Wall clock time and date at job start Mon Mar 30 2020 06:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46668 * 2 1 4 4 C 1.53005 * 109.47061 * 180.02562 * 3 2 1 5 5 H 1.08993 * 109.47123 * 54.99894 * 4 3 2 6 6 C 1.53001 * 109.47044 * 174.99921 * 4 3 2 7 7 N 1.46900 * 109.46828 * 294.99564 * 4 3 2 8 8 C 1.46900 * 110.99730 * 154.99935 * 7 4 3 9 9 H 1.09004 * 109.47406 * 325.00204 * 8 7 4 10 10 C 1.50699 * 109.47321 * 85.00330 * 8 7 4 11 11 H 1.08009 * 119.99550 * 35.04747 * 10 8 7 12 12 C 1.37873 * 120.00532 * 215.05390 * 10 8 7 13 13 N 1.31521 * 119.99740 * 0.69505 * 12 10 8 14 14 Si 1.86794 * 120.00344 * 180.69313 * 12 10 8 15 15 H 1.48496 * 109.47315 * 60.00138 * 14 12 10 16 16 H 1.48497 * 109.47235 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47300 * 300.00085 * 14 12 10 18 18 C 1.50696 * 109.47228 * 205.00321 * 8 7 4 19 19 C 1.38241 * 119.99963 * 313.77727 * 18 8 7 20 20 C 1.38242 * 119.99694 * 179.78560 * 19 18 8 21 21 C 1.38233 * 120.00027 * 0.44426 * 20 19 18 22 22 C 1.38227 * 120.00160 * 359.80930 * 21 20 19 23 23 C 1.38238 * 120.00052 * 134.05010 * 18 8 7 24 24 H 1.09004 * 109.46954 * 299.99667 * 1 2 3 25 25 H 1.08995 * 109.47608 * 60.00471 * 1 2 3 26 26 H 1.09007 * 109.46881 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47122 * 119.99728 * 2 1 3 28 28 H 1.09004 * 109.46954 * 240.00333 * 2 1 3 29 29 H 1.09004 * 109.47464 * 300.00262 * 3 2 1 30 30 H 1.09002 * 109.47374 * 59.99957 * 3 2 1 31 31 H 1.08994 * 109.47272 * 300.00228 * 6 4 3 32 32 H 1.09003 * 109.47269 * 60.00001 * 6 4 3 33 33 H 1.09000 * 109.47276 * 179.97438 * 6 4 3 34 34 H 1.00896 * 111.00616 * 278.95347 * 7 4 3 35 35 H 0.97003 * 120.00063 * 180.02562 * 13 12 10 36 36 H 1.07994 * 120.00003 * 0.02562 * 19 18 8 37 37 H 1.08003 * 119.99522 * 180.26938 * 20 19 18 38 38 H 1.08005 * 119.99633 * 179.83074 * 21 20 19 39 39 H 1.08004 * 119.99879 * 180.02562 * 22 21 20 40 40 H 1.07998 * 120.00234 * 359.97438 * 23 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9329 0.8534 -0.8426 6 6 4.0798 2.8797 -0.1264 7 7 4.0601 0.8572 1.2544 8 6 5.4074 0.2974 1.0831 9 1 5.5012 -0.1242 0.0823 10 6 6.4315 1.3875 1.2671 11 1 6.2591 2.1746 1.9863 12 6 7.5885 1.3802 0.5173 13 7 7.7922 0.4293 -0.3683 14 14 8.8668 2.7206 0.7591 15 1 9.3492 2.6971 2.1633 16 1 10.0087 2.4875 -0.1611 17 1 8.2583 4.0434 0.4669 18 6 5.6358 -0.7843 2.1072 19 6 5.2933 -0.5683 3.4289 20 6 5.4987 -1.5622 4.3675 21 6 6.0550 -2.7688 3.9860 22 6 6.4023 -2.9829 2.6653 23 6 6.1929 -1.9906 1.7259 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.6765 1.9564 -0.8900 30 1 1.6765 1.9564 0.8900 31 1 3.7160 3.3141 -1.0575 32 1 3.7167 3.4690 0.7157 33 1 5.1698 2.8799 -0.1264 34 1 4.0427 1.5357 2.0010 35 1 8.6064 0.4239 -0.8956 36 1 4.8617 0.3756 3.7276 37 1 5.2271 -1.3950 5.3994 38 1 6.2180 -3.5443 4.7198 39 1 6.8365 -3.9258 2.3672 40 1 6.4641 -2.1580 0.6940 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055014961.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:51 Heat of formation + Delta-G solvation = -14.048318 kcal Electronic energy + Delta-G solvation = -18320.548511 eV Core-core repulsion = 15712.373895 eV Total energy + Delta-G solvation = -2608.174617 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.00420 -38.31560 -35.63890 -33.94908 -32.52933 -31.47824 -29.92085 -27.91369 -27.13523 -24.51420 -23.18842 -22.35762 -21.44747 -21.28085 -18.58710 -17.48264 -16.87005 -16.23439 -16.03973 -15.43999 -15.33227 -14.87885 -14.57310 -14.20305 -13.96066 -13.92471 -13.44103 -13.33568 -13.27215 -13.02529 -12.79669 -12.76685 -12.53879 -12.07494 -12.00155 -11.84377 -11.69777 -11.46597 -11.38382 -11.32097 -11.15698 -10.53514 -9.52567 -9.26829 -8.93437 -8.07188 -6.23514 0.80063 0.87682 1.36668 1.38116 1.43822 2.38071 3.11407 3.30426 3.76493 4.02981 4.30397 4.32625 4.35365 4.40778 4.48771 4.54261 4.69281 4.75151 4.85252 4.90747 4.94470 5.04850 5.07111 5.13830 5.18201 5.19880 5.30100 5.39888 5.47616 5.53313 5.55626 5.63108 5.70371 5.72020 5.84684 5.94336 6.06880 6.27151 6.41204 6.50760 6.94867 7.02184 7.42823 8.90373 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.013302 B = 0.009944 C = 0.006425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2104.447544 B = 2815.003050 C = 4356.867679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.115 4.115 3 C -0.094 4.094 4 C 0.096 3.904 5 H 0.038 0.962 6 C -0.171 4.171 7 N -0.671 5.671 8 C 0.240 3.760 9 H 0.031 0.969 10 C -0.528 4.528 11 H 0.053 0.947 12 C 0.027 3.973 13 N -0.912 5.912 14 Si 0.939 3.061 15 H -0.276 1.276 16 H -0.288 1.288 17 H -0.270 1.270 18 C -0.035 4.035 19 C -0.123 4.123 20 C -0.129 4.129 21 C -0.149 4.149 22 C -0.131 4.131 23 C -0.142 4.142 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.040 0.960 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.047 0.953 34 H 0.328 0.672 35 H 0.261 0.739 36 H 0.114 0.886 37 H 0.140 0.860 38 H 0.143 0.857 39 H 0.129 0.871 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.898 -1.048 4.123 9.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.152 4.152 3 C -0.132 4.132 4 C -0.015 4.015 5 H 0.056 0.944 6 C -0.230 4.230 7 N -0.299 5.299 8 C 0.131 3.869 9 H 0.049 0.951 10 C -0.567 4.567 11 H 0.071 0.929 12 C -0.174 4.174 13 N -0.551 5.551 14 Si 0.766 3.234 15 H -0.201 1.201 16 H -0.213 1.213 17 H -0.195 1.195 18 C -0.037 4.037 19 C -0.142 4.142 20 C -0.146 4.146 21 C -0.167 4.167 22 C -0.149 4.149 23 C -0.161 4.161 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.059 0.941 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.145 0.855 35 H 0.070 0.930 36 H 0.132 0.868 37 H 0.157 0.843 38 H 0.160 0.840 39 H 0.147 0.853 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -9.102 -1.716 3.865 10.036 hybrid contribution 1.889 1.468 -0.441 2.432 sum -7.213 -0.248 3.424 7.988 Atomic orbital electron populations 1.21734 0.94847 1.01604 1.01889 1.21356 0.95957 0.96807 1.01113 1.21526 0.93122 0.96974 1.01568 1.21384 0.95061 0.93074 0.91966 0.94373 1.22427 1.01864 0.97587 1.01075 1.60938 1.25031 1.37744 1.06198 1.18106 0.85231 0.90575 0.92944 0.95097 1.21769 1.04606 1.09076 1.21239 0.92875 1.25576 0.99749 0.97352 0.94725 1.70011 1.26836 1.34124 1.24093 0.85902 0.79242 0.80426 0.77854 1.20120 1.21349 1.19529 1.20473 0.93534 0.93755 0.95895 1.20944 1.01209 0.99289 0.92731 1.21357 0.99806 0.93770 0.99712 1.21224 1.01444 0.98196 0.95851 1.21256 1.00834 0.98919 0.93912 1.21037 1.01435 0.94531 0.99100 0.92432 0.92377 0.92733 0.92633 0.94135 0.91521 0.91719 0.92702 0.92507 0.93438 0.85513 0.93016 0.86834 0.84251 0.83969 0.85315 0.89065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.27 9.91 71.98 0.71 -2.56 16 2 C -0.11 -3.38 5.82 30.59 0.18 -3.20 16 3 C -0.09 -2.78 4.89 30.60 0.15 -2.63 16 4 C 0.10 3.59 2.59 44.92 0.12 3.71 16 5 H 0.04 1.66 7.43 -2.39 -0.02 1.64 16 6 C -0.17 -6.25 8.92 71.98 0.64 -5.61 16 7 N -0.67 -27.24 5.10 -477.18 -2.44 -29.68 16 8 C 0.24 11.62 2.30 43.42 0.10 11.72 16 9 H 0.03 1.74 6.38 -2.38 -0.02 1.73 16 10 C -0.53 -27.27 6.05 25.60 0.15 -27.12 16 11 H 0.05 2.72 7.75 -2.91 -0.02 2.70 16 12 C 0.03 1.44 5.46 84.65 0.46 1.90 16 13 N -0.91 -51.78 12.79 21.45 0.27 -51.50 16 14 Si 0.94 43.08 29.54 68.60 2.03 45.10 16 15 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 16 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 17 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 18 C -0.04 -1.63 4.93 -19.87 -0.10 -1.72 16 19 C -0.12 -4.95 9.27 22.27 0.21 -4.75 16 20 C -0.13 -4.37 10.05 22.27 0.22 -4.14 16 21 C -0.15 -4.89 10.05 22.27 0.22 -4.67 16 22 C -0.13 -4.88 10.05 22.27 0.22 -4.66 16 23 C -0.14 -6.44 9.67 22.27 0.22 -6.22 16 24 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 27 H 0.05 1.86 7.75 -2.39 -0.02 1.84 16 28 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 30 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.06 1.87 8.13 -2.39 -0.02 1.85 16 33 H 0.05 2.09 6.19 -2.39 -0.01 2.07 16 34 H 0.33 12.90 7.63 -89.70 -0.68 12.21 16 35 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 36 H 0.11 4.33 7.47 -2.91 -0.02 4.31 16 37 H 0.14 3.72 8.06 -2.91 -0.02 3.70 16 38 H 0.14 3.56 8.06 -2.91 -0.02 3.54 16 39 H 0.13 4.05 8.06 -2.91 -0.02 4.03 16 40 H 0.09 4.47 7.99 -2.91 -0.02 4.45 16 Total: -1.00 -57.62 324.89 3.68 -53.94 By element: Atomic # 1 Polarization: 31.78 SS G_CDS: 0.31 Total: 32.09 kcal Atomic # 6 Polarization: -53.46 SS G_CDS: 3.51 Total: -49.95 kcal Atomic # 7 Polarization: -79.02 SS G_CDS: -2.16 Total: -81.18 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.10 kcal Total: -57.62 3.68 -53.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055014961.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.888 kcal (2) G-P(sol) polarization free energy of solvation -57.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds