Wall clock time and date at job start Mon Mar 30 2020 05:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47009 * 2 1 4 4 C 1.53003 * 109.46570 * 185.20723 * 3 2 1 5 5 C 1.53009 * 109.46736 * 175.00169 * 4 3 2 6 6 N 1.46897 * 109.47373 * 65.20734 * 3 2 1 7 7 C 1.46902 * 111.00184 * 65.59677 * 6 3 2 8 8 H 1.08999 * 109.46915 * 343.28861 * 7 6 3 9 9 C 1.50704 * 109.47232 * 103.28739 * 7 6 3 10 10 H 1.08001 * 119.99446 * 27.91813 * 9 7 6 11 11 C 1.37872 * 120.00132 * 207.92373 * 9 7 6 12 12 N 1.31512 * 119.99881 * 5.52487 * 11 9 7 13 13 Si 1.86800 * 120.00015 * 185.52867 * 11 9 7 14 14 H 1.48502 * 109.47081 * 89.99843 * 13 11 9 15 15 H 1.48495 * 109.47238 * 209.99648 * 13 11 9 16 16 H 1.48505 * 109.46819 * 329.99850 * 13 11 9 17 17 C 1.50697 * 109.47352 * 223.28814 * 7 6 3 18 18 C 1.38237 * 120.00370 * 318.78221 * 17 7 6 19 19 C 1.38227 * 120.00142 * 179.80862 * 18 17 7 20 20 C 1.38230 * 119.99999 * 0.39727 * 19 18 17 21 21 C 1.38237 * 120.00300 * 359.85794 * 20 19 18 22 22 C 1.38233 * 119.99850 * 359.95378 * 21 20 19 23 23 H 1.09000 * 109.47191 * 64.45478 * 1 2 3 24 24 H 1.09002 * 109.47504 * 184.45000 * 1 2 3 25 25 H 1.08998 * 109.47600 * 304.45630 * 1 2 3 26 26 H 1.08998 * 109.47164 * 239.99518 * 2 1 3 27 27 H 1.09006 * 109.46884 * 119.99611 * 2 1 3 28 28 H 1.08999 * 109.46875 * 305.20179 * 3 2 1 29 29 H 1.09003 * 109.47316 * 294.99613 * 4 3 2 30 30 H 1.08996 * 109.47781 * 54.99841 * 4 3 2 31 31 H 1.09003 * 109.46764 * 299.99782 * 5 4 3 32 32 H 1.09001 * 109.47023 * 59.99753 * 5 4 3 33 33 H 1.09001 * 109.46520 * 179.97438 * 5 4 3 34 34 H 1.00893 * 111.00082 * 189.55317 * 6 3 2 35 35 H 0.97008 * 119.99520 * 179.97438 * 12 11 9 36 36 H 1.08002 * 119.99066 * 0.02562 * 18 17 7 37 37 H 1.08001 * 119.99763 * 180.22771 * 19 18 17 38 38 H 1.08012 * 119.99755 * 179.83265 * 20 19 18 39 39 H 1.08002 * 119.99885 * 179.97438 * 21 20 19 40 40 H 1.07992 * 119.99947 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5644 1.4444 -0.1309 5 6 4.0637 2.8853 -0.2563 6 7 1.6556 2.0978 1.2573 7 6 2.3341 1.4775 2.4031 8 1 2.7277 0.5045 2.1091 9 6 3.4674 2.3621 2.8550 10 1 3.4168 3.4289 2.6942 11 6 4.5688 1.8096 3.4736 12 7 4.6811 0.5030 3.5722 13 14 5.9014 2.9169 4.1717 14 1 5.5825 3.2452 5.5844 15 1 7.2096 2.2170 4.1094 16 1 5.9716 4.1690 3.3762 17 6 1.3528 1.3018 3.5331 18 6 0.4429 2.3021 3.8204 19 6 -0.4598 2.1392 4.8544 20 6 -0.4474 0.9794 5.6065 21 6 0.4659 -0.0187 5.3227 22 6 1.3661 0.1425 4.2861 23 1 -0.3633 0.4431 -0.9272 24 1 -0.3634 -1.0246 0.0797 25 1 -0.3634 0.5814 0.8473 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 1.6025 1.9825 -0.8397 29 1 4.0055 0.9826 0.7524 30 1 3.8536 0.8812 -1.0181 31 1 3.6225 3.3471 -1.1396 32 1 3.7744 3.4485 0.6310 33 1 5.1497 2.8866 -0.3491 34 1 1.8416 3.0888 1.2201 35 1 5.4562 0.1143 4.0071 36 1 0.4352 3.2094 3.2346 37 1 -1.1731 2.9192 5.0765 38 1 -1.1511 0.8533 6.4162 39 1 0.4758 -0.9247 5.9106 40 1 2.0793 -0.6374 4.0642 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055014876.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:23 Heat of formation + Delta-G solvation = -5.573567 kcal Electronic energy + Delta-G solvation = -18937.870427 eV Core-core repulsion = 16330.063303 eV Total energy + Delta-G solvation = -2607.807124 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.13017 -38.62756 -35.07677 -33.12621 -32.76860 -31.42999 -30.64804 -28.17081 -26.38621 -24.70825 -23.01733 -22.66405 -21.93086 -19.97862 -18.79898 -17.64113 -16.66919 -16.60994 -15.65724 -15.53665 -15.23435 -14.75859 -14.61485 -14.10529 -13.93906 -13.85560 -13.52052 -13.39475 -13.14704 -13.06687 -12.83998 -12.59646 -12.27837 -12.11572 -11.99333 -11.69227 -11.60954 -11.59627 -11.38846 -11.17865 -10.81367 -10.49670 -9.47732 -9.15561 -8.87006 -8.05066 -6.15764 0.85336 0.93243 1.36354 1.40631 1.45538 2.41641 3.17994 3.36677 3.81579 4.06777 4.35178 4.36416 4.37833 4.45442 4.53472 4.56764 4.73238 4.78485 4.83135 4.94433 5.01259 5.04139 5.12396 5.19460 5.24381 5.31764 5.37936 5.47682 5.56710 5.57330 5.59729 5.64956 5.74792 5.78894 5.89344 6.02742 6.16842 6.28571 6.47762 6.59088 7.01411 7.12203 7.50374 8.95339 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.014072 B = 0.012290 C = 0.007782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1989.246123 B = 2277.698740 C = 3597.156939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.112 4.112 3 C 0.099 3.901 4 C -0.150 4.150 5 C -0.138 4.138 6 N -0.674 5.674 7 C 0.241 3.759 8 H 0.044 0.956 9 C -0.517 4.517 10 H 0.053 0.947 11 C 0.034 3.966 12 N -0.906 5.906 13 Si 0.928 3.072 14 H -0.286 1.286 15 H -0.290 1.290 16 H -0.267 1.267 17 C -0.032 4.032 18 C -0.120 4.120 19 C -0.133 4.133 20 C -0.152 4.152 21 C -0.137 4.137 22 C -0.138 4.138 23 H 0.061 0.939 24 H 0.046 0.954 25 H 0.049 0.951 26 H 0.066 0.934 27 H 0.033 0.967 28 H 0.082 0.918 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.060 0.940 32 H 0.053 0.947 33 H 0.036 0.964 34 H 0.331 0.669 35 H 0.258 0.742 36 H 0.115 0.885 37 H 0.136 0.864 38 H 0.139 0.861 39 H 0.124 0.876 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.222 1.380 -3.746 8.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.150 4.150 3 C -0.011 4.011 4 C -0.190 4.190 5 C -0.195 4.195 6 N -0.303 5.303 7 C 0.132 3.868 8 H 0.062 0.938 9 C -0.556 4.556 10 H 0.072 0.928 11 C -0.167 4.167 12 N -0.544 5.544 13 Si 0.756 3.244 14 H -0.212 1.212 15 H -0.216 1.216 16 H -0.191 1.191 17 C -0.034 4.034 18 C -0.138 4.138 19 C -0.151 4.151 20 C -0.170 4.170 21 C -0.155 4.155 22 C -0.157 4.157 23 H 0.080 0.920 24 H 0.065 0.935 25 H 0.068 0.932 26 H 0.084 0.916 27 H 0.052 0.948 28 H 0.100 0.900 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.055 0.945 34 H 0.148 0.852 35 H 0.067 0.933 36 H 0.133 0.867 37 H 0.154 0.846 38 H 0.156 0.844 39 H 0.142 0.858 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.680 0.870 -3.628 8.538 hybrid contribution 2.321 0.571 0.635 2.473 sum -5.359 1.441 -2.993 6.305 Atomic orbital electron populations 1.21536 0.94781 1.00606 1.01860 1.21545 0.97006 0.96100 1.00365 1.21490 0.92086 0.95034 0.92512 1.22159 0.98256 0.97627 1.00913 1.21654 0.99663 0.96810 1.01361 1.60822 1.60377 1.06904 1.02204 1.18073 0.87305 0.95811 0.85563 0.93794 1.21687 1.01971 0.93421 1.38561 0.92845 1.25402 0.99465 0.95568 0.96261 1.69998 1.30039 1.10624 1.43778 0.86015 0.79531 0.79961 0.78901 1.21232 1.21583 1.19143 1.20581 0.93533 0.92118 0.97136 1.20965 0.96012 0.98904 0.97933 1.21341 0.99482 0.98249 0.96020 1.21179 1.00263 0.94324 1.01208 1.21236 0.96515 0.99905 0.97804 1.21031 0.98759 0.98303 0.97625 0.92030 0.93519 0.93228 0.91586 0.94797 0.90008 0.92961 0.92904 0.92141 0.92808 0.94461 0.85186 0.93262 0.86727 0.84584 0.84366 0.85775 0.89031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.98 9.85 71.98 0.71 -3.27 16 2 C -0.11 -3.84 5.31 30.59 0.16 -3.68 16 3 C 0.10 3.45 2.50 44.92 0.11 3.56 16 4 C -0.15 -5.62 4.87 30.60 0.15 -5.48 16 5 C -0.14 -4.78 9.45 71.99 0.68 -4.10 16 6 N -0.67 -26.05 4.85 -477.17 -2.31 -28.37 16 7 C 0.24 11.05 1.33 43.42 0.06 11.11 16 8 H 0.04 2.30 4.11 -2.39 -0.01 2.29 16 9 C -0.52 -25.79 5.69 25.60 0.15 -25.64 16 10 H 0.05 2.66 6.94 -2.91 -0.02 2.64 16 11 C 0.03 1.78 5.45 84.65 0.46 2.24 16 12 N -0.91 -49.86 12.87 21.44 0.28 -49.58 16 13 Si 0.93 42.69 29.54 68.60 2.03 44.72 16 14 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 15 H -0.29 -13.34 7.11 99.48 0.71 -12.64 16 16 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 17 C -0.03 -1.46 4.94 -19.86 -0.10 -1.56 16 18 C -0.12 -4.81 9.31 22.27 0.21 -4.60 16 19 C -0.13 -4.60 10.05 22.27 0.22 -4.37 16 20 C -0.15 -5.10 10.05 22.27 0.22 -4.88 16 21 C -0.14 -5.19 10.05 22.27 0.22 -4.96 16 22 C -0.14 -6.26 9.67 22.27 0.22 -6.04 16 23 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 24 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.05 1.71 7.64 -2.39 -0.02 1.69 16 26 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 27 H 0.03 1.39 6.29 -2.38 -0.01 1.37 16 28 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 29 H 0.05 2.44 5.80 -2.39 -0.01 2.43 16 30 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.05 2.05 5.03 -2.39 -0.01 2.04 16 33 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.33 12.61 6.91 -89.70 -0.62 11.99 16 35 H 0.26 13.88 8.31 -92.70 -0.77 13.11 16 36 H 0.11 4.41 7.76 -2.91 -0.02 4.38 16 37 H 0.14 3.75 8.06 -2.91 -0.02 3.73 16 38 H 0.14 3.63 8.06 -2.90 -0.02 3.60 16 39 H 0.12 4.06 8.06 -2.91 -0.02 4.04 16 40 H 0.09 4.53 8.03 -2.91 -0.02 4.50 16 Total: -1.00 -55.22 315.08 3.85 -51.37 By element: Atomic # 1 Polarization: 33.13 SS G_CDS: 0.39 Total: 33.52 kcal Atomic # 6 Polarization: -55.14 SS G_CDS: 3.47 Total: -51.66 kcal Atomic # 7 Polarization: -75.91 SS G_CDS: -2.04 Total: -77.95 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Total: -55.22 3.85 -51.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055014876.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.796 kcal (2) G-P(sol) polarization free energy of solvation -55.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds