Wall clock time and date at job start Mon Mar 30 2020 05:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46995 * 2 1 4 4 C 1.52994 * 109.47122 * 175.00265 * 3 2 1 5 5 C 1.53007 * 109.46745 * 293.78522 * 4 3 2 6 6 N 1.46902 * 109.47085 * 295.00026 * 3 2 1 7 7 C 1.46899 * 111.00010 * 154.42067 * 6 3 2 8 8 H 1.08997 * 109.47251 * 36.51511 * 7 6 3 9 9 C 1.50702 * 109.47120 * 276.51386 * 7 6 3 10 10 H 1.08002 * 119.99668 * 124.86598 * 9 7 6 11 11 C 1.37878 * 120.00123 * 304.87515 * 9 7 6 12 12 N 1.31513 * 120.00247 * 8.45630 * 11 9 7 13 13 Si 1.86805 * 119.99958 * 188.46920 * 11 9 7 14 14 H 1.48506 * 109.47038 * 359.97438 * 13 11 9 15 15 H 1.48496 * 109.47277 * 119.99415 * 13 11 9 16 16 H 1.48495 * 109.46868 * 239.99696 * 13 11 9 17 17 C 1.50698 * 109.47177 * 156.51615 * 7 6 3 18 18 C 1.38235 * 120.00128 * 32.37328 * 17 7 6 19 19 C 1.38234 * 120.00111 * 180.02562 * 18 17 7 20 20 C 1.38235 * 120.00139 * 359.95128 * 19 18 17 21 21 C 1.38233 * 119.99531 * 0.02562 * 20 19 18 22 22 C 1.38234 * 120.00503 * 0.06425 * 21 20 19 23 23 H 1.09006 * 109.47311 * 299.99728 * 1 2 3 24 24 H 1.08996 * 109.47237 * 59.99743 * 1 2 3 25 25 H 1.09000 * 109.47203 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.46921 * 240.00003 * 2 1 3 27 27 H 1.08997 * 109.47090 * 119.99485 * 2 1 3 28 28 H 1.09002 * 109.47036 * 55.00196 * 3 2 1 29 29 H 1.08996 * 109.47224 * 53.78227 * 4 3 2 30 30 H 1.08998 * 109.47180 * 173.78954 * 4 3 2 31 31 H 1.09007 * 109.46700 * 185.98127 * 5 4 3 32 32 H 1.08992 * 109.47257 * 305.97740 * 5 4 3 33 33 H 1.08997 * 109.47210 * 65.98113 * 5 4 3 34 34 H 1.00899 * 110.99856 * 278.37265 * 6 3 2 35 35 H 0.96997 * 120.00393 * 180.02562 * 12 11 9 36 36 H 1.08003 * 119.99591 * 359.97309 * 18 17 7 37 37 H 1.08000 * 119.99746 * 179.97438 * 19 18 17 38 38 H 1.07995 * 120.00132 * 179.71908 * 20 19 18 39 39 H 1.08010 * 119.99745 * 179.97438 * 21 20 19 40 40 H 1.08000 * 119.99921 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5648 1.4444 0.1257 5 6 3.9639 0.9018 1.4995 6 7 1.6514 2.0993 -1.2552 7 6 1.5591 3.5550 -1.0811 8 1 2.3398 3.8894 -0.3979 9 6 0.2089 3.9084 -0.5127 10 1 0.1405 4.4855 0.3976 11 6 -0.9391 3.4948 -1.1547 12 7 -0.8619 2.6560 -2.1646 13 14 -2.6041 4.1262 -0.5902 14 1 -2.4197 5.0513 0.5568 15 1 -3.2646 4.8479 -1.7074 16 1 -3.4514 2.9812 -0.1709 17 6 1.7354 4.2327 -2.4156 18 6 1.2925 3.6132 -3.5692 19 6 1.4547 4.2346 -4.7933 20 6 2.0587 5.4760 -4.8637 21 6 2.5012 6.0956 -3.7100 22 6 2.3407 5.4734 -2.4860 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5137 0.8900 28 1 1.6054 1.9815 0.8419 29 1 3.9943 0.8138 -0.6528 30 1 3.9372 2.4628 0.0151 31 1 5.0414 1.0016 1.6305 32 1 3.4496 1.4668 2.2767 33 1 3.6852 -0.1496 1.5698 34 1 2.2907 1.8639 -1.9995 35 1 -1.6694 2.3653 -2.6165 36 1 0.8206 2.6433 -3.5142 37 1 1.1090 3.7504 -5.6947 38 1 2.1895 5.9594 -5.8205 39 1 2.9735 7.0654 -3.7650 40 1 2.6868 5.9575 -1.5847 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055014878.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:26 Heat of formation + Delta-G solvation = 16.552462 kcal Electronic energy + Delta-G solvation = -18784.090148 eV Core-core repulsion = 16177.242481 eV Total energy + Delta-G solvation = -2606.847667 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.40813 -36.82475 -33.67733 -31.32324 -30.97096 -29.86952 -29.18428 -26.38879 -24.40241 -22.36438 -21.97211 -21.37291 -19.87216 -19.36038 -16.26514 -15.77931 -14.81899 -14.45717 -14.43829 -13.83616 -13.79204 -13.33659 -13.11500 -12.73690 -12.38674 -12.27249 -11.84664 -11.59338 -11.50341 -11.30827 -11.08309 -10.84682 -10.70266 -10.62914 -10.34965 -10.19886 -10.01659 -9.79628 -9.59447 -9.49680 -9.20049 -8.42189 -7.85093 -7.46511 -6.73764 -5.80199 -3.98137 2.44017 2.54103 3.32747 3.41581 3.44925 4.48574 4.92921 5.28254 5.42167 5.46911 5.54409 5.77428 5.80466 5.90743 5.98159 6.02233 6.10316 6.22001 6.33418 6.37317 6.41141 6.47478 6.56775 6.63026 6.71863 6.78551 6.86221 6.89348 7.05263 7.08920 7.19077 7.26410 7.46413 7.62064 7.68146 7.91601 7.96428 8.20625 8.26775 8.53272 8.90316 9.15069 9.68008 11.12669 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.015097 B = 0.010642 C = 0.007472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.167407 B = 2630.560643 C = 3746.526695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.099 4.099 3 C 0.097 3.903 4 C -0.156 4.156 5 C -0.145 4.145 6 N -0.633 5.633 7 C 0.251 3.749 8 H -0.002 1.002 9 C -0.517 4.517 10 H 0.051 0.949 11 C 0.095 3.905 12 N -0.826 5.826 13 Si 0.871 3.129 14 H -0.276 1.276 15 H -0.286 1.286 16 H -0.285 1.285 17 C -0.040 4.040 18 C -0.076 4.076 19 C -0.144 4.144 20 C -0.153 4.153 21 C -0.142 4.142 22 C -0.134 4.134 23 H 0.038 0.962 24 H 0.099 0.901 25 H 0.021 0.979 26 H 0.047 0.953 27 H 0.041 0.959 28 H 0.075 0.925 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.041 0.959 32 H 0.051 0.949 33 H 0.052 0.948 34 H 0.305 0.695 35 H 0.252 0.748 36 H 0.161 0.839 37 H 0.102 0.898 38 H 0.099 0.901 39 H 0.101 0.899 40 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.122 -2.015 0.135 6.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.137 4.137 3 C -0.014 4.014 4 C -0.196 4.196 5 C -0.203 4.203 6 N -0.261 5.261 7 C 0.143 3.857 8 H 0.015 0.985 9 C -0.555 4.555 10 H 0.070 0.930 11 C -0.112 4.112 12 N -0.459 5.459 13 Si 0.699 3.301 14 H -0.201 1.201 15 H -0.212 1.212 16 H -0.211 1.211 17 C -0.042 4.042 18 C -0.095 4.095 19 C -0.163 4.163 20 C -0.171 4.171 21 C -0.160 4.160 22 C -0.153 4.153 23 H 0.057 0.943 24 H 0.117 0.883 25 H 0.040 0.960 26 H 0.066 0.934 27 H 0.059 0.941 28 H 0.093 0.907 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.122 0.878 35 H 0.062 0.938 36 H 0.178 0.822 37 H 0.120 0.880 38 H 0.117 0.883 39 H 0.119 0.881 40 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 5.310 -2.221 0.092 5.756 hybrid contribution -0.156 0.850 0.294 0.912 sum 5.153 -1.372 0.386 5.347 Atomic orbital electron populations 1.21703 0.95300 0.98601 1.04531 1.21413 0.96953 0.96191 0.99154 1.21490 0.89676 0.94919 0.95329 1.22385 0.99952 1.00366 0.96856 1.21744 0.99842 1.00940 0.97789 1.60891 1.51953 1.09989 1.03266 1.18146 0.95083 0.84188 0.88249 0.98450 1.20845 0.89752 1.35276 1.09641 0.93034 1.24765 0.97818 0.93803 0.94839 1.69975 1.26798 1.28661 1.20512 0.86894 0.85548 0.78905 0.78702 1.20112 1.21223 1.21128 1.20533 0.92672 0.94160 0.96804 1.21764 0.94947 1.02623 0.90135 1.21164 1.01164 0.95836 0.98111 1.20803 1.02599 0.96591 0.97117 1.20785 1.02785 0.99221 0.93219 1.20908 1.01566 0.96316 0.96472 0.94276 0.88251 0.95955 0.93430 0.94079 0.90713 0.92847 0.92745 0.93945 0.92958 0.92867 0.87833 0.93772 0.82218 0.88000 0.88278 0.88096 0.87858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 9.80 37.16 0.36 -2.43 16 2 C -0.10 -1.74 5.49 -26.73 -0.15 -1.89 16 3 C 0.10 1.83 1.85 -67.71 -0.13 1.70 16 4 C -0.16 -2.52 5.36 -26.73 -0.14 -2.66 16 5 C -0.15 -2.02 9.55 37.16 0.35 -1.66 16 6 N -0.63 -13.34 3.56 -102.18 -0.36 -13.71 16 7 C 0.25 5.78 2.29 -70.02 -0.16 5.62 16 8 H 0.00 -0.05 7.07 -51.93 -0.37 -0.42 16 9 C -0.52 -13.34 8.44 -34.44 -0.29 -13.64 16 10 H 0.05 1.37 7.83 -52.49 -0.41 0.96 16 11 C 0.09 2.43 5.20 -17.82 -0.09 2.34 16 12 N -0.83 -20.83 8.30 55.43 0.46 -20.37 16 13 Si 0.87 20.65 29.55 -169.99 -5.02 15.63 16 14 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 15 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 16 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 17 C -0.04 -0.91 4.64 -104.63 -0.49 -1.40 16 18 C -0.08 -1.69 7.62 -39.58 -0.30 -1.99 16 19 C -0.14 -2.89 10.05 -39.58 -0.40 -3.28 16 20 C -0.15 -2.86 10.05 -39.58 -0.40 -3.26 16 21 C -0.14 -2.70 10.05 -39.58 -0.40 -3.09 16 22 C -0.13 -2.80 9.69 -39.58 -0.38 -3.19 16 23 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 24 H 0.10 2.23 6.86 -51.93 -0.36 1.87 16 25 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.04 0.65 6.52 -51.93 -0.34 0.31 16 28 H 0.07 1.59 7.57 -51.93 -0.39 1.19 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.05 0.93 7.39 -51.93 -0.38 0.54 16 31 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.05 0.70 6.79 -51.93 -0.35 0.34 16 34 H 0.30 6.27 7.49 -39.29 -0.29 5.97 16 35 H 0.25 6.28 8.31 -40.82 -0.34 5.94 16 36 H 0.16 3.76 5.60 -52.48 -0.29 3.46 16 37 H 0.10 1.82 8.06 -52.49 -0.42 1.39 16 38 H 0.10 1.58 8.06 -52.49 -0.42 1.16 16 39 H 0.10 1.64 8.06 -52.48 -0.42 1.21 16 40 H 0.10 2.03 8.06 -52.49 -0.42 1.61 16 LS Contribution 315.31 15.07 4.75 4.75 Total: -1.00 -25.18 315.31 -9.33 -34.51 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -6.55 Total: 8.00 kcal Atomic # 6 Polarization: -26.22 SS G_CDS: -2.60 Total: -28.82 kcal Atomic # 7 Polarization: -34.17 SS G_CDS: 0.10 Total: -34.08 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -25.18 -9.33 -34.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055014878.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.066 kcal (2) G-P(sol) polarization free energy of solvation -25.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds