.1094 16 1 5.9716 4.1690 3.3762 17 6 1.3528 1.3018 3.5331 18 6 0.4429 2.3021 3.8204 19 6 -0.4598 2.1392 4.8544 20 6 -0.4474 0.9794 5.6065 21 6 0.4659 -0.0187 5.3227 22 6 1.3661 0.1425 4.2861 23 1 -0.3633 0.4431 -0.9272 24 1 -0.3634 -1.0246 0.0797 25 1 -0.3634 0.5814 0.8473 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 1.6025 1.9825 -0.8397 29 1 4.0055 0.9826 0.7524 30 1 3.8536 0.8812 -1.0181 31 1 3.6225 3.3471 -1.1396 32 1 3.7744 3.4485 0.6310 33 1 5.1497 2.8866 -0.3491 34 1 1.8416 3.0888 1.2201 35 1 5.4562 0.1143 4.0071 36 1 0.4352 3.2094 3.2346 37 1 -1.1731 2.9192 5.0765 38 1 -1.1511 0.8533 6.4162 39 1 0.4758 -0.9247 5.9106 40 1 2.0793 -0.6374 4.0642 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055014876.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:23 Heat of formation + Delta-G solvation = 6.039726 kcal Electronic energy + Delta-G solvation = -18937.366837 eV Core-core repulsion = 16330.063303 eV Total energy + Delta-G solvation = -2607.303534 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.54412 -37.10668 -33.31919 -31.40201 -31.33682 -29.86894 -29.10890 -26.43181 -24.86821 -22.98151 -21.45201 -21.23772 -20.36267 -18.42131 -16.96120 -16.08651 -15.06776 -14.78085 -14.06478 -13.97777 -13.71219 -13.21272 -13.04737 -12.60350 -12.36266 -12.32619 -12.06842 -11.76669 -11.63855 -11.31564 -11.02693 -10.90393 -10.83769 -10.46542 -10.35789 -10.13701 -10.07535 -10.03976 -9.88702 -9.59434 -9.14742 -8.54842 -7.90877 -7.54906 -7.22986 -6.13178 -4.18862 2.43490 2.49190 3.23810 3.30976 3.33289 4.33204 4.87381 5.21435 5.35701 5.49558 5.76126 5.78711 5.84697 5.90481 5.97258 6.00866 6.12610 6.17847 6.33309 6.41359 6.48768 6.55902 6.57010 6.62742 6.73143 6.78653 6.90684 6.97558 6.99670 7.09421 7.16040 7.27198 7.37896 7.44686 7.58591 7.74188 7.86031 8.00394 8.13911 8.27245 8.68316 8.93059 9.45630 10.90566 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.014072 B = 0.012290 C = 0.007782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1989.246123 B = 2277.698740 C = 3597.156939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.115 4.115 3 C 0.099 3.901 4 C -0.155 4.155 5 C -0.143 4.143 6 N -0.683 5.683 7 C 0.227 3.773 8 H 0.074 0.926 9 C -0.525 4.525 10 H 0.058 0.942 11 C 0.075 3.925 12 N -0.880 5.880 13 Si 0.884 3.116 14 H -0.280 1.280 15 H -0.287 1.287 16 H -0.274 1.274 17 C -0.008 4.008 18 C -0.108 4.108 19 C -0.137 4.137 20 C -0.157 4.157 21 C -0.133 4.133 22 C -0.113 4.113 23 H 0.039 0.961 24 H 0.037 0.963 25 H 0.069 0.931 26 H 0.048 0.952 27 H 0.067 0.933 28 H 0.058 0.942 29 H 0.095 0.905 30 H 0.037 0.963 31 H 0.031 0.969 32 H 0.071 0.929 33 H 0.039 0.961 34 H 0.330 0.670 35 H 0.263 0.737 36 H 0.110 0.890 37 H 0.102 0.898 38 H 0.101 0.899 39 H 0.103 0.897 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.483 0.292 -3.473 6.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.153 4.153 3 C -0.012 4.012 4 C -0.194 4.194 5 C -0.200 4.200 6 N -0.312 5.312 7 C 0.119 3.881 8 H 0.091 0.909 9 C -0.563 4.563 10 H 0.076 0.924 11 C -0.129 4.129 12 N -0.517 5.517 13 Si 0.712 3.288 14 H -0.206 1.206 15 H -0.213 1.213 16 H -0.199 1.199 17 C -0.009 4.009 18 C -0.126 4.126 19 C -0.155 4.155 20 C -0.176 4.176 21 C -0.151 4.151 22 C -0.132 4.132 23 H 0.058 0.942 24 H 0.056 0.944 25 H 0.088 0.912 26 H 0.067 0.933 27 H 0.086 0.914 28 H 0.076 0.924 29 H 0.114 0.886 30 H 0.056 0.944 31 H 0.050 0.950 32 H 0.090 0.910 33 H 0.059 0.941 34 H 0.148 0.852 35 H 0.073 0.927 36 H 0.129 0.871 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -5.936 -0.231 -3.346 6.818 hybrid contribution 1.848 0.925 0.566 2.143 sum -4.088 0.694 -2.779 4.992 Atomic orbital electron populations 1.21626 0.96133 1.00152 1.01726 1.21579 0.95886 0.96629 1.01197 1.21393 0.92643 0.94536 0.92646 1.22256 0.97720 0.97131 1.02307 1.21724 0.99696 0.97640 1.00983 1.60832 1.61097 1.06994 1.02267 1.18399 0.87547 0.97585 0.84552 0.90860 1.21491 1.01455 0.93537 1.39846 0.92391 1.24871 0.97740 0.94842 0.95418 1.69876 1.29764 1.09558 1.42519 0.86720 0.81303 0.80964 0.79847 1.20628 1.21295 1.19869 1.20542 0.92384 0.91158 0.96851 1.20837 0.95687 0.99222 0.96862 1.20943 0.99929 0.97311 0.97299 1.20754 1.00631 0.95304 1.00865 1.20957 0.97075 0.98485 0.98578 1.21077 0.97786 0.98493 0.95824 0.94188 0.94414 0.91163 0.93343 0.91393 0.92389 0.88629 0.94397 0.94957 0.90994 0.94140 0.85245 0.92698 0.87144 0.87983 0.88098 0.87918 0.86385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 9.85 37.16 0.37 -1.84 16 2 C -0.12 -1.98 5.31 -26.73 -0.14 -2.12 16 3 C 0.10 1.75 2.50 -67.71 -0.17 1.58 16 4 C -0.16 -2.91 4.87 -26.72 -0.13 -3.04 16 5 C -0.14 -2.55 9.45 37.16 0.35 -2.20 16 6 N -0.68 -13.19 4.85 -102.18 -0.50 -13.68 16 7 C 0.23 5.05 1.33 -70.01 -0.09 4.96 16 8 H 0.07 1.81 4.11 -51.93 -0.21 1.60 16 9 C -0.52 -12.77 5.69 -34.44 -0.20 -12.97 16 10 H 0.06 1.43 6.94 -52.49 -0.36 1.06 16 11 C 0.08 1.92 5.45 -17.82 -0.10 1.82 16 12 N -0.88 -23.18 12.87 55.43 0.71 -22.46 16 13 Si 0.88 20.45 29.54 -169.99 -5.02 15.43 16 14 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 15 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 16 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 17 C -0.01 -0.18 4.94 -104.62 -0.52 -0.69 16 18 C -0.11 -2.22 9.31 -39.59 -0.37 -2.58 16 19 C -0.14 -2.56 10.05 -39.59 -0.40 -2.95 16 20 C -0.16 -2.88 10.05 -39.58 -0.40 -3.28 16 21 C -0.13 -2.59 10.05 -39.58 -0.40 -2.99 16 22 C -0.11 -2.49 9.67 -39.58 -0.38 -2.87 16 23 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.07 1.24 7.64 -51.93 -0.40 0.85 16 26 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.07 1.34 6.29 -51.93 -0.33 1.01 16 28 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.10 2.16 5.80 -51.93 -0.30 1.86 16 30 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 1.39 5.03 -51.93 -0.26 1.13 16 33 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.33 6.36 6.91 -39.30 -0.27 6.09 16 35 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 36 H 0.11 2.18 7.76 -52.49 -0.41 1.78 16 37 H 0.10 1.63 8.06 -52.49 -0.42 1.21 16 38 H 0.10 1.56 8.06 -52.48 -0.42 1.14 16 39 H 0.10 1.75 8.06 -52.49 -0.42 1.33 16 40 H 0.12 2.73 8.03 -52.49 -0.42 2.31 16 LS Contribution 315.08 15.07 4.75 4.75 Total: -1.00 -25.04 315.08 -8.95 -33.99 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: -6.33 Total: 11.16 kcal Atomic # 6 Polarization: -26.61 SS G_CDS: -2.57 Total: -29.19 kcal Atomic # 7 Polarization: -36.37 SS G_CDS: 0.22 Total: -36.15 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -25.04 -8.95 -33.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055014876.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.033 kcal (2) G-P(sol) polarization free energy of solvation -25.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds