Wall clock time and date at job start Mon Mar 30 2020 06:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46668 * 2 1 4 4 C 1.53005 * 109.47061 * 180.02562 * 3 2 1 5 5 H 1.08993 * 109.47123 * 54.99894 * 4 3 2 6 6 C 1.53001 * 109.47044 * 174.99921 * 4 3 2 7 7 N 1.46900 * 109.46828 * 294.99564 * 4 3 2 8 8 C 1.46900 * 110.99730 * 154.99935 * 7 4 3 9 9 H 1.09004 * 109.47406 * 325.00204 * 8 7 4 10 10 C 1.50699 * 109.47321 * 85.00330 * 8 7 4 11 11 H 1.08009 * 119.99550 * 35.04747 * 10 8 7 12 12 C 1.37873 * 120.00532 * 215.05390 * 10 8 7 13 13 N 1.31521 * 119.99740 * 0.69505 * 12 10 8 14 14 Si 1.86794 * 120.00344 * 180.69313 * 12 10 8 15 15 H 1.48496 * 109.47315 * 60.00138 * 14 12 10 16 16 H 1.48497 * 109.47235 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47300 * 300.00085 * 14 12 10 18 18 C 1.50696 * 109.47228 * 205.00321 * 8 7 4 19 19 C 1.38241 * 119.99963 * 313.77727 * 18 8 7 20 20 C 1.38242 * 119.99694 * 179.78560 * 19 18 8 21 21 C 1.38233 * 120.00027 * 0.44426 * 20 19 18 22 22 C 1.38227 * 120.00160 * 359.80930 * 21 20 19 23 23 C 1.38238 * 120.00052 * 134.05010 * 18 8 7 24 24 H 1.09004 * 109.46954 * 299.99667 * 1 2 3 25 25 H 1.08995 * 109.47608 * 60.00471 * 1 2 3 26 26 H 1.09007 * 109.46881 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47122 * 119.99728 * 2 1 3 28 28 H 1.09004 * 109.46954 * 240.00333 * 2 1 3 29 29 H 1.09004 * 109.47464 * 300.00262 * 3 2 1 30 30 H 1.09002 * 109.47374 * 59.99957 * 3 2 1 31 31 H 1.08994 * 109.47272 * 300.00228 * 6 4 3 32 32 H 1.09003 * 109.47269 * 60.00001 * 6 4 3 33 33 H 1.09000 * 109.47276 * 179.97438 * 6 4 3 34 34 H 1.00896 * 111.00616 * 278.95347 * 7 4 3 35 35 H 0.97003 * 120.00063 * 180.02562 * 13 12 10 36 36 H 1.07994 * 120.00003 * 0.02562 * 19 18 8 37 37 H 1.08003 * 119.99522 * 180.26938 * 20 19 18 38 38 H 1.08005 * 119.99633 * 179.83074 * 21 20 19 39 39 H 1.08004 * 119.99879 * 180.02562 * 22 21 20 40 40 H 1.07998 * 120.00234 * 359.97438 * 23 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9329 0.8534 -0.8426 6 6 4.0798 2.8797 -0.1264 7 7 4.0601 0.8572 1.2544 8 6 5.4074 0.2974 1.0831 9 1 5.5012 -0.1242 0.0823 10 6 6.4315 1.3875 1.2671 11 1 6.2591 2.1746 1.9863 12 6 7.5885 1.3802 0.5173 13 7 7.7922 0.4293 -0.3683 14 14 8.8668 2.7206 0.7591 15 1 9.3492 2.6971 2.1633 16 1 10.0087 2.4875 -0.1611 17 1 8.2583 4.0434 0.4669 18 6 5.6358 -0.7843 2.1072 19 6 5.2933 -0.5683 3.4289 20 6 5.4987 -1.5622 4.3675 21 6 6.0550 -2.7688 3.9860 22 6 6.4023 -2.9829 2.6653 23 6 6.1929 -1.9906 1.7259 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.6765 1.9564 -0.8900 30 1 1.6765 1.9564 0.8900 31 1 3.7160 3.3141 -1.0575 32 1 3.7167 3.4690 0.7157 33 1 5.1698 2.8799 -0.1264 34 1 4.0427 1.5357 2.0010 35 1 8.6064 0.4239 -0.8956 36 1 4.8617 0.3756 3.7276 37 1 5.2271 -1.3950 5.3994 38 1 6.2180 -3.5443 4.7198 39 1 6.8365 -3.9258 2.3672 40 1 6.4641 -2.1580 0.6940 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055014961.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:51 Heat of formation + Delta-G solvation = -1.832186 kcal Electronic energy + Delta-G solvation = -18320.018780 eV Core-core repulsion = 15712.373895 eV Total energy + Delta-G solvation = -2607.644886 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.40547 -36.80414 -34.07518 -32.25648 -30.95560 -29.92521 -28.37350 -26.25706 -25.63010 -22.77652 -21.63297 -21.08784 -19.84781 -19.73868 -16.64175 -15.95856 -15.18798 -14.61095 -14.50658 -13.93478 -13.77173 -13.32661 -13.15599 -12.82742 -12.43986 -12.39235 -11.81858 -11.78203 -11.71539 -11.53803 -11.23471 -10.97940 -10.92671 -10.72805 -10.34567 -10.21160 -10.19453 -10.05121 -9.93133 -9.75976 -9.40090 -8.57298 -7.96515 -7.66641 -7.22332 -6.11891 -4.20862 2.37389 2.43660 3.23258 3.28662 3.31563 4.31465 4.81145 5.19524 5.30787 5.32504 5.52415 5.61875 5.72083 5.80995 5.89334 5.91645 6.06378 6.09688 6.19540 6.28896 6.37351 6.39584 6.45787 6.49634 6.58492 6.65069 6.73162 6.85569 6.93565 6.98342 7.07861 7.23815 7.28350 7.38781 7.52567 7.70840 7.80279 8.04411 8.09073 8.22940 8.66141 8.91040 9.43453 10.89775 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.013302 B = 0.009944 C = 0.006425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2104.447544 B = 2815.003050 C = 4356.867679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.116 4.116 3 C -0.105 4.105 4 C 0.097 3.903 5 H 0.069 0.931 6 C -0.179 4.179 7 N -0.681 5.681 8 C 0.229 3.771 9 H 0.073 0.927 10 C -0.532 4.532 11 H 0.056 0.944 12 C 0.074 3.926 13 N -0.881 5.881 14 Si 0.887 3.113 15 H -0.276 1.276 16 H -0.286 1.286 17 H -0.276 1.276 18 C -0.008 4.008 19 C -0.111 4.111 20 C -0.133 4.133 21 C -0.156 4.156 22 C -0.130 4.130 23 C -0.115 4.115 24 H 0.048 0.952 25 H 0.045 0.955 26 H 0.046 0.954 27 H 0.076 0.924 28 H 0.052 0.948 29 H 0.049 0.951 30 H 0.053 0.947 31 H 0.036 0.964 32 H 0.040 0.960 33 H 0.083 0.917 34 H 0.325 0.675 35 H 0.264 0.736 36 H 0.108 0.892 37 H 0.104 0.896 38 H 0.103 0.897 39 H 0.104 0.896 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.701 -1.193 2.163 8.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.154 4.154 3 C -0.143 4.143 4 C -0.013 4.013 5 H 0.087 0.913 6 C -0.237 4.237 7 N -0.309 5.309 8 C 0.121 3.879 9 H 0.091 0.909 10 C -0.571 4.571 11 H 0.074 0.926 12 C -0.131 4.131 13 N -0.518 5.518 14 Si 0.714 3.286 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.202 1.202 18 C -0.009 4.009 19 C -0.130 4.130 20 C -0.151 4.151 21 C -0.175 4.175 22 C -0.148 4.148 23 C -0.133 4.133 24 H 0.067 0.933 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.095 0.905 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.102 0.898 34 H 0.141 0.859 35 H 0.074 0.926 36 H 0.127 0.873 37 H 0.122 0.878 38 H 0.121 0.879 39 H 0.123 0.877 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -7.889 -1.873 1.899 8.328 hybrid contribution 1.563 1.570 0.137 2.220 sum -6.327 -0.303 2.036 6.653 Atomic orbital electron populations 1.21803 0.97371 1.00710 1.00890 1.21412 0.93788 0.97500 1.02705 1.21622 0.96053 0.96351 1.00269 1.21329 0.92744 0.93612 0.93664 0.91319 1.22550 1.04363 0.97407 0.99402 1.60934 1.26985 1.37536 1.05474 1.18428 0.84207 0.90620 0.94643 0.90939 1.21570 1.04437 1.08890 1.22155 0.92571 1.24943 0.97936 0.95626 0.94583 1.69873 1.26539 1.32475 1.22925 0.86736 0.81266 0.82293 0.78255 1.20150 1.21198 1.20201 1.20494 0.91787 0.93583 0.95062 1.20816 1.00787 0.98171 0.93220 1.20942 1.01257 0.94464 0.98476 1.20765 1.03373 0.97463 0.95875 1.20964 1.01399 0.98799 0.93635 1.21053 0.99685 0.93198 0.99405 0.93257 0.93614 0.93479 0.90510 0.92951 0.93248 0.92818 0.94524 0.94078 0.89776 0.85861 0.92576 0.87349 0.87836 0.87935 0.87743 0.86517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.91 37.16 0.37 -1.50 16 2 C -0.12 -1.74 5.82 -26.73 -0.16 -1.90 16 3 C -0.10 -1.61 4.89 -26.73 -0.13 -1.74 16 4 C 0.10 1.79 2.59 -67.71 -0.18 1.61 16 5 H 0.07 1.41 7.43 -51.93 -0.39 1.02 16 6 C -0.18 -3.27 8.92 37.16 0.33 -2.94 16 7 N -0.68 -13.49 5.10 -102.18 -0.52 -14.01 16 8 C 0.23 5.29 2.30 -70.02 -0.16 5.13 16 9 H 0.07 1.90 6.38 -51.93 -0.33 1.56 16 10 C -0.53 -13.32 6.05 -34.44 -0.21 -13.53 16 11 H 0.06 1.42 7.75 -52.48 -0.41 1.01 16 12 C 0.07 1.91 5.46 -17.82 -0.10 1.82 16 13 N -0.88 -23.85 12.79 55.43 0.71 -23.14 16 14 Si 0.89 20.59 29.54 -169.99 -5.02 15.56 16 15 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 16 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 17 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 18 C -0.01 -0.18 4.93 -104.62 -0.52 -0.70 16 19 C -0.11 -2.29 9.27 -39.58 -0.37 -2.66 16 20 C -0.13 -2.46 10.05 -39.58 -0.40 -2.86 16 21 C -0.16 -2.82 10.05 -39.59 -0.40 -3.22 16 22 C -0.13 -2.49 10.05 -39.58 -0.40 -2.89 16 23 C -0.11 -2.52 9.67 -39.58 -0.38 -2.90 16 24 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.55 8.14 -51.92 -0.42 0.12 16 27 H 0.08 1.28 7.75 -51.93 -0.40 0.88 16 28 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.04 0.70 8.13 -51.93 -0.42 0.28 16 33 H 0.08 1.81 6.19 -51.93 -0.32 1.49 16 34 H 0.32 6.37 7.63 -39.29 -0.30 6.07 16 35 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 36 H 0.11 2.12 7.47 -52.49 -0.39 1.73 16 37 H 0.10 1.62 8.06 -52.48 -0.42 1.20 16 38 H 0.10 1.55 8.06 -52.48 -0.42 1.13 16 39 H 0.10 1.74 8.06 -52.48 -0.42 1.32 16 40 H 0.12 2.65 7.99 -52.49 -0.42 2.23 16 LS Contribution 324.89 15.07 4.90 4.90 Total: -1.00 -25.74 324.89 -9.37 -35.11 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: -6.74 Total: 9.86 kcal Atomic # 6 Polarization: -25.60 SS G_CDS: -2.69 Total: -28.28 kcal Atomic # 7 Polarization: -37.34 SS G_CDS: 0.19 Total: -37.15 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -25.74 -9.37 -35.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055014961.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.279 kcal (2) G-P(sol) polarization free energy of solvation -25.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds