Wall clock time and date at job start Mon Mar 30 2020 05:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47068 * 2 1 4 4 C 1.52996 * 109.47481 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47168 * 179.97438 * 4 3 2 6 6 N 1.46907 * 109.46740 * 180.02562 * 5 4 3 7 7 C 1.46904 * 110.99702 * 180.02562 * 6 5 4 8 8 H 1.09004 * 109.47265 * 34.99923 * 7 6 5 9 9 C 1.50694 * 109.47092 * 274.99724 * 7 6 5 10 10 H 1.08001 * 120.00419 * 294.98217 * 9 7 6 11 11 C 1.37878 * 120.00036 * 114.98118 * 9 7 6 12 12 N 1.31520 * 119.99869 * 184.83510 * 11 9 7 13 13 Si 1.86795 * 120.00112 * 4.83095 * 11 9 7 14 14 H 1.48510 * 109.47020 * 84.69399 * 13 11 9 15 15 H 1.48496 * 109.47543 * 204.69212 * 13 11 9 16 16 H 1.48497 * 109.47472 * 324.69687 * 13 11 9 17 17 C 1.50696 * 109.47058 * 154.99860 * 7 6 5 18 18 C 1.38237 * 120.00037 * 44.82302 * 17 7 6 19 19 C 1.38242 * 119.99521 * 179.81093 * 18 17 7 20 20 C 1.38227 * 120.00300 * 0.39461 * 19 18 17 21 21 C 1.38235 * 120.00192 * 359.86421 * 20 19 18 22 22 C 1.38237 * 119.99805 * 359.94888 * 21 20 19 23 23 H 1.08999 * 109.47518 * 300.00027 * 1 2 3 24 24 H 1.09001 * 109.47297 * 60.00521 * 1 2 3 25 25 H 1.09004 * 109.46929 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47518 * 239.99972 * 2 1 3 27 27 H 1.09001 * 109.47297 * 119.99479 * 2 1 3 28 28 H 1.09003 * 109.47462 * 59.99615 * 3 2 1 29 29 H 1.09005 * 109.47127 * 299.99915 * 3 2 1 30 30 H 1.08999 * 109.47036 * 60.00015 * 4 3 2 31 31 H 1.08996 * 109.46852 * 300.00277 * 4 3 2 32 32 H 1.08996 * 109.47638 * 300.00012 * 5 4 3 33 33 H 1.08999 * 109.46953 * 60.00181 * 5 4 3 34 34 H 1.00895 * 110.99922 * 303.94764 * 6 5 4 35 35 H 0.97002 * 119.99859 * 180.02562 * 12 11 9 36 36 H 1.07993 * 120.00108 * 359.97438 * 18 17 7 37 37 H 1.08004 * 119.99376 * 180.23019 * 19 18 17 38 38 H 1.08005 * 120.00059 * 179.83299 * 20 19 18 39 39 H 1.07998 * 120.00325 * 179.97438 * 21 20 19 40 40 H 1.07997 * 119.99982 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0798 2.8851 0.0000 6 7 5.5489 2.8851 0.0000 7 6 6.0753 4.2566 0.0000 8 1 5.4195 4.8975 0.5894 9 6 6.1397 4.7699 -1.4154 10 1 6.8071 4.3077 -2.1276 11 6 5.3466 5.8297 -1.8011 12 7 5.3319 6.2166 -3.0580 13 14 4.2930 6.7158 -0.5387 14 1 5.1076 7.7512 0.1469 15 1 3.1426 7.3622 -1.2199 16 1 3.7912 5.7389 0.4608 17 6 7.4574 4.2642 0.6005 18 6 8.3770 3.3005 0.2307 19 6 9.6461 3.3099 0.7787 20 6 9.9930 4.2779 1.7024 21 6 9.0718 5.2383 2.0762 22 6 7.8039 5.2313 1.5254 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5137 0.8900 28 1 1.6766 1.9564 0.8899 29 1 1.6766 1.9563 -0.8900 30 1 3.9336 0.9287 -0.8891 31 1 3.9329 0.9289 0.8908 32 1 3.7169 3.3985 -0.8904 33 1 3.7161 3.3994 0.8895 34 1 5.9105 2.3594 0.7816 35 1 4.7742 6.9625 -3.3294 36 1 8.1047 2.5420 -0.4882 37 1 10.3657 2.5592 0.4870 38 1 10.9837 4.2835 2.1325 39 1 9.3427 5.9944 2.7983 40 1 7.0843 5.9819 1.8171 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055014944.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:30 Heat of formation + Delta-G solvation = -16.146389 kcal Electronic energy + Delta-G solvation = -17660.199168 eV Core-core repulsion = 15051.933572 eV Total energy + Delta-G solvation = -2608.265596 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.18806 -37.93962 -36.28749 -34.40756 -32.91259 -31.64592 -30.63021 -28.63436 -26.18889 -24.12281 -23.34908 -22.23444 -21.94929 -21.33421 -19.08073 -17.73015 -16.85743 -16.54383 -16.15193 -16.01463 -15.57108 -14.98237 -14.84243 -14.68356 -14.22851 -14.16211 -13.95677 -13.73399 -13.34533 -13.06003 -12.92641 -12.72789 -12.32507 -12.15125 -11.91709 -11.86163 -11.81739 -11.60347 -11.48111 -11.35798 -11.32322 -10.80192 -9.67698 -9.41891 -9.00252 -8.32434 -6.34034 0.62645 0.66924 1.25056 1.25767 1.34413 2.26225 2.90329 3.13621 3.51429 4.00971 4.06386 4.16170 4.20926 4.27136 4.31831 4.37211 4.42933 4.55636 4.60058 4.67708 4.77156 4.83368 4.90194 4.91767 4.98163 5.07178 5.19449 5.22281 5.24774 5.32099 5.36902 5.47596 5.51218 5.51787 5.70465 5.74083 5.92480 6.13298 6.28406 6.50138 6.66711 6.95063 7.29824 8.84720 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.016277 B = 0.006705 C = 0.005294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.789911 B = 4175.196906 C = 5288.054098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.118 4.118 4 C -0.104 4.104 5 C 0.067 3.933 6 N -0.683 5.683 7 C 0.216 3.784 8 H 0.015 0.985 9 C -0.477 4.477 10 H 0.030 0.970 11 C 0.017 3.983 12 N -0.944 5.944 13 Si 0.928 3.072 14 H -0.265 1.265 15 H -0.286 1.286 16 H -0.248 1.248 17 C -0.073 4.073 18 C -0.118 4.118 19 C -0.124 4.124 20 C -0.136 4.136 21 C -0.121 4.121 22 C -0.149 4.149 23 H 0.055 0.945 24 H 0.049 0.951 25 H 0.064 0.936 26 H 0.060 0.940 27 H 0.069 0.931 28 H 0.061 0.939 29 H 0.050 0.950 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.041 0.959 33 H 0.014 0.986 34 H 0.327 0.673 35 H 0.265 0.735 36 H 0.112 0.888 37 H 0.142 0.858 38 H 0.150 0.850 39 H 0.144 0.856 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.236 -8.591 12.291 15.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C -0.156 4.156 4 C -0.142 4.142 5 C -0.062 4.062 6 N -0.314 5.314 7 C 0.108 3.892 8 H 0.032 0.968 9 C -0.516 4.516 10 H 0.049 0.951 11 C -0.181 4.181 12 N -0.584 5.584 13 Si 0.753 3.247 14 H -0.190 1.190 15 H -0.212 1.212 16 H -0.172 1.172 17 C -0.074 4.074 18 C -0.136 4.136 19 C -0.142 4.142 20 C -0.154 4.154 21 C -0.139 4.139 22 C -0.168 4.168 23 H 0.074 0.926 24 H 0.068 0.932 25 H 0.083 0.917 26 H 0.079 0.921 27 H 0.087 0.913 28 H 0.080 0.920 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.059 0.941 33 H 0.032 0.968 34 H 0.145 0.855 35 H 0.074 0.926 36 H 0.130 0.870 37 H 0.159 0.841 38 H 0.168 0.832 39 H 0.161 0.839 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -1.274 -8.537 11.483 14.365 hybrid contribution -0.783 1.176 0.502 1.499 sum -2.057 -7.361 11.985 14.215 Atomic orbital electron populations 1.21777 0.95232 1.02132 1.01757 1.21490 0.96344 0.95557 1.02307 1.21579 0.94486 0.97937 1.01614 1.21487 0.95602 0.94700 1.02369 1.21853 0.88335 0.97611 0.98406 1.60771 1.06921 1.15367 1.48328 1.18566 0.89344 0.87397 0.93849 0.96759 1.20944 1.21911 1.13814 0.94911 0.95129 1.25860 0.97703 0.97832 0.96711 1.70045 1.41921 1.28753 1.17691 0.86055 0.79127 0.79461 0.80050 1.18987 1.21181 1.17197 1.20375 0.97500 0.95237 0.94334 1.21028 0.93894 0.98978 0.99742 1.21433 0.95792 0.99689 0.97273 1.21390 1.00325 0.95173 0.98505 1.21341 0.92724 0.99535 1.00316 1.21156 0.98199 0.98890 0.98513 0.92565 0.93188 0.91660 0.92134 0.91255 0.91984 0.93141 0.92109 0.91007 0.94061 0.96810 0.85513 0.92557 0.86984 0.84052 0.83223 0.83865 0.87392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 9.91 71.98 0.71 -2.06 16 2 C -0.12 -2.50 5.93 30.59 0.18 -2.32 16 3 C -0.12 -3.09 5.21 30.59 0.16 -2.93 16 4 C -0.10 -3.14 5.47 30.59 0.17 -2.97 16 5 C 0.07 2.64 5.48 86.30 0.47 3.11 16 6 N -0.68 -28.74 5.81 -499.36 -2.90 -31.64 16 7 C 0.22 10.24 2.18 43.42 0.09 10.33 16 8 H 0.01 0.71 3.98 -2.39 -0.01 0.70 16 9 C -0.48 -27.68 8.87 25.60 0.23 -27.46 16 10 H 0.03 2.02 8.06 -2.91 -0.02 1.99 16 11 C 0.02 0.99 5.47 84.65 0.46 1.45 16 12 N -0.94 -59.68 13.96 21.45 0.30 -59.38 16 13 Si 0.93 44.63 27.24 68.60 1.87 46.50 16 14 H -0.26 -12.21 7.11 99.48 0.71 -11.50 16 15 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 16 H -0.25 -11.10 6.31 99.48 0.63 -10.47 16 17 C -0.07 -3.11 4.65 -19.87 -0.09 -3.20 16 18 C -0.12 -4.54 9.07 22.27 0.20 -4.34 16 19 C -0.12 -3.82 10.05 22.27 0.22 -3.60 16 20 C -0.14 -3.77 10.05 22.27 0.22 -3.54 16 21 C -0.12 -3.68 10.05 22.27 0.22 -3.45 16 22 C -0.15 -5.63 9.67 22.27 0.22 -5.41 16 23 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 24 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 25 H 0.06 1.00 8.14 -2.38 -0.02 0.99 16 26 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.05 1.44 8.14 -2.38 -0.02 1.42 16 30 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.04 1.89 8.00 -2.39 -0.02 1.88 16 33 H 0.01 0.53 7.98 -2.39 -0.02 0.51 16 34 H 0.33 12.07 8.12 -89.70 -0.73 11.34 16 35 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 36 H 0.11 4.51 7.87 -2.91 -0.02 4.49 16 37 H 0.14 3.46 8.06 -2.91 -0.02 3.43 16 38 H 0.15 2.98 8.06 -2.91 -0.02 2.96 16 39 H 0.14 3.36 8.06 -2.91 -0.02 3.34 16 40 H 0.11 4.00 8.00 -2.91 -0.02 3.98 16 Total: -1.00 -66.91 327.36 2.92 -63.98 By element: Atomic # 1 Polarization: 26.74 SS G_CDS: 0.18 Total: 26.93 kcal Atomic # 6 Polarization: -49.86 SS G_CDS: 3.48 Total: -46.39 kcal Atomic # 7 Polarization: -88.42 SS G_CDS: -2.60 Total: -91.02 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 1.87 Total: 46.50 kcal Total: -66.91 2.92 -63.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055014944.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.838 kcal (2) G-P(sol) polarization free energy of solvation -66.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds