Wall clock time and date at job start Mon Mar 30 2020 06:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47065 * 2 1 4 4 C 1.53000 * 109.47066 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.47266 * 305.00254 * 4 3 2 6 6 C 1.52995 * 109.47449 * 185.00038 * 4 3 2 7 7 N 1.46895 * 109.47087 * 64.99929 * 4 3 2 8 8 C 1.46899 * 111.00363 * 205.00152 * 7 4 3 9 9 H 1.09002 * 109.46974 * 325.00061 * 8 7 4 10 10 C 1.50698 * 109.47401 * 84.99823 * 8 7 4 11 11 H 1.07996 * 119.99674 * 35.19924 * 10 8 7 12 12 C 1.37877 * 120.00217 * 215.19923 * 10 8 7 13 13 N 1.31514 * 120.00308 * 5.16674 * 12 10 8 14 14 Si 1.86804 * 119.99828 * 185.16567 * 12 10 8 15 15 H 1.48499 * 109.47235 * 359.97438 * 14 12 10 16 16 H 1.48506 * 109.46977 * 119.99842 * 14 12 10 17 17 H 1.48497 * 109.47024 * 239.99741 * 14 12 10 18 18 C 1.50699 * 109.47482 * 205.00273 * 8 7 4 19 19 C 1.38233 * 120.00337 * 134.40917 * 18 8 7 20 20 C 1.38237 * 120.00276 * 179.97438 * 19 18 8 21 21 C 1.38238 * 119.99798 * 359.97438 * 20 19 18 22 22 C 1.38234 * 119.99956 * 359.97438 * 21 20 19 23 23 C 1.38236 * 120.00321 * 359.97138 * 22 21 20 24 24 H 1.09007 * 109.46704 * 60.00102 * 1 2 3 25 25 H 1.08992 * 109.46858 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46985 * 300.00049 * 1 2 3 27 27 H 1.08999 * 109.47591 * 239.99500 * 2 1 3 28 28 H 1.09007 * 109.46704 * 119.99898 * 2 1 3 29 29 H 1.08997 * 109.47259 * 60.00118 * 3 2 1 30 30 H 1.08989 * 109.47416 * 299.99578 * 3 2 1 31 31 H 1.09006 * 109.47292 * 60.00127 * 6 4 3 32 32 H 1.08994 * 109.47686 * 179.97438 * 6 4 3 33 33 H 1.09004 * 109.47062 * 300.00341 * 6 4 3 34 34 H 1.00897 * 111.00074 * 328.95389 * 7 4 3 35 35 H 0.97002 * 120.00322 * 180.02562 * 13 12 10 36 36 H 1.07999 * 120.00184 * 0.24948 * 19 18 8 37 37 H 1.07991 * 120.00102 * 179.97438 * 20 19 18 38 38 H 1.08001 * 120.00253 * 179.97438 * 21 20 19 39 39 H 1.08005 * 120.00301 * 179.97438 * 22 21 20 40 40 H 1.07996 * 120.00661 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9331 0.8531 0.8427 6 6 4.0800 2.8794 0.1264 7 7 4.0602 0.8570 -1.2542 8 6 5.4074 0.2970 -1.0831 9 1 5.9711 0.9139 -0.3832 10 6 5.3034 -1.1065 -0.5443 11 1 4.4881 -1.7442 -0.8526 12 6 6.2490 -1.5766 0.3422 13 7 7.1832 -0.7699 0.7963 14 14 6.2033 -3.3593 0.8984 15 1 5.0623 -4.0518 0.2475 16 1 7.4725 -4.0295 0.5170 17 1 6.0385 -3.4136 2.3732 18 6 6.1144 0.2731 -2.4137 19 6 7.4216 0.7123 -2.5099 20 6 8.0703 0.6899 -3.7304 21 6 7.4119 0.2278 -4.8547 22 6 6.1050 -0.2123 -4.7583 23 6 5.4567 -0.1910 -3.5376 24 1 -0.3633 0.5139 -0.8901 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8935 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8901 29 1 1.6767 1.9563 0.8900 30 1 1.6768 1.9563 -0.8899 31 1 3.7164 3.3139 1.0576 32 1 5.1700 2.8794 0.1273 33 1 3.7170 3.4688 -0.7157 34 1 3.4200 0.1589 -1.6019 35 1 7.8487 -1.1006 1.4197 36 1 7.9376 1.0687 -1.6307 37 1 9.0913 1.0334 -3.8056 38 1 7.9185 0.2107 -5.8084 39 1 5.5904 -0.5729 -5.6367 40 1 4.4356 -0.5345 -3.4623 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055014962.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:54 Heat of formation + Delta-G solvation = -1.319346 kcal Electronic energy + Delta-G solvation = -18327.460029 eV Core-core repulsion = 15719.837381 eV Total energy + Delta-G solvation = -2607.622647 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.41925 -36.90156 -33.99809 -32.25750 -30.95559 -29.94397 -28.59540 -26.32939 -25.67154 -22.84425 -21.62370 -21.23232 -19.87230 -19.33315 -16.73167 -16.00929 -15.27208 -14.62036 -14.59930 -14.03705 -13.85063 -13.62897 -13.17226 -12.54789 -12.52092 -12.40095 -12.00903 -11.76837 -11.64223 -11.45025 -11.22560 -11.06603 -11.01704 -10.74969 -10.55681 -10.31505 -10.19099 -10.10109 -9.84865 -9.71339 -9.34817 -8.59554 -7.97729 -7.67632 -7.21243 -6.11756 -4.21816 2.36224 2.42719 3.21732 3.30735 3.33807 4.32449 4.80047 5.19911 5.23857 5.30295 5.41670 5.46553 5.71344 5.79951 5.88857 5.90628 5.95676 5.98297 6.15981 6.26078 6.31336 6.34636 6.42823 6.48152 6.50453 6.61438 6.68304 6.78345 6.86417 6.92969 7.03330 7.11285 7.28374 7.37673 7.52530 7.71827 7.80534 8.04159 8.09916 8.24166 8.69548 8.92579 9.44690 10.89857 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.013611 B = 0.009380 C = 0.006951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2056.642242 B = 2984.245518 C = 4027.155415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.127 4.127 3 C -0.116 4.116 4 C 0.089 3.911 5 H 0.052 0.948 6 C -0.134 4.134 7 N -0.685 5.685 8 C 0.226 3.774 9 H 0.076 0.924 10 C -0.534 4.534 11 H 0.056 0.944 12 C 0.074 3.926 13 N -0.881 5.881 14 Si 0.887 3.113 15 H -0.272 1.272 16 H -0.282 1.282 17 H -0.284 1.284 18 C -0.009 4.009 19 C -0.117 4.117 20 C -0.129 4.129 21 C -0.157 4.157 22 C -0.132 4.132 23 C -0.112 4.112 24 H 0.050 0.950 25 H 0.048 0.952 26 H 0.048 0.952 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.041 0.959 32 H 0.053 0.947 33 H 0.049 0.951 34 H 0.325 0.675 35 H 0.263 0.737 36 H 0.116 0.884 37 H 0.105 0.895 38 H 0.103 0.897 39 H 0.104 0.896 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.953 3.288 -3.507 7.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.164 4.164 3 C -0.154 4.154 4 C -0.021 4.021 5 H 0.070 0.930 6 C -0.192 4.192 7 N -0.316 5.316 8 C 0.118 3.882 9 H 0.094 0.906 10 C -0.573 4.573 11 H 0.075 0.925 12 C -0.130 4.130 13 N -0.518 5.518 14 Si 0.714 3.286 15 H -0.197 1.197 16 H -0.208 1.208 17 H -0.210 1.210 18 C -0.010 4.010 19 C -0.135 4.135 20 C -0.147 4.147 21 C -0.175 4.175 22 C -0.151 4.151 23 C -0.130 4.130 24 H 0.069 0.931 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.144 0.856 35 H 0.073 0.927 36 H 0.135 0.865 37 H 0.123 0.877 38 H 0.121 0.879 39 H 0.122 0.878 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -5.573 3.908 -3.616 7.707 hybrid contribution 0.067 -2.017 0.819 2.178 sum -5.506 1.891 -2.796 6.458 Atomic orbital electron populations 1.21766 0.96692 1.00977 1.01159 1.21555 0.94739 0.97507 1.02635 1.21745 0.96111 0.96263 1.01247 1.21284 0.92253 0.95132 0.93447 0.92989 1.21749 1.01378 0.96471 0.99605 1.60969 1.05157 1.38136 1.27341 1.18448 0.85831 0.94655 0.89286 0.90595 1.21644 1.10813 0.99053 1.25819 0.92549 1.24956 0.95315 0.97417 0.95295 1.69890 1.15913 1.34695 1.31303 0.86620 0.78203 0.85431 0.78302 1.19677 1.20827 1.20994 1.20513 0.93599 0.90862 0.96018 1.21053 0.95258 1.00573 0.96660 1.20964 0.98946 1.01373 0.93441 1.20771 0.95502 1.03531 0.97679 1.20946 0.95137 1.01628 0.97347 1.20816 0.99455 1.00484 0.92269 0.93098 0.93273 0.93271 0.91653 0.91964 0.92556 0.92061 0.93974 0.92742 0.93164 0.85620 0.92684 0.86550 0.87700 0.87884 0.87782 0.87363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.91 37.16 0.37 -1.47 16 2 C -0.13 -1.92 5.76 -26.73 -0.15 -2.07 16 3 C -0.12 -1.78 4.81 -26.73 -0.13 -1.91 16 4 C 0.09 1.67 2.46 -67.72 -0.17 1.51 16 5 H 0.05 1.14 7.64 -51.93 -0.40 0.75 16 6 C -0.13 -2.34 9.40 37.15 0.35 -1.99 16 7 N -0.68 -13.97 5.64 -102.18 -0.58 -14.55 16 8 C 0.23 5.34 2.15 -70.02 -0.15 5.19 16 9 H 0.08 2.01 6.01 -51.93 -0.31 1.70 16 10 C -0.53 -13.75 7.96 -34.44 -0.27 -14.02 16 11 H 0.06 1.46 7.76 -52.49 -0.41 1.05 16 12 C 0.07 1.98 5.45 -17.82 -0.10 1.88 16 13 N -0.88 -24.16 12.77 55.43 0.71 -23.46 16 14 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 16 15 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 16 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 18 C -0.01 -0.20 4.93 -104.62 -0.52 -0.71 16 19 C -0.12 -2.58 9.67 -39.58 -0.38 -2.97 16 20 C -0.13 -2.49 10.05 -39.58 -0.40 -2.89 16 21 C -0.16 -2.83 10.05 -39.58 -0.40 -3.23 16 22 C -0.13 -2.46 10.05 -39.58 -0.40 -2.86 16 23 C -0.11 -2.32 9.27 -39.58 -0.37 -2.69 16 24 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 1.05 6.43 -51.93 -0.33 0.72 16 28 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.05 1.05 7.43 -51.93 -0.39 0.66 16 33 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.33 6.48 5.61 -39.29 -0.22 6.26 16 35 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 36 H 0.12 2.66 8.00 -52.49 -0.42 2.24 16 37 H 0.10 1.75 8.06 -52.49 -0.42 1.32 16 38 H 0.10 1.56 8.06 -52.49 -0.42 1.14 16 39 H 0.10 1.64 8.06 -52.48 -0.42 1.21 16 40 H 0.11 2.15 7.45 -52.49 -0.39 1.76 16 LS Contribution 325.12 15.07 4.90 4.90 Total: -1.00 -26.70 325.12 -9.36 -36.05 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: -6.65 Total: 9.49 kcal Atomic # 6 Polarization: -25.54 SS G_CDS: -2.71 Total: -28.25 kcal Atomic # 7 Polarization: -38.14 SS G_CDS: 0.13 Total: -38.01 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -26.70 -9.36 -36.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055014962.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.735 kcal (2) G-P(sol) polarization free energy of solvation -26.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds