Wall clock time and date at job start Mon Mar 30 2020 05:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47223 * 2 1 4 4 C 1.53007 * 109.47309 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.47034 * 179.97438 * 4 3 2 6 6 N 1.46903 * 109.46756 * 179.97438 * 5 4 3 7 7 C 1.46897 * 110.99701 * 180.02562 * 6 5 4 8 8 H 1.09007 * 109.47127 * 324.99583 * 7 6 5 9 9 C 1.50696 * 109.47661 * 84.99930 * 7 6 5 10 10 H 1.07992 * 120.00327 * 234.80216 * 9 7 6 11 11 C 1.37880 * 119.99741 * 54.79229 * 9 7 6 12 12 N 1.31520 * 120.00156 * 2.53118 * 11 9 7 13 13 Si 1.86802 * 120.00014 * 182.52785 * 11 9 7 14 14 H 1.48497 * 109.47159 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47179 * 120.00359 * 13 11 9 16 16 H 1.48503 * 109.46817 * 240.00337 * 13 11 9 17 17 C 1.50700 * 109.46942 * 205.00344 * 7 6 5 18 18 C 1.38237 * 119.99923 * 330.49637 * 17 7 6 19 19 C 1.38230 * 120.00034 * 180.02562 * 18 17 7 20 20 C 1.38230 * 120.00382 * 359.96129 * 19 18 17 21 21 C 1.38240 * 119.99864 * 359.97438 * 20 19 18 22 22 C 1.38234 * 120.00155 * 150.48344 * 17 7 6 23 23 H 1.08995 * 109.46978 * 299.99954 * 1 2 3 24 24 H 1.08996 * 109.47323 * 59.99731 * 1 2 3 25 25 H 1.09001 * 109.46967 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.46925 * 240.00266 * 2 1 3 27 27 H 1.08996 * 109.47323 * 120.00269 * 2 1 3 28 28 H 1.08995 * 109.47106 * 60.00124 * 3 2 1 29 29 H 1.09000 * 109.47390 * 299.99871 * 3 2 1 30 30 H 1.09002 * 109.46767 * 59.99842 * 4 3 2 31 31 H 1.09000 * 109.46595 * 300.00120 * 4 3 2 32 32 H 1.09001 * 109.46758 * 59.99889 * 5 4 3 33 33 H 1.09001 * 109.46981 * 299.99987 * 5 4 3 34 34 H 1.00896 * 111.00051 * 303.95373 * 6 5 4 35 35 H 0.96999 * 119.99883 * 179.97438 * 12 11 9 36 36 H 1.08002 * 119.99728 * 359.97438 * 18 17 7 37 37 H 1.08004 * 120.00107 * 179.97438 * 19 18 17 38 38 H 1.07995 * 120.00370 * 179.72251 * 20 19 18 39 39 H 1.07994 * 120.00362 * 179.97438 * 21 20 19 40 40 H 1.07992 * 120.00262 * 359.97438 * 22 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 6 4.0800 2.8850 -0.0013 6 7 5.5491 2.8850 -0.0013 7 6 6.0755 4.2564 -0.0013 8 1 5.4198 4.8973 -0.5908 9 6 6.1399 4.7698 1.4140 10 1 5.6490 5.6955 1.6755 11 6 6.8255 4.0576 2.3752 12 7 7.4650 2.9564 2.0464 13 14 6.8463 4.6569 4.1443 14 1 6.0574 5.9105 4.2516 15 1 6.2513 3.6200 5.0252 16 1 8.2473 4.9171 4.5623 17 6 7.4576 4.2639 -0.6018 18 6 8.2660 3.1481 -0.4897 19 6 9.5340 3.1551 -1.0401 20 6 9.9934 4.2776 -1.7033 21 6 9.1846 5.3929 -1.8166 22 6 7.9170 5.3864 -1.2650 23 1 -0.3633 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5138 0.8899 28 1 1.6767 1.9563 0.8899 29 1 1.6767 1.9563 -0.8900 30 1 3.9330 0.9287 -0.8909 31 1 3.9337 0.9285 0.8891 32 1 3.7170 3.3991 0.8887 33 1 3.7163 3.3986 -0.8913 34 1 5.9106 2.3592 0.7803 35 1 7.9476 2.4556 2.7225 36 1 7.9071 2.2712 0.0286 37 1 10.1657 2.2836 -0.9522 38 1 10.9857 4.2847 -2.1294 39 1 9.5436 6.2700 -2.3344 40 1 7.2853 6.2578 -1.3532 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055014942.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:28 Heat of formation + Delta-G solvation = -11.071824 kcal Electronic energy + Delta-G solvation = -17864.215603 eV Core-core repulsion = 15256.170056 eV Total energy + Delta-G solvation = -2608.045546 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.89440 -37.80143 -36.33081 -34.01950 -32.47212 -31.34915 -30.44139 -28.26953 -25.96869 -24.21227 -23.04384 -22.05071 -21.88859 -21.40941 -18.48265 -17.47447 -16.93218 -16.60310 -15.76513 -15.71566 -15.38760 -14.81738 -14.75490 -14.32048 -14.10484 -13.76185 -13.54263 -13.39573 -13.23399 -12.92350 -12.86803 -12.58826 -12.39281 -12.20534 -11.90199 -11.81776 -11.76497 -11.47041 -11.36293 -11.31531 -11.17144 -10.61849 -9.42222 -9.10736 -8.83091 -7.96414 -6.32884 0.89170 1.03573 1.34374 1.38922 1.47036 2.37020 3.06455 3.39755 3.74179 4.06860 4.20853 4.31237 4.37213 4.40382 4.43689 4.60786 4.63444 4.75389 4.79571 4.84117 4.94220 4.97921 5.02860 5.12402 5.16260 5.22703 5.25164 5.29772 5.40353 5.51474 5.53392 5.55931 5.63889 5.70994 5.92950 6.07315 6.10370 6.38070 6.51764 6.61404 6.97575 7.21297 7.42488 8.82996 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.017100 B = 0.006540 C = 0.005240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.015325 B = 4280.628635 C = 5342.719830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C -0.111 4.111 4 C -0.104 4.104 5 C 0.067 3.933 6 N -0.691 5.691 7 C 0.236 3.764 8 H 0.023 0.977 9 C -0.560 4.560 10 H 0.042 0.958 11 C 0.039 3.961 12 N -0.883 5.883 13 Si 0.944 3.056 14 H -0.278 1.278 15 H -0.276 1.276 16 H -0.283 1.283 17 C -0.044 4.044 18 C -0.071 4.071 19 C -0.155 4.155 20 C -0.149 4.149 21 C -0.141 4.141 22 C -0.153 4.153 23 H 0.052 0.948 24 H 0.057 0.943 25 H 0.062 0.938 26 H 0.064 0.936 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.045 0.955 32 H 0.003 0.997 33 H 0.052 0.948 34 H 0.354 0.646 35 H 0.266 0.734 36 H 0.125 0.875 37 H 0.121 0.879 38 H 0.136 0.864 39 H 0.135 0.865 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.805 -3.622 -4.480 7.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.149 4.149 4 C -0.142 4.142 5 C -0.063 4.063 6 N -0.326 5.326 7 C 0.126 3.874 8 H 0.042 0.958 9 C -0.599 4.599 10 H 0.060 0.940 11 C -0.163 4.163 12 N -0.520 5.520 13 Si 0.771 3.229 14 H -0.203 1.203 15 H -0.202 1.202 16 H -0.209 1.209 17 C -0.045 4.045 18 C -0.089 4.089 19 C -0.173 4.173 20 C -0.167 4.167 21 C -0.159 4.159 22 C -0.172 4.172 23 H 0.071 0.929 24 H 0.076 0.924 25 H 0.081 0.919 26 H 0.083 0.917 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.063 0.937 32 H 0.022 0.978 33 H 0.071 0.929 34 H 0.178 0.822 35 H 0.076 0.924 36 H 0.143 0.857 37 H 0.139 0.861 38 H 0.154 0.846 39 H 0.153 0.847 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -4.656 -3.855 -5.065 7.886 hybrid contribution -0.017 0.846 2.183 2.341 sum -4.674 -3.008 -2.882 6.261 Atomic orbital electron populations 1.21759 0.94894 1.02082 1.01926 1.21512 0.96579 0.95938 1.01975 1.21530 0.93964 0.97616 1.01835 1.21466 0.95863 0.95570 1.01329 1.21787 0.89692 0.96647 0.98143 1.60964 1.05574 1.15137 1.50942 1.18044 0.89196 0.87583 0.92529 0.95831 1.21855 1.34289 1.08544 0.95190 0.94012 1.25502 0.93764 0.95358 1.01713 1.69745 1.32187 1.16215 1.33897 0.85729 0.77582 0.78335 0.81283 1.20263 1.20196 1.20865 1.20263 0.98016 0.93199 0.93046 1.21226 0.93227 0.99379 0.95092 1.21374 0.96635 0.99094 1.00234 1.21185 1.00243 0.93730 1.01553 1.21146 0.94054 0.99071 1.01632 1.21072 0.97361 0.97940 1.00824 0.92900 0.92389 0.91865 0.91742 0.92491 0.92721 0.91620 0.91789 0.93663 0.97850 0.92910 0.82200 0.92358 0.85737 0.86071 0.84600 0.84698 0.87365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.76 9.91 71.98 0.71 -2.05 16 2 C -0.12 -2.74 5.93 30.59 0.18 -2.56 16 3 C -0.11 -2.98 5.21 30.60 0.16 -2.83 16 4 C -0.10 -3.49 5.48 30.60 0.17 -3.32 16 5 C 0.07 2.75 5.48 86.30 0.47 3.22 16 6 N -0.69 -32.63 5.39 -499.35 -2.69 -35.33 16 7 C 0.24 11.88 2.50 43.42 0.11 11.99 16 8 H 0.02 1.19 7.75 -2.38 -0.02 1.17 16 9 C -0.56 -30.21 8.62 25.60 0.22 -29.99 16 10 H 0.04 2.30 7.81 -2.91 -0.02 2.28 16 11 C 0.04 2.02 5.05 84.65 0.43 2.45 16 12 N -0.88 -45.93 7.97 21.45 0.17 -45.76 16 13 Si 0.94 42.58 29.54 68.60 2.03 44.61 16 14 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 15 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 16 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 17 C -0.04 -2.14 4.79 -19.87 -0.10 -2.24 16 18 C -0.07 -3.34 7.66 22.27 0.17 -3.17 16 19 C -0.16 -6.32 10.05 22.27 0.22 -6.10 16 20 C -0.15 -5.43 10.05 22.27 0.22 -5.20 16 21 C -0.14 -5.28 10.05 22.27 0.22 -5.05 16 22 C -0.15 -6.69 9.70 22.27 0.22 -6.47 16 23 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 24 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 27 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.00 0.14 8.00 -2.39 -0.02 0.12 16 33 H 0.05 2.07 8.06 -2.39 -0.02 2.05 16 34 H 0.35 17.88 5.52 -89.70 -0.50 17.39 16 35 H 0.27 13.30 8.31 -92.71 -0.77 12.53 16 36 H 0.12 6.30 5.59 -2.91 -0.02 6.29 16 37 H 0.12 4.31 8.06 -2.91 -0.02 4.28 16 38 H 0.14 3.91 8.06 -2.91 -0.02 3.89 16 39 H 0.14 4.05 8.06 -2.91 -0.02 4.03 16 40 H 0.11 4.44 8.06 -2.91 -0.02 4.42 16 Total: -1.00 -55.70 321.27 3.41 -52.29 By element: Atomic # 1 Polarization: 35.01 SS G_CDS: 0.49 Total: 35.50 kcal Atomic # 6 Polarization: -54.72 SS G_CDS: 3.42 Total: -51.31 kcal Atomic # 7 Polarization: -78.57 SS G_CDS: -2.52 Total: -81.09 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.61 kcal Total: -55.70 3.41 -52.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055014942.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.216 kcal (2) G-P(sol) polarization free energy of solvation -55.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds