Wall clock time and date at job start Mon Mar 30 2020 06:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47411 * 2 1 4 4 C 1.52998 * 109.47206 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.47599 * 54.99836 * 4 3 2 6 6 C 1.53004 * 109.46803 * 174.99831 * 4 3 2 7 7 N 1.46903 * 109.47115 * 294.99556 * 4 3 2 8 8 C 1.46898 * 111.00034 * 155.00097 * 7 4 3 9 9 H 1.09003 * 109.46765 * 35.00622 * 8 7 4 10 10 C 1.50689 * 109.47264 * 275.00220 * 8 7 4 11 11 H 1.08004 * 120.00395 * 119.28011 * 10 8 7 12 12 C 1.37885 * 120.00048 * 299.27986 * 10 8 7 13 13 N 1.31510 * 119.99781 * 9.49698 * 12 10 8 14 14 Si 1.86798 * 119.99684 * 189.49403 * 12 10 8 15 15 H 1.48499 * 109.47226 * 60.00393 * 14 12 10 16 16 H 1.48503 * 109.46683 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47692 * 299.99886 * 14 12 10 18 18 C 1.50697 * 109.46805 * 154.99976 * 8 7 4 19 19 C 1.38233 * 120.00200 * 31.08632 * 18 8 7 20 20 C 1.38234 * 119.99938 * 179.80565 * 19 18 8 21 21 C 1.38237 * 120.00227 * 0.39701 * 20 19 18 22 22 C 1.38232 * 119.99900 * 359.86113 * 21 20 19 23 23 C 1.38235 * 119.99988 * 211.35562 * 18 8 7 24 24 H 1.09000 * 109.46962 * 299.99923 * 1 2 3 25 25 H 1.08998 * 109.47485 * 60.00204 * 1 2 3 26 26 H 1.09005 * 109.47169 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47046 * 120.00103 * 2 1 3 28 28 H 1.09007 * 109.47290 * 239.99527 * 2 1 3 29 29 H 1.09010 * 109.46918 * 299.99648 * 3 2 1 30 30 H 1.08998 * 109.47260 * 59.99627 * 3 2 1 31 31 H 1.09001 * 109.46887 * 179.97438 * 6 4 3 32 32 H 1.08995 * 109.47122 * 299.99487 * 6 4 3 33 33 H 1.08999 * 109.47481 * 59.99957 * 6 4 3 34 34 H 1.00900 * 110.99804 * 31.04645 * 7 4 3 35 35 H 0.96998 * 119.99656 * 180.02562 * 13 12 10 36 36 H 1.07998 * 119.99839 * 359.97438 * 19 18 8 37 37 H 1.08006 * 119.99845 * 180.22790 * 20 19 18 38 38 H 1.08005 * 119.99894 * 179.83017 * 21 20 19 39 39 H 1.07997 * 120.00061 * 179.97438 * 22 21 20 40 40 H 1.08002 * 120.00041 * 359.97438 * 23 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9330 0.8531 -0.8426 6 6 4.0799 2.8795 -0.1264 7 7 4.0602 0.8570 1.2544 8 6 5.4074 0.2970 1.0832 9 1 5.9710 0.9140 0.3833 10 6 5.3033 -1.1065 0.5445 11 1 5.7462 -1.3531 -0.4092 12 6 4.6427 -2.0759 1.2691 13 7 3.9458 -1.7410 2.3329 14 14 4.7377 -3.8647 0.7396 15 1 6.1542 -4.3102 0.7524 16 1 3.9467 -4.7012 1.6777 17 1 4.1871 -4.0049 -0.6324 18 6 6.1142 0.2732 2.4139 19 6 5.3893 0.1044 3.5787 20 6 6.0382 0.0786 4.7990 21 6 7.4111 0.2298 4.8552 22 6 8.1355 0.4041 3.6908 23 6 7.4870 0.4259 2.4701 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8932 -0.5138 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.6767 1.9563 -0.8901 30 1 1.6767 1.9563 0.8899 31 1 5.1699 2.8795 -0.1264 32 1 3.7163 3.3138 -1.0576 33 1 3.7169 3.4689 0.7156 34 1 3.4199 0.1589 1.6020 35 1 3.4814 -2.4230 2.8428 36 1 4.3163 -0.0101 3.5351 37 1 5.4722 -0.0571 5.7088 38 1 7.9178 0.2124 5.8088 39 1 9.2080 0.5227 3.7347 40 1 8.0530 0.5618 1.5604 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055014965.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:56 Heat of formation + Delta-G solvation = -3.883397 kcal Electronic energy + Delta-G solvation = -18722.473717 eV Core-core repulsion = 16114.739884 eV Total energy + Delta-G solvation = -2607.733833 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.97520 -38.28970 -35.65481 -33.75530 -32.30474 -31.33852 -29.94306 -27.94402 -27.30558 -24.42990 -23.02697 -22.43061 -21.52644 -20.81118 -18.40075 -17.49097 -16.94960 -16.35749 -15.90099 -15.41133 -15.29676 -14.95101 -14.62237 -14.13191 -13.93593 -13.76871 -13.38151 -13.30001 -13.21994 -12.87541 -12.76380 -12.64210 -12.43018 -12.26853 -12.14281 -11.79638 -11.75546 -11.38904 -11.34322 -11.17533 -10.99819 -10.59796 -9.42285 -9.09152 -8.74053 -7.94647 -6.25792 0.88874 1.03245 1.35816 1.39626 1.44202 2.39172 3.10342 3.39662 3.92378 4.07259 4.25539 4.27909 4.38478 4.40362 4.56984 4.63147 4.72107 4.81080 4.84593 4.89808 4.95934 5.02584 5.06066 5.13699 5.20621 5.23804 5.26019 5.42854 5.47991 5.52289 5.56971 5.64831 5.69699 5.74100 5.93483 6.12444 6.15711 6.40715 6.55314 6.64939 7.05929 7.34643 7.55791 8.84937 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.016521 B = 0.009779 C = 0.007440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.397074 B = 2862.601141 C = 3762.665530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.128 4.128 3 C -0.104 4.104 4 C 0.080 3.920 5 H 0.011 0.989 6 C -0.127 4.127 7 N -0.688 5.688 8 C 0.241 3.759 9 H 0.020 0.980 10 C -0.562 4.562 11 H 0.037 0.963 12 C 0.052 3.948 13 N -0.874 5.874 14 Si 0.930 3.070 15 H -0.284 1.284 16 H -0.279 1.279 17 H -0.278 1.278 18 C -0.045 4.045 19 C -0.075 4.075 20 C -0.155 4.155 21 C -0.149 4.149 22 C -0.141 4.141 23 C -0.153 4.153 24 H 0.057 0.943 25 H 0.065 0.935 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.039 0.961 29 H 0.076 0.924 30 H 0.063 0.937 31 H 0.034 0.966 32 H 0.066 0.934 33 H 0.055 0.945 34 H 0.363 0.637 35 H 0.267 0.733 36 H 0.129 0.871 37 H 0.121 0.879 38 H 0.135 0.865 39 H 0.134 0.866 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.029 4.745 0.167 5.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.166 4.166 3 C -0.142 4.142 4 C -0.031 4.031 5 H 0.029 0.971 6 C -0.185 4.185 7 N -0.326 5.326 8 C 0.132 3.868 9 H 0.038 0.962 10 C -0.601 4.601 11 H 0.055 0.945 12 C -0.151 4.151 13 N -0.511 5.511 14 Si 0.757 3.243 15 H -0.210 1.210 16 H -0.204 1.204 17 H -0.203 1.203 18 C -0.046 4.046 19 C -0.094 4.094 20 C -0.173 4.173 21 C -0.167 4.167 22 C -0.159 4.159 23 C -0.171 4.171 24 H 0.076 0.924 25 H 0.084 0.916 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.058 0.942 29 H 0.095 0.905 30 H 0.082 0.918 31 H 0.053 0.947 32 H 0.085 0.915 33 H 0.074 0.926 34 H 0.189 0.811 35 H 0.077 0.923 36 H 0.146 0.854 37 H 0.139 0.861 38 H 0.153 0.847 39 H 0.152 0.848 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -1.965 5.251 0.564 5.635 hybrid contribution 0.155 -2.206 -0.942 2.404 sum -1.809 3.045 -0.378 3.562 Atomic orbital electron populations 1.21688 0.94322 1.01495 1.02176 1.21523 0.96782 0.97250 1.01081 1.21634 0.94096 0.96343 1.02085 1.21414 0.94539 0.95150 0.92000 0.97052 1.21720 0.99811 0.95764 1.01198 1.61054 1.05514 1.39815 1.26219 1.17988 0.88139 0.91336 0.89293 0.96164 1.21717 1.36426 0.96887 1.05025 0.94471 1.25296 0.94263 1.00847 0.94668 1.69634 1.30166 1.33865 1.17422 0.86066 0.77724 0.82322 0.78184 1.21015 1.20426 1.20328 1.20288 0.93312 0.94500 0.96524 1.21341 1.01448 0.95299 0.91276 1.21388 0.95355 1.02764 0.97834 1.21177 0.94075 1.02925 0.98505 1.21134 0.99966 1.02510 0.92293 1.21081 0.94496 1.03660 0.97911 0.92365 0.91641 0.93134 0.93130 0.94183 0.90550 0.91813 0.94708 0.91514 0.92597 0.81096 0.92324 0.85352 0.86111 0.84692 0.84829 0.87498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.87 9.91 71.98 0.71 -3.16 16 2 C -0.13 -4.57 5.76 30.59 0.18 -4.40 16 3 C -0.10 -3.49 4.81 30.59 0.15 -3.34 16 4 C 0.08 3.16 2.46 44.92 0.11 3.27 16 5 H 0.01 0.51 7.64 -2.39 -0.02 0.49 16 6 C -0.13 -4.32 9.40 71.98 0.68 -3.64 16 7 N -0.69 -31.45 5.25 -477.20 -2.51 -33.95 16 8 C 0.24 11.96 2.33 43.42 0.10 12.06 16 9 H 0.02 1.01 7.05 -2.39 -0.02 1.00 16 10 C -0.56 -29.91 8.51 25.60 0.22 -29.69 16 11 H 0.04 2.04 7.83 -2.91 -0.02 2.02 16 12 C 0.05 2.69 5.06 84.66 0.43 3.12 16 13 N -0.87 -44.19 7.88 21.45 0.17 -44.03 16 14 Si 0.93 42.35 29.55 68.60 2.03 44.37 16 15 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 16 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 17 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 18 C -0.05 -2.17 4.74 -19.87 -0.09 -2.26 16 19 C -0.07 -3.49 7.68 22.27 0.17 -3.32 16 20 C -0.16 -6.26 10.05 22.27 0.22 -6.03 16 21 C -0.15 -5.38 10.05 22.27 0.22 -5.16 16 22 C -0.14 -5.25 10.05 22.27 0.22 -5.03 16 23 C -0.15 -6.63 9.70 22.27 0.22 -6.41 16 24 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 25 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.05 1.36 8.14 -2.38 -0.02 1.34 16 27 H 0.05 2.14 6.43 -2.39 -0.02 2.12 16 28 H 0.04 1.51 8.14 -2.38 -0.02 1.49 16 29 H 0.08 2.17 8.14 -2.38 -0.02 2.15 16 30 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.03 1.25 7.43 -2.39 -0.02 1.23 16 32 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.36 17.40 3.36 -89.69 -0.30 17.10 16 35 H 0.27 13.11 8.31 -92.71 -0.77 12.33 16 36 H 0.13 6.40 5.50 -2.91 -0.02 6.39 16 37 H 0.12 4.26 8.06 -2.91 -0.02 4.23 16 38 H 0.14 3.87 8.06 -2.91 -0.02 3.85 16 39 H 0.13 4.02 8.06 -2.91 -0.02 4.00 16 40 H 0.11 4.39 8.06 -2.91 -0.02 4.36 16 Total: -1.00 -54.64 315.40 3.92 -50.72 By element: Atomic # 1 Polarization: 36.18 SS G_CDS: 0.69 Total: 36.88 kcal Atomic # 6 Polarization: -57.53 SS G_CDS: 3.53 Total: -53.99 kcal Atomic # 7 Polarization: -75.64 SS G_CDS: -2.34 Total: -77.98 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.37 kcal Total: -54.64 3.92 -50.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055014965.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.838 kcal (2) G-P(sol) polarization free energy of solvation -54.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds