Wall clock time and date at job start Mon Mar 30 2020 05:57:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46995 * 2 1 4 4 C 1.52994 * 109.47122 * 175.00265 * 3 2 1 5 5 C 1.53007 * 109.46745 * 293.78522 * 4 3 2 6 6 N 1.46902 * 109.47085 * 295.00026 * 3 2 1 7 7 C 1.46899 * 111.00010 * 154.42067 * 6 3 2 8 8 H 1.08997 * 109.47251 * 36.51511 * 7 6 3 9 9 C 1.50702 * 109.47120 * 276.51386 * 7 6 3 10 10 H 1.08002 * 119.99668 * 124.86598 * 9 7 6 11 11 C 1.37878 * 120.00123 * 304.87515 * 9 7 6 12 12 N 1.31513 * 120.00247 * 8.45630 * 11 9 7 13 13 Si 1.86805 * 119.99958 * 188.46920 * 11 9 7 14 14 H 1.48506 * 109.47038 * 359.97438 * 13 11 9 15 15 H 1.48496 * 109.47277 * 119.99415 * 13 11 9 16 16 H 1.48495 * 109.46868 * 239.99696 * 13 11 9 17 17 C 1.50698 * 109.47177 * 156.51615 * 7 6 3 18 18 C 1.38235 * 120.00128 * 32.37328 * 17 7 6 19 19 C 1.38234 * 120.00111 * 180.02562 * 18 17 7 20 20 C 1.38235 * 120.00139 * 359.95128 * 19 18 17 21 21 C 1.38233 * 119.99531 * 0.02562 * 20 19 18 22 22 C 1.38234 * 120.00503 * 0.06425 * 21 20 19 23 23 H 1.09006 * 109.47311 * 299.99728 * 1 2 3 24 24 H 1.08996 * 109.47237 * 59.99743 * 1 2 3 25 25 H 1.09000 * 109.47203 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.46921 * 240.00003 * 2 1 3 27 27 H 1.08997 * 109.47090 * 119.99485 * 2 1 3 28 28 H 1.09002 * 109.47036 * 55.00196 * 3 2 1 29 29 H 1.08996 * 109.47224 * 53.78227 * 4 3 2 30 30 H 1.08998 * 109.47180 * 173.78954 * 4 3 2 31 31 H 1.09007 * 109.46700 * 185.98127 * 5 4 3 32 32 H 1.08992 * 109.47257 * 305.97740 * 5 4 3 33 33 H 1.08997 * 109.47210 * 65.98113 * 5 4 3 34 34 H 1.00899 * 110.99856 * 278.37265 * 6 3 2 35 35 H 0.96997 * 120.00393 * 180.02562 * 12 11 9 36 36 H 1.08003 * 119.99591 * 359.97309 * 18 17 7 37 37 H 1.08000 * 119.99746 * 179.97438 * 19 18 17 38 38 H 1.07995 * 120.00132 * 179.71908 * 20 19 18 39 39 H 1.08010 * 119.99745 * 179.97438 * 21 20 19 40 40 H 1.08000 * 119.99921 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5648 1.4444 0.1257 5 6 3.9639 0.9018 1.4995 6 7 1.6514 2.0993 -1.2552 7 6 1.5591 3.5550 -1.0811 8 1 2.3398 3.8894 -0.3979 9 6 0.2089 3.9084 -0.5127 10 1 0.1405 4.4855 0.3976 11 6 -0.9391 3.4948 -1.1547 12 7 -0.8619 2.6560 -2.1646 13 14 -2.6041 4.1262 -0.5902 14 1 -2.4197 5.0513 0.5568 15 1 -3.2646 4.8479 -1.7074 16 1 -3.4514 2.9812 -0.1709 17 6 1.7354 4.2327 -2.4156 18 6 1.2925 3.6132 -3.5692 19 6 1.4547 4.2346 -4.7933 20 6 2.0587 5.4760 -4.8637 21 6 2.5012 6.0956 -3.7100 22 6 2.3407 5.4734 -2.4860 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5137 0.8900 28 1 1.6054 1.9815 0.8419 29 1 3.9943 0.8138 -0.6528 30 1 3.9372 2.4628 0.0151 31 1 5.0414 1.0016 1.6305 32 1 3.4496 1.4668 2.2767 33 1 3.6852 -0.1496 1.5698 34 1 2.2907 1.8639 -1.9995 35 1 -1.6694 2.3653 -2.6165 36 1 0.8206 2.6433 -3.5142 37 1 1.1090 3.7504 -5.6947 38 1 2.1895 5.9594 -5.8205 39 1 2.9735 7.0654 -3.7650 40 1 2.6868 5.9575 -1.5847 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055014878.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:25 Heat of formation + Delta-G solvation = 5.834769 kcal Electronic energy + Delta-G solvation = -18784.554902 eV Core-core repulsion = 16177.242481 eV Total energy + Delta-G solvation = -2607.312422 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.02151 -38.34442 -35.38019 -33.15288 -32.34780 -31.44801 -30.74993 -28.18943 -25.97037 -24.04825 -23.37975 -22.93144 -21.56888 -20.86519 -18.12699 -17.37617 -16.70032 -16.04126 -15.94965 -15.42974 -15.25131 -14.83080 -14.61069 -14.42518 -14.02413 -13.79506 -13.49638 -13.21159 -12.95442 -12.82556 -12.68535 -12.59690 -12.41665 -12.12301 -12.00766 -11.75523 -11.65782 -11.37428 -11.23355 -11.04574 -10.97640 -10.37732 -9.44022 -9.11346 -8.42449 -7.73149 -5.97954 0.84145 0.96583 1.39660 1.45529 1.50911 2.52325 3.28534 3.40463 3.87759 4.07134 4.24289 4.35516 4.38393 4.48069 4.55131 4.60753 4.71310 4.73022 4.83759 4.96219 5.03247 5.06802 5.09310 5.13995 5.21793 5.27357 5.31885 5.38821 5.49666 5.56133 5.65737 5.69211 5.84257 5.89189 6.00496 6.06907 6.29441 6.41088 6.57580 6.71032 7.14325 7.37087 7.68615 9.13769 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.015097 B = 0.010642 C = 0.007472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.167407 B = 2630.560643 C = 3746.526695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.092 4.092 3 C 0.097 3.903 4 C -0.147 4.147 5 C -0.140 4.140 6 N -0.637 5.637 7 C 0.258 3.742 8 H -0.017 1.017 9 C -0.539 4.539 10 H 0.029 0.971 11 C 0.070 3.930 12 N -0.825 5.825 13 Si 0.911 3.089 14 H -0.283 1.283 15 H -0.288 1.288 16 H -0.283 1.283 17 C -0.062 4.062 18 C -0.091 4.091 19 C -0.150 4.150 20 C -0.147 4.147 21 C -0.138 4.138 22 C -0.151 4.151 23 H 0.023 0.977 24 H 0.067 0.933 25 H 0.043 0.957 26 H 0.054 0.946 27 H 0.066 0.934 28 H 0.044 0.956 29 H 0.064 0.936 30 H 0.039 0.961 31 H 0.060 0.940 32 H 0.044 0.956 33 H 0.065 0.935 34 H 0.307 0.693 35 H 0.250 0.750 36 H 0.142 0.858 37 H 0.122 0.878 38 H 0.135 0.865 39 H 0.134 0.866 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.085 -2.150 -0.843 7.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.129 4.129 3 C -0.014 4.014 4 C -0.187 4.187 5 C -0.198 4.198 6 N -0.265 5.265 7 C 0.150 3.850 8 H 0.001 0.999 9 C -0.577 4.577 10 H 0.048 0.952 11 C -0.137 4.137 12 N -0.458 5.458 13 Si 0.739 3.261 14 H -0.208 1.208 15 H -0.214 1.214 16 H -0.209 1.209 17 C -0.063 4.063 18 C -0.110 4.110 19 C -0.168 4.168 20 C -0.165 4.165 21 C -0.156 4.156 22 C -0.169 4.169 23 H 0.042 0.958 24 H 0.086 0.914 25 H 0.062 0.938 26 H 0.073 0.927 27 H 0.084 0.916 28 H 0.062 0.938 29 H 0.083 0.917 30 H 0.058 0.942 31 H 0.079 0.921 32 H 0.064 0.936 33 H 0.084 0.916 34 H 0.124 0.876 35 H 0.059 0.941 36 H 0.159 0.841 37 H 0.140 0.860 38 H 0.153 0.847 39 H 0.152 0.848 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 6.278 -2.366 -0.884 6.767 hybrid contribution -0.425 0.916 0.572 1.160 sum 5.853 -1.450 -0.312 6.038 Atomic orbital electron populations 1.21612 0.96701 0.99224 1.02165 1.21364 0.95586 0.95382 1.00618 1.21475 0.91587 0.95098 0.93196 1.22238 0.97573 0.99982 0.98865 1.21703 1.01004 1.01326 0.95792 1.60737 1.52502 1.08940 1.04347 1.17945 0.93199 0.85318 0.88570 0.99944 1.20927 0.91601 1.35741 1.09424 0.95235 1.25085 0.99235 0.94141 0.95209 1.70074 1.26751 1.28504 1.20465 0.86286 0.83545 0.78289 0.77948 1.20818 1.21407 1.20945 1.20529 0.94257 0.95069 0.96492 1.21613 0.95934 1.02303 0.91125 1.21430 1.00948 0.96530 0.97926 1.21213 1.00845 0.95851 0.98618 1.21162 1.01845 1.00279 0.92357 1.21108 1.01947 0.96051 0.97826 0.95765 0.91389 0.93822 0.92712 0.91597 0.93768 0.91737 0.94217 0.92065 0.93642 0.91605 0.87602 0.94053 0.84098 0.85973 0.84672 0.84838 0.87565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.40 9.80 71.98 0.71 -4.69 16 2 C -0.09 -3.13 5.49 30.60 0.17 -2.96 16 3 C 0.10 3.70 1.85 44.91 0.08 3.78 16 4 C -0.15 -4.65 5.36 30.59 0.16 -4.49 16 5 C -0.14 -3.65 9.55 71.98 0.69 -2.96 16 6 N -0.64 -27.53 3.56 -477.19 -1.70 -29.23 16 7 C 0.26 12.31 2.29 43.42 0.10 12.41 16 8 H -0.02 -0.83 7.07 -2.39 -0.02 -0.85 16 9 C -0.54 -28.86 8.44 25.60 0.22 -28.64 16 10 H 0.03 1.65 7.83 -2.91 -0.02 1.63 16 11 C 0.07 3.67 5.20 84.66 0.44 4.11 16 12 N -0.82 -42.36 8.30 21.45 0.18 -42.18 16 13 Si 0.91 43.11 29.55 68.60 2.03 45.14 16 14 H -0.28 -13.58 7.11 99.48 0.71 -12.88 16 15 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 16 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 17 C -0.06 -2.84 4.64 -19.87 -0.09 -2.93 16 18 C -0.09 -4.03 7.62 22.27 0.17 -3.86 16 19 C -0.15 -5.72 10.05 22.27 0.22 -5.50 16 20 C -0.15 -5.04 10.05 22.27 0.22 -4.82 16 21 C -0.14 -4.90 10.05 22.27 0.22 -4.68 16 22 C -0.15 -6.23 9.69 22.27 0.22 -6.01 16 23 H 0.02 0.96 8.14 -2.38 -0.02 0.94 16 24 H 0.07 3.09 6.86 -2.39 -0.02 3.07 16 25 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.07 1.94 6.52 -2.39 -0.02 1.92 16 28 H 0.04 1.95 7.57 -2.39 -0.02 1.93 16 29 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.04 1.36 7.39 -2.39 -0.02 1.34 16 31 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 32 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.06 1.55 6.79 -2.39 -0.02 1.53 16 34 H 0.31 12.87 7.49 -89.69 -0.67 12.20 16 35 H 0.25 12.60 8.31 -92.71 -0.77 11.83 16 36 H 0.14 6.74 5.60 -2.91 -0.02 6.72 16 37 H 0.12 4.07 8.06 -2.91 -0.02 4.05 16 38 H 0.14 3.66 8.06 -2.91 -0.02 3.63 16 39 H 0.13 3.81 8.06 -2.91 -0.02 3.79 16 40 H 0.11 4.20 8.06 -2.91 -0.02 4.18 16 Total: -1.00 -54.64 315.31 4.36 -50.27 By element: Atomic # 1 Polarization: 26.91 SS G_CDS: 0.33 Total: 27.24 kcal Atomic # 6 Polarization: -54.78 SS G_CDS: 3.53 Total: -51.25 kcal Atomic # 7 Polarization: -69.89 SS G_CDS: -1.52 Total: -71.41 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -54.64 4.36 -50.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055014878.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.109 kcal (2) G-P(sol) polarization free energy of solvation -54.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds