Wall clock time and date at job start Mon Mar 30 2020 06:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47065 * 2 1 4 4 C 1.53000 * 109.47066 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.47266 * 305.00254 * 4 3 2 6 6 C 1.52995 * 109.47449 * 185.00038 * 4 3 2 7 7 N 1.46895 * 109.47087 * 64.99929 * 4 3 2 8 8 C 1.46899 * 111.00363 * 205.00152 * 7 4 3 9 9 H 1.09002 * 109.46974 * 325.00061 * 8 7 4 10 10 C 1.50698 * 109.47401 * 84.99823 * 8 7 4 11 11 H 1.07996 * 119.99674 * 35.19924 * 10 8 7 12 12 C 1.37877 * 120.00217 * 215.19923 * 10 8 7 13 13 N 1.31514 * 120.00308 * 5.16674 * 12 10 8 14 14 Si 1.86804 * 119.99828 * 185.16567 * 12 10 8 15 15 H 1.48499 * 109.47235 * 359.97438 * 14 12 10 16 16 H 1.48506 * 109.46977 * 119.99842 * 14 12 10 17 17 H 1.48497 * 109.47024 * 239.99741 * 14 12 10 18 18 C 1.50699 * 109.47482 * 205.00273 * 8 7 4 19 19 C 1.38233 * 120.00337 * 134.40917 * 18 8 7 20 20 C 1.38237 * 120.00276 * 179.97438 * 19 18 8 21 21 C 1.38238 * 119.99798 * 359.97438 * 20 19 18 22 22 C 1.38234 * 119.99956 * 359.97438 * 21 20 19 23 23 C 1.38236 * 120.00321 * 359.97138 * 22 21 20 24 24 H 1.09007 * 109.46704 * 60.00102 * 1 2 3 25 25 H 1.08992 * 109.46858 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46985 * 300.00049 * 1 2 3 27 27 H 1.08999 * 109.47591 * 239.99500 * 2 1 3 28 28 H 1.09007 * 109.46704 * 119.99898 * 2 1 3 29 29 H 1.08997 * 109.47259 * 60.00118 * 3 2 1 30 30 H 1.08989 * 109.47416 * 299.99578 * 3 2 1 31 31 H 1.09006 * 109.47292 * 60.00127 * 6 4 3 32 32 H 1.08994 * 109.47686 * 179.97438 * 6 4 3 33 33 H 1.09004 * 109.47062 * 300.00341 * 6 4 3 34 34 H 1.00897 * 111.00074 * 328.95389 * 7 4 3 35 35 H 0.97002 * 120.00322 * 180.02562 * 13 12 10 36 36 H 1.07999 * 120.00184 * 0.24948 * 19 18 8 37 37 H 1.07991 * 120.00102 * 179.97438 * 20 19 18 38 38 H 1.08001 * 120.00253 * 179.97438 * 21 20 19 39 39 H 1.08005 * 120.00301 * 179.97438 * 22 21 20 40 40 H 1.07996 * 120.00661 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9331 0.8531 0.8427 6 6 4.0800 2.8794 0.1264 7 7 4.0602 0.8570 -1.2542 8 6 5.4074 0.2970 -1.0831 9 1 5.9711 0.9139 -0.3832 10 6 5.3034 -1.1065 -0.5443 11 1 4.4881 -1.7442 -0.8526 12 6 6.2490 -1.5766 0.3422 13 7 7.1832 -0.7699 0.7963 14 14 6.2033 -3.3593 0.8984 15 1 5.0623 -4.0518 0.2475 16 1 7.4725 -4.0295 0.5170 17 1 6.0385 -3.4136 2.3732 18 6 6.1144 0.2731 -2.4137 19 6 7.4216 0.7123 -2.5099 20 6 8.0703 0.6899 -3.7304 21 6 7.4119 0.2278 -4.8547 22 6 6.1050 -0.2123 -4.7583 23 6 5.4567 -0.1910 -3.5376 24 1 -0.3633 0.5139 -0.8901 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8935 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8901 29 1 1.6767 1.9563 0.8900 30 1 1.6768 1.9563 -0.8899 31 1 3.7164 3.3139 1.0576 32 1 5.1700 2.8794 0.1273 33 1 3.7170 3.4688 -0.7157 34 1 3.4200 0.1589 -1.6019 35 1 7.8487 -1.1006 1.4197 36 1 7.9376 1.0687 -1.6307 37 1 9.0913 1.0334 -3.8056 38 1 7.9185 0.2107 -5.8084 39 1 5.5904 -0.5729 -5.6367 40 1 4.4356 -0.5345 -3.4623 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055014962.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:54 Heat of formation + Delta-G solvation = -14.565540 kcal Electronic energy + Delta-G solvation = -18328.034427 eV Core-core repulsion = 15719.837381 eV Total energy + Delta-G solvation = -2608.197045 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.02994 -38.40359 -35.62520 -33.93996 -32.53871 -31.50904 -30.17141 -27.84277 -27.32626 -24.58413 -23.18065 -22.50376 -21.49639 -20.88350 -18.71401 -17.54071 -16.89312 -16.40776 -16.12353 -15.52381 -15.42319 -15.01047 -14.78262 -14.09345 -14.00524 -13.80988 -13.49002 -13.44907 -13.18156 -12.95969 -12.89247 -12.68574 -12.55700 -12.30597 -12.02487 -11.95159 -11.77138 -11.45470 -11.41582 -11.35332 -11.06676 -10.61806 -9.54803 -9.29785 -8.98453 -8.10834 -6.29126 0.77865 0.85504 1.32578 1.35923 1.45020 2.35859 3.07599 3.28219 3.73320 4.00257 4.16533 4.22132 4.29217 4.34322 4.46783 4.60371 4.62659 4.75956 4.80372 4.87686 4.92699 4.95556 5.02676 5.08712 5.14110 5.21249 5.24061 5.38454 5.42460 5.44286 5.47278 5.51969 5.60508 5.65701 5.82724 5.92905 6.05380 6.24693 6.39418 6.48978 6.93851 7.01152 7.39698 8.87029 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.013611 B = 0.009380 C = 0.006951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2056.642242 B = 2984.245518 C = 4027.155415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.126 4.126 3 C -0.105 4.105 4 C 0.086 3.914 5 H 0.011 0.989 6 C -0.127 4.127 7 N -0.676 5.676 8 C 0.236 3.764 9 H 0.036 0.964 10 C -0.537 4.537 11 H 0.051 0.949 12 C 0.027 3.973 13 N -0.911 5.911 14 Si 0.942 3.058 15 H -0.267 1.267 16 H -0.283 1.283 17 H -0.281 1.281 18 C -0.038 4.038 19 C -0.144 4.144 20 C -0.130 4.130 21 C -0.148 4.148 22 C -0.127 4.127 23 C -0.124 4.124 24 H 0.062 0.938 25 H 0.054 0.946 26 H 0.060 0.940 27 H 0.050 0.950 28 H 0.041 0.959 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.024 0.976 33 H 0.062 0.938 34 H 0.328 0.672 35 H 0.262 0.738 36 H 0.091 0.909 37 H 0.131 0.869 38 H 0.144 0.856 39 H 0.141 0.859 40 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.182 3.068 -5.495 9.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.164 4.164 3 C -0.143 4.143 4 C -0.024 4.024 5 H 0.029 0.971 6 C -0.185 4.185 7 N -0.307 5.307 8 C 0.128 3.872 9 H 0.055 0.945 10 C -0.576 4.576 11 H 0.069 0.931 12 C -0.174 4.174 13 N -0.550 5.550 14 Si 0.768 3.232 15 H -0.191 1.191 16 H -0.209 1.209 17 H -0.207 1.207 18 C -0.039 4.039 19 C -0.162 4.162 20 C -0.148 4.148 21 C -0.166 4.166 22 C -0.145 4.145 23 C -0.143 4.143 24 H 0.081 0.919 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.069 0.931 28 H 0.060 0.940 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.083 0.917 32 H 0.043 0.957 33 H 0.081 0.919 34 H 0.147 0.853 35 H 0.071 0.929 36 H 0.109 0.891 37 H 0.148 0.852 38 H 0.162 0.838 39 H 0.159 0.841 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -6.818 3.690 -5.609 9.568 hybrid contribution 0.460 -1.894 1.373 2.385 sum -6.358 1.795 -4.236 7.847 Atomic orbital electron populations 1.21702 0.94003 1.01835 1.02322 1.21523 0.97061 0.96857 1.00955 1.21664 0.93023 0.96870 1.02694 1.21357 0.94885 0.94983 0.91155 0.97088 1.21685 0.99478 0.95956 1.01382 1.60978 1.04013 1.37665 1.28043 1.18131 0.86882 0.92884 0.89342 0.94542 1.21864 1.10268 0.99905 1.25534 0.93087 1.25625 0.95328 1.00685 0.95797 1.70020 1.16709 1.36060 1.32186 0.85754 0.78046 0.81471 0.77919 1.19080 1.20924 1.20710 1.20490 0.94159 0.93011 0.96271 1.21032 0.95501 1.02347 0.97358 1.21265 1.00130 1.00722 0.92644 1.21243 0.95292 1.01334 0.98729 1.21364 0.95456 1.00193 0.97470 1.20937 0.99845 1.00823 0.92680 0.91887 0.92649 0.92109 0.93082 0.93973 0.90743 0.90747 0.91663 0.95662 0.91861 0.85323 0.92916 0.89091 0.85154 0.83789 0.84116 0.87009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.19 9.91 71.98 0.71 -2.48 16 2 C -0.13 -3.75 5.76 30.60 0.18 -3.57 16 3 C -0.10 -3.13 4.81 30.59 0.15 -2.98 16 4 C 0.09 3.34 2.46 44.91 0.11 3.45 16 5 H 0.01 0.51 7.64 -2.38 -0.02 0.50 16 6 C -0.13 -4.52 9.40 71.98 0.68 -3.84 16 7 N -0.68 -28.44 5.64 -477.20 -2.69 -31.13 16 8 C 0.24 11.74 2.15 43.42 0.09 11.83 16 9 H 0.04 2.09 6.01 -2.39 -0.01 2.07 16 10 C -0.54 -28.67 7.96 25.60 0.20 -28.47 16 11 H 0.05 2.71 7.76 -2.91 -0.02 2.69 16 12 C 0.03 1.46 5.45 84.65 0.46 1.92 16 13 N -0.91 -52.48 12.77 21.45 0.27 -52.21 16 14 Si 0.94 43.76 29.54 68.60 2.03 45.79 16 15 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 16 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 17 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 18 C -0.04 -1.78 4.93 -19.87 -0.10 -1.88 16 19 C -0.14 -6.54 9.67 22.27 0.22 -6.32 16 20 C -0.13 -4.82 10.05 22.27 0.22 -4.60 16 21 C -0.15 -4.84 10.05 22.27 0.22 -4.61 16 22 C -0.13 -4.33 10.05 22.27 0.22 -4.10 16 23 C -0.12 -5.07 9.27 22.27 0.21 -4.87 16 24 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 25 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.05 1.64 6.43 -2.39 -0.02 1.63 16 28 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 29 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 32 H 0.02 1.01 7.43 -2.39 -0.02 0.99 16 33 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 34 H 0.33 13.32 5.61 -89.70 -0.50 12.82 16 35 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 36 H 0.09 4.48 8.00 -2.91 -0.02 4.46 16 37 H 0.13 4.07 8.06 -2.92 -0.02 4.05 16 38 H 0.14 3.56 8.06 -2.91 -0.02 3.54 16 39 H 0.14 3.75 8.06 -2.91 -0.02 3.73 16 40 H 0.11 4.36 7.45 -2.91 -0.02 4.34 16 Total: -1.00 -60.12 325.12 3.67 -56.45 By element: Atomic # 1 Polarization: 31.15 SS G_CDS: 0.49 Total: 31.63 kcal Atomic # 6 Polarization: -54.11 SS G_CDS: 3.58 Total: -50.53 kcal Atomic # 7 Polarization: -80.92 SS G_CDS: -2.42 Total: -83.34 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -60.12 3.67 -56.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055014962.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.880 kcal (2) G-P(sol) polarization free energy of solvation -60.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds