Wall clock time and date at job start Mon Mar 30 2020 05:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47223 * 2 1 4 4 C 1.53007 * 109.47309 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.47034 * 179.97438 * 4 3 2 6 6 N 1.46903 * 109.46756 * 179.97438 * 5 4 3 7 7 C 1.46897 * 110.99701 * 180.02562 * 6 5 4 8 8 H 1.09007 * 109.47127 * 324.99583 * 7 6 5 9 9 C 1.50696 * 109.47661 * 84.99930 * 7 6 5 10 10 H 1.07992 * 120.00327 * 234.80216 * 9 7 6 11 11 C 1.37880 * 119.99741 * 54.79229 * 9 7 6 12 12 N 1.31520 * 120.00156 * 2.53118 * 11 9 7 13 13 Si 1.86802 * 120.00014 * 182.52785 * 11 9 7 14 14 H 1.48497 * 109.47159 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47179 * 120.00359 * 13 11 9 16 16 H 1.48503 * 109.46817 * 240.00337 * 13 11 9 17 17 C 1.50700 * 109.46942 * 205.00344 * 7 6 5 18 18 C 1.38237 * 119.99923 * 330.49637 * 17 7 6 19 19 C 1.38230 * 120.00034 * 180.02562 * 18 17 7 20 20 C 1.38230 * 120.00382 * 359.96129 * 19 18 17 21 21 C 1.38240 * 119.99864 * 359.97438 * 20 19 18 22 22 C 1.38234 * 120.00155 * 150.48344 * 17 7 6 23 23 H 1.08995 * 109.46978 * 299.99954 * 1 2 3 24 24 H 1.08996 * 109.47323 * 59.99731 * 1 2 3 25 25 H 1.09001 * 109.46967 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.46925 * 240.00266 * 2 1 3 27 27 H 1.08996 * 109.47323 * 120.00269 * 2 1 3 28 28 H 1.08995 * 109.47106 * 60.00124 * 3 2 1 29 29 H 1.09000 * 109.47390 * 299.99871 * 3 2 1 30 30 H 1.09002 * 109.46767 * 59.99842 * 4 3 2 31 31 H 1.09000 * 109.46595 * 300.00120 * 4 3 2 32 32 H 1.09001 * 109.46758 * 59.99889 * 5 4 3 33 33 H 1.09001 * 109.46981 * 299.99987 * 5 4 3 34 34 H 1.00896 * 111.00051 * 303.95373 * 6 5 4 35 35 H 0.96999 * 119.99883 * 179.97438 * 12 11 9 36 36 H 1.08002 * 119.99728 * 359.97438 * 18 17 7 37 37 H 1.08004 * 120.00107 * 179.97438 * 19 18 17 38 38 H 1.07995 * 120.00370 * 179.72251 * 20 19 18 39 39 H 1.07994 * 120.00362 * 179.97438 * 21 20 19 40 40 H 1.07992 * 120.00262 * 359.97438 * 22 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 6 4.0800 2.8850 -0.0013 6 7 5.5491 2.8850 -0.0013 7 6 6.0755 4.2564 -0.0013 8 1 5.4198 4.8973 -0.5908 9 6 6.1399 4.7698 1.4140 10 1 5.6490 5.6955 1.6755 11 6 6.8255 4.0576 2.3752 12 7 7.4650 2.9564 2.0464 13 14 6.8463 4.6569 4.1443 14 1 6.0574 5.9105 4.2516 15 1 6.2513 3.6200 5.0252 16 1 8.2473 4.9171 4.5623 17 6 7.4576 4.2639 -0.6018 18 6 8.2660 3.1481 -0.4897 19 6 9.5340 3.1551 -1.0401 20 6 9.9934 4.2776 -1.7033 21 6 9.1846 5.3929 -1.8166 22 6 7.9170 5.3864 -1.2650 23 1 -0.3633 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5138 0.8899 28 1 1.6767 1.9563 0.8899 29 1 1.6767 1.9563 -0.8900 30 1 3.9330 0.9287 -0.8909 31 1 3.9337 0.9285 0.8891 32 1 3.7170 3.3991 0.8887 33 1 3.7163 3.3986 -0.8913 34 1 5.9106 2.3592 0.7803 35 1 7.9476 2.4556 2.7225 36 1 7.9071 2.2712 0.0286 37 1 10.1657 2.2836 -0.9522 38 1 10.9857 4.2847 -2.1294 39 1 9.5436 6.2700 -2.3344 40 1 7.2853 6.2578 -1.3532 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055014942.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:28 Heat of formation + Delta-G solvation = 0.431266 kcal Electronic energy + Delta-G solvation = -17863.716791 eV Core-core repulsion = 15256.170056 eV Total energy + Delta-G solvation = -2607.546735 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.19394 -36.31905 -34.88471 -32.34754 -30.83180 -29.70432 -28.98185 -26.50414 -24.50331 -22.51876 -21.47155 -20.82046 -20.42718 -19.70602 -16.55442 -15.81546 -15.46498 -14.99965 -14.13118 -14.10527 -13.81207 -13.54924 -13.29164 -12.81297 -12.62355 -12.22165 -12.09869 -11.84790 -11.59181 -11.43436 -11.13676 -11.02542 -10.84224 -10.67540 -10.53022 -10.49398 -10.16681 -10.13087 -9.80424 -9.62133 -9.45688 -8.68863 -7.74583 -7.37716 -6.98243 -6.03566 -4.30880 2.57903 2.69443 3.19342 3.28693 3.31982 4.29279 4.93866 5.06111 5.10819 5.14389 5.27503 5.57969 5.63743 5.80824 5.87807 5.92540 5.97678 5.99692 6.05071 6.14598 6.24265 6.32258 6.39246 6.45662 6.53030 6.56576 6.77295 6.80347 6.91814 6.95454 7.00984 7.22097 7.35892 7.59216 7.67313 7.83942 8.01792 8.11238 8.31111 8.45769 8.86504 9.13431 9.41924 10.81013 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.017100 B = 0.006540 C = 0.005240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.015325 B = 4280.628635 C = 5342.719830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.117 4.117 4 C -0.115 4.115 5 C 0.067 3.933 6 N -0.691 5.691 7 C 0.236 3.764 8 H 0.034 0.966 9 C -0.538 4.538 10 H 0.057 0.943 11 C 0.071 3.929 12 N -0.878 5.878 13 Si 0.892 3.108 14 H -0.274 1.274 15 H -0.283 1.283 16 H -0.282 1.282 17 C -0.017 4.017 18 C -0.051 4.051 19 C -0.148 4.148 20 C -0.154 4.154 21 C -0.145 4.145 22 C -0.136 4.136 23 H 0.052 0.948 24 H 0.052 0.948 25 H 0.049 0.951 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.022 0.978 33 H 0.048 0.952 34 H 0.364 0.636 35 H 0.266 0.734 36 H 0.144 0.856 37 H 0.100 0.900 38 H 0.098 0.902 39 H 0.100 0.900 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.365 -3.424 -3.902 7.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.155 4.155 4 C -0.153 4.153 5 C -0.063 4.063 6 N -0.327 5.327 7 C 0.128 3.872 8 H 0.052 0.948 9 C -0.577 4.577 10 H 0.075 0.925 11 C -0.132 4.132 12 N -0.516 5.516 13 Si 0.720 3.280 14 H -0.198 1.198 15 H -0.209 1.209 16 H -0.208 1.208 17 C -0.018 4.018 18 C -0.069 4.069 19 C -0.167 4.167 20 C -0.172 4.172 21 C -0.163 4.163 22 C -0.155 4.155 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.068 0.932 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.041 0.959 33 H 0.066 0.934 34 H 0.189 0.811 35 H 0.076 0.924 36 H 0.162 0.838 37 H 0.118 0.882 38 H 0.116 0.884 39 H 0.118 0.882 40 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -5.207 -3.651 -4.474 7.776 hybrid contribution 0.115 0.764 2.065 2.205 sum -5.092 -2.888 -2.409 6.330 Atomic orbital electron populations 1.21782 0.96438 1.01068 1.01623 1.21537 0.95242 0.97583 1.01846 1.21577 0.96365 0.95959 1.01635 1.21562 0.93749 0.98159 1.01826 1.21699 0.91183 0.94505 0.98916 1.60926 1.04040 1.16043 1.51706 1.18087 0.88528 0.87208 0.93409 0.94793 1.21754 1.33504 1.08722 0.93687 0.92461 1.24998 0.93947 0.95099 0.99112 1.69621 1.32549 1.16137 1.33343 0.86526 0.77950 0.78898 0.84632 1.19845 1.20865 1.20816 1.20191 0.98159 0.92009 0.91477 1.21325 0.91857 0.99973 0.93782 1.21088 0.97375 0.97549 1.00669 1.20753 0.98800 0.94763 1.02897 1.20740 0.95154 0.97696 1.02697 1.20840 0.95964 0.98247 1.00421 0.92928 0.92926 0.93205 0.92197 0.92230 0.92370 0.92363 0.91961 0.92610 0.95942 0.93374 0.81095 0.92383 0.83827 0.88174 0.88388 0.88193 0.87949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.91 37.16 0.37 -1.18 16 2 C -0.12 -1.48 5.93 -26.73 -0.16 -1.64 16 3 C -0.12 -1.61 5.21 -26.73 -0.14 -1.75 16 4 C -0.11 -1.91 5.48 -26.73 -0.15 -2.05 16 5 C 0.07 1.33 5.48 -3.82 -0.02 1.31 16 6 N -0.69 -15.78 5.39 -109.18 -0.59 -16.37 16 7 C 0.24 5.77 2.50 -70.02 -0.18 5.60 16 8 H 0.03 0.82 7.75 -51.92 -0.40 0.42 16 9 C -0.54 -14.09 8.62 -34.44 -0.30 -14.39 16 10 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 11 C 0.07 1.84 5.05 -17.82 -0.09 1.75 16 12 N -0.88 -22.53 7.97 55.43 0.44 -22.09 16 13 Si 0.89 20.56 29.54 -169.99 -5.02 15.54 16 14 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 15 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 16 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 17 C -0.02 -0.41 4.79 -104.62 -0.50 -0.91 16 18 C -0.05 -1.20 7.66 -39.58 -0.30 -1.50 16 19 C -0.15 -3.14 10.05 -39.59 -0.40 -3.54 16 20 C -0.15 -3.04 10.05 -39.58 -0.40 -3.44 16 21 C -0.14 -2.90 10.05 -39.58 -0.40 -3.29 16 22 C -0.14 -3.00 9.70 -39.58 -0.38 -3.39 16 23 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 27 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.02 0.48 8.00 -51.93 -0.42 0.06 16 33 H 0.05 0.92 8.06 -51.93 -0.42 0.50 16 34 H 0.36 8.88 5.52 -39.29 -0.22 8.66 16 35 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 36 H 0.14 3.55 5.59 -52.49 -0.29 3.26 16 37 H 0.10 1.88 8.06 -52.48 -0.42 1.46 16 38 H 0.10 1.65 8.06 -52.49 -0.42 1.22 16 39 H 0.10 1.70 8.06 -52.49 -0.42 1.28 16 40 H 0.10 2.10 8.06 -52.49 -0.42 1.68 16 LS Contribution 321.27 15.07 4.84 4.84 Total: -1.00 -25.98 321.27 -10.16 -36.13 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: -6.79 Total: 10.37 kcal Atomic # 6 Polarization: -25.38 SS G_CDS: -3.04 Total: -28.42 kcal Atomic # 7 Polarization: -38.32 SS G_CDS: -0.15 Total: -38.46 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -25.98 -10.16 -36.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055014942.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.566 kcal (2) G-P(sol) polarization free energy of solvation -25.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds