Wall clock time and date at job start Mon Mar 30 2020 06:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47411 * 2 1 4 4 C 1.52998 * 109.47206 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.47599 * 54.99836 * 4 3 2 6 6 C 1.53004 * 109.46803 * 174.99831 * 4 3 2 7 7 N 1.46903 * 109.47115 * 294.99556 * 4 3 2 8 8 C 1.46898 * 111.00034 * 155.00097 * 7 4 3 9 9 H 1.09003 * 109.46765 * 35.00622 * 8 7 4 10 10 C 1.50689 * 109.47264 * 275.00220 * 8 7 4 11 11 H 1.08004 * 120.00395 * 119.28011 * 10 8 7 12 12 C 1.37885 * 120.00048 * 299.27986 * 10 8 7 13 13 N 1.31510 * 119.99781 * 9.49698 * 12 10 8 14 14 Si 1.86798 * 119.99684 * 189.49403 * 12 10 8 15 15 H 1.48499 * 109.47226 * 60.00393 * 14 12 10 16 16 H 1.48503 * 109.46683 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47692 * 299.99886 * 14 12 10 18 18 C 1.50697 * 109.46805 * 154.99976 * 8 7 4 19 19 C 1.38233 * 120.00200 * 31.08632 * 18 8 7 20 20 C 1.38234 * 119.99938 * 179.80565 * 19 18 8 21 21 C 1.38237 * 120.00227 * 0.39701 * 20 19 18 22 22 C 1.38232 * 119.99900 * 359.86113 * 21 20 19 23 23 C 1.38235 * 119.99988 * 211.35562 * 18 8 7 24 24 H 1.09000 * 109.46962 * 299.99923 * 1 2 3 25 25 H 1.08998 * 109.47485 * 60.00204 * 1 2 3 26 26 H 1.09005 * 109.47169 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47046 * 120.00103 * 2 1 3 28 28 H 1.09007 * 109.47290 * 239.99527 * 2 1 3 29 29 H 1.09010 * 109.46918 * 299.99648 * 3 2 1 30 30 H 1.08998 * 109.47260 * 59.99627 * 3 2 1 31 31 H 1.09001 * 109.46887 * 179.97438 * 6 4 3 32 32 H 1.08995 * 109.47122 * 299.99487 * 6 4 3 33 33 H 1.08999 * 109.47481 * 59.99957 * 6 4 3 34 34 H 1.00900 * 110.99804 * 31.04645 * 7 4 3 35 35 H 0.96998 * 119.99656 * 180.02562 * 13 12 10 36 36 H 1.07998 * 119.99839 * 359.97438 * 19 18 8 37 37 H 1.08006 * 119.99845 * 180.22790 * 20 19 18 38 38 H 1.08005 * 119.99894 * 179.83017 * 21 20 19 39 39 H 1.07997 * 120.00061 * 179.97438 * 22 21 20 40 40 H 1.08002 * 120.00041 * 359.97438 * 23 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9330 0.8531 -0.8426 6 6 4.0799 2.8795 -0.1264 7 7 4.0602 0.8570 1.2544 8 6 5.4074 0.2970 1.0832 9 1 5.9710 0.9140 0.3833 10 6 5.3033 -1.1065 0.5445 11 1 5.7462 -1.3531 -0.4092 12 6 4.6427 -2.0759 1.2691 13 7 3.9458 -1.7410 2.3329 14 14 4.7377 -3.8647 0.7396 15 1 6.1542 -4.3102 0.7524 16 1 3.9467 -4.7012 1.6777 17 1 4.1871 -4.0049 -0.6324 18 6 6.1142 0.2732 2.4139 19 6 5.3893 0.1044 3.5787 20 6 6.0382 0.0786 4.7990 21 6 7.4111 0.2298 4.8552 22 6 8.1355 0.4041 3.6908 23 6 7.4870 0.4259 2.4701 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8932 -0.5138 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.6767 1.9563 -0.8901 30 1 1.6767 1.9563 0.8899 31 1 5.1699 2.8795 -0.1264 32 1 3.7163 3.3138 -1.0576 33 1 3.7169 3.4689 0.7156 34 1 3.4199 0.1589 1.6020 35 1 3.4814 -2.4230 2.8428 36 1 4.3163 -0.0101 3.5351 37 1 5.4722 -0.0571 5.7088 38 1 7.9178 0.2124 5.8088 39 1 9.2080 0.5227 3.7347 40 1 8.0530 0.5618 1.5604 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055014965.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:57 Heat of formation + Delta-G solvation = 7.020079 kcal Electronic energy + Delta-G solvation = -18722.000907 eV Core-core repulsion = 16114.739884 eV Total energy + Delta-G solvation = -2607.261023 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.29930 -36.71775 -33.98748 -32.11684 -30.64049 -29.69124 -28.31371 -26.31376 -25.74617 -22.66550 -21.39912 -21.00947 -19.82138 -19.24117 -16.50495 -15.85232 -15.21009 -14.74415 -14.22850 -13.84731 -13.64720 -13.48095 -12.96957 -12.53491 -12.38636 -12.19761 -11.92665 -11.64641 -11.55484 -11.35828 -11.09866 -10.94649 -10.90400 -10.63799 -10.43317 -10.27285 -10.07434 -9.89383 -9.75735 -9.46963 -9.35057 -8.68367 -7.76434 -7.38538 -6.94686 -6.05451 -4.28196 2.55950 2.67446 3.22606 3.28208 3.32312 4.30679 5.01612 5.12423 5.41686 5.50953 5.65866 5.66438 5.86251 5.98302 6.02360 6.05558 6.09291 6.16694 6.28460 6.39912 6.43206 6.47870 6.53646 6.60155 6.75994 6.79104 6.88286 6.93573 6.95174 7.05925 7.15410 7.22599 7.35918 7.58196 7.66812 7.85162 8.05880 8.11147 8.29611 8.50379 8.88794 9.22019 9.46429 10.80250 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.016521 B = 0.009779 C = 0.007440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.397074 B = 2862.601141 C = 3762.665530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.131 4.131 3 C -0.112 4.112 4 C 0.086 3.914 5 H 0.038 0.962 6 C -0.135 4.135 7 N -0.687 5.687 8 C 0.238 3.762 9 H 0.034 0.966 10 C -0.540 4.540 11 H 0.055 0.945 12 C 0.078 3.922 13 N -0.875 5.875 14 Si 0.887 3.113 15 H -0.277 1.277 16 H -0.285 1.285 17 H -0.278 1.278 18 C -0.018 4.018 19 C -0.056 4.056 20 C -0.149 4.149 21 C -0.153 4.153 22 C -0.144 4.144 23 C -0.135 4.135 24 H 0.049 0.951 25 H 0.044 0.956 26 H 0.047 0.953 27 H 0.083 0.917 28 H 0.055 0.945 29 H 0.050 0.950 30 H 0.060 0.940 31 H 0.047 0.953 32 H 0.038 0.962 33 H 0.051 0.949 34 H 0.369 0.631 35 H 0.267 0.733 36 H 0.147 0.853 37 H 0.100 0.900 38 H 0.098 0.902 39 H 0.100 0.900 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.968 4.260 -0.654 4.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.168 4.168 3 C -0.150 4.150 4 C -0.024 4.024 5 H 0.056 0.944 6 C -0.194 4.194 7 N -0.326 5.326 8 C 0.129 3.871 9 H 0.052 0.948 10 C -0.579 4.579 11 H 0.073 0.927 12 C -0.125 4.125 13 N -0.513 5.513 14 Si 0.714 3.286 15 H -0.202 1.202 16 H -0.211 1.211 17 H -0.203 1.203 18 C -0.020 4.020 19 C -0.075 4.075 20 C -0.167 4.167 21 C -0.172 4.172 22 C -0.163 4.163 23 C -0.154 4.154 24 H 0.068 0.932 25 H 0.063 0.937 26 H 0.066 0.934 27 H 0.102 0.898 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.057 0.943 33 H 0.070 0.930 34 H 0.197 0.803 35 H 0.078 0.922 36 H 0.165 0.835 37 H 0.118 0.882 38 H 0.116 0.884 39 H 0.118 0.882 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -1.899 4.752 -0.259 5.124 hybrid contribution 0.094 -2.079 -0.705 2.197 sum -1.805 2.673 -0.963 3.366 Atomic orbital electron populations 1.21752 0.97078 1.00783 1.00795 1.21596 0.94371 0.97369 1.03508 1.21691 0.96083 0.96481 1.00755 1.21259 0.92677 0.94446 0.94066 0.94435 1.21805 1.00685 0.97261 0.99606 1.61011 1.06263 1.40392 1.24979 1.18102 0.87383 0.92481 0.89088 0.94809 1.21637 1.35565 0.95404 1.05245 0.92678 1.24905 0.94398 0.98776 0.94422 1.69526 1.30672 1.33594 1.17549 0.86734 0.78359 0.85045 0.78426 1.20240 1.21090 1.20319 1.20190 0.92291 0.92829 0.96649 1.21447 1.02151 0.93637 0.90233 1.21106 0.94230 1.03372 0.97994 1.20759 0.94619 1.04838 0.96947 1.20741 0.98181 1.04203 0.93147 1.20859 0.94941 1.03114 0.96471 0.93161 0.93679 0.93430 0.89840 0.92615 0.93152 0.92167 0.93373 0.94268 0.92981 0.80310 0.92212 0.83517 0.88185 0.88405 0.88209 0.87951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.91 37.15 0.37 -1.78 16 2 C -0.13 -2.32 5.76 -26.74 -0.15 -2.48 16 3 C -0.11 -1.93 4.81 -26.73 -0.13 -2.05 16 4 C 0.09 1.69 2.46 -67.71 -0.17 1.52 16 5 H 0.04 0.80 7.64 -51.93 -0.40 0.41 16 6 C -0.14 -2.34 9.40 37.16 0.35 -1.99 16 7 N -0.69 -15.23 5.25 -102.18 -0.54 -15.77 16 8 C 0.24 5.68 2.33 -70.02 -0.16 5.52 16 9 H 0.03 0.80 7.05 -51.93 -0.37 0.44 16 10 C -0.54 -13.84 8.51 -34.44 -0.29 -14.13 16 11 H 0.05 1.44 7.83 -52.48 -0.41 1.03 16 12 C 0.08 1.97 5.06 -17.82 -0.09 1.88 16 13 N -0.88 -21.71 7.88 55.43 0.44 -21.28 16 14 Si 0.89 20.38 29.55 -169.99 -5.02 15.36 16 15 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 16 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 17 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 18 C -0.02 -0.44 4.74 -104.63 -0.50 -0.93 16 19 C -0.06 -1.30 7.68 -39.58 -0.30 -1.60 16 20 C -0.15 -3.11 10.05 -39.58 -0.40 -3.51 16 21 C -0.15 -3.01 10.05 -39.58 -0.40 -3.40 16 22 C -0.14 -2.87 10.05 -39.58 -0.40 -3.26 16 23 C -0.14 -2.95 9.70 -39.58 -0.38 -3.34 16 24 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.08 1.72 6.43 -51.93 -0.33 1.38 16 28 H 0.06 1.03 8.14 -51.92 -0.42 0.61 16 29 H 0.05 0.77 8.14 -51.92 -0.42 0.35 16 30 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.05 0.86 7.43 -51.93 -0.39 0.47 16 32 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.37 8.57 3.36 -39.29 -0.13 8.43 16 35 H 0.27 6.50 8.31 -40.82 -0.34 6.16 16 36 H 0.15 3.57 5.50 -52.49 -0.29 3.29 16 37 H 0.10 1.87 8.06 -52.48 -0.42 1.44 16 38 H 0.10 1.63 8.06 -52.48 -0.42 1.21 16 39 H 0.10 1.69 8.06 -52.49 -0.42 1.27 16 40 H 0.10 2.08 8.06 -52.49 -0.42 1.66 16 LS Contribution 315.40 15.07 4.75 4.75 Total: -1.00 -25.12 315.40 -9.55 -34.66 By element: Atomic # 1 Polarization: 18.36 SS G_CDS: -6.52 Total: 11.84 kcal Atomic # 6 Polarization: -26.91 SS G_CDS: -2.65 Total: -29.56 kcal Atomic # 7 Polarization: -36.95 SS G_CDS: -0.10 Total: -37.05 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -25.12 -9.55 -34.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055014965.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.682 kcal (2) G-P(sol) polarization free energy of solvation -25.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds