Wall clock time and date at job start Mon Mar 30 2020 06:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.46778 * 2 1 4 4 C 1.52997 * 109.46778 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.47185 * 304.99940 * 4 3 2 6 6 C 1.53007 * 109.46893 * 185.00237 * 4 3 2 7 7 N 1.46899 * 109.47512 * 65.00166 * 4 3 2 8 8 C 1.46898 * 111.00167 * 204.99979 * 7 4 3 9 9 H 1.08991 * 109.47285 * 34.99809 * 8 7 4 10 10 C 1.50697 * 109.46988 * 274.99495 * 8 7 4 11 11 H 1.08001 * 120.00402 * 327.59021 * 10 8 7 12 12 C 1.37885 * 119.99906 * 147.59189 * 10 8 7 13 13 N 1.31513 * 119.99753 * 182.66517 * 12 10 8 14 14 Si 1.86795 * 119.99894 * 2.65625 * 12 10 8 15 15 H 1.48502 * 109.46910 * 84.77101 * 14 12 10 16 16 H 1.48504 * 109.47321 * 204.76793 * 14 12 10 17 17 H 1.48501 * 109.47514 * 324.77318 * 14 12 10 18 18 C 1.50700 * 109.47056 * 154.99766 * 8 7 4 19 19 C 1.38235 * 120.00236 * 46.02553 * 18 8 7 20 20 C 1.38231 * 120.00239 * 180.02562 * 19 18 8 21 21 C 1.38236 * 120.00128 * 0.06759 * 20 19 18 22 22 C 1.38231 * 119.99518 * 359.97438 * 21 20 19 23 23 C 1.38236 * 120.00665 * 359.97438 * 22 21 20 24 24 H 1.09003 * 109.47200 * 299.99890 * 1 2 3 25 25 H 1.09001 * 109.47273 * 59.99670 * 1 2 3 26 26 H 1.09003 * 109.47281 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47406 * 240.00086 * 2 1 3 28 28 H 1.08998 * 109.47082 * 119.99588 * 2 1 3 29 29 H 1.09003 * 109.47165 * 60.00089 * 3 2 1 30 30 H 1.08993 * 109.47330 * 299.99943 * 3 2 1 31 31 H 1.09004 * 109.47142 * 180.02562 * 6 4 3 32 32 H 1.09001 * 109.46962 * 299.99839 * 6 4 3 33 33 H 1.08998 * 109.46984 * 60.00208 * 6 4 3 34 34 H 1.00899 * 110.99768 * 81.04259 * 7 4 3 35 35 H 0.97006 * 119.99568 * 179.97438 * 13 12 10 36 36 H 1.08002 * 119.99871 * 0.10270 * 19 18 8 37 37 H 1.08005 * 119.99941 * 180.34012 * 20 19 18 38 38 H 1.07998 * 119.99823 * 179.97438 * 21 20 19 39 39 H 1.08009 * 119.99454 * 179.97438 * 22 21 20 40 40 H 1.07996 * 120.00331 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9336 0.8530 0.8409 6 6 4.0799 2.8797 0.1251 7 7 4.0591 0.8575 -1.2561 8 6 5.4065 0.2976 -1.0862 9 1 5.5011 -0.1242 -0.0856 10 6 6.4304 1.3877 -1.2707 11 1 6.2386 2.1981 -1.9584 12 6 7.6123 1.3506 -0.5615 13 7 8.4830 2.3288 -0.6830 14 14 7.9767 -0.0887 0.5719 15 1 8.5731 -1.1988 -0.2138 16 1 8.9310 0.3402 1.6258 17 1 6.7157 -0.5521 1.2048 18 6 5.6340 -0.7839 -2.1107 19 6 5.2867 -0.5689 -3.4314 20 6 5.4949 -1.5611 -4.3711 21 6 6.0490 -2.7688 -3.9900 22 6 6.3955 -2.9840 -2.6692 23 6 6.1883 -1.9915 -1.7296 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6765 1.9564 0.8900 30 1 1.6766 1.9564 -0.8899 31 1 5.1699 2.8797 0.1242 32 1 3.7162 3.4692 -0.7164 33 1 3.7169 3.3137 1.0568 34 1 4.0410 1.5362 -2.0025 35 1 9.3143 2.3029 -0.1838 36 1 4.8539 0.3747 -3.7292 37 1 5.2286 -1.3911 -5.4039 38 1 6.2113 -3.5441 -4.7241 39 1 6.8281 -3.9278 -2.3714 40 1 6.4586 -2.1599 -0.6977 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055014968.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:59 Heat of formation + Delta-G solvation = 3.594840 kcal Electronic energy + Delta-G solvation = -18412.224950 eV Core-core repulsion = 15804.815398 eV Total energy + Delta-G solvation = -2607.409552 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.66750 -36.95563 -34.17045 -32.30054 -31.27112 -30.17207 -28.56013 -26.41860 -25.89765 -22.62188 -21.92845 -21.18242 -19.96614 -19.81323 -17.02088 -16.19694 -15.29305 -14.79172 -14.65410 -14.15865 -13.79449 -13.32778 -13.12490 -12.92046 -12.78142 -12.61416 -12.08385 -11.90103 -11.85675 -11.78012 -11.60192 -11.00814 -10.86965 -10.78588 -10.52785 -10.36884 -10.22131 -10.14412 -9.93849 -9.73036 -9.42863 -8.68859 -8.17076 -7.86887 -7.30832 -6.23175 -4.22913 2.14678 2.23037 3.20399 3.25619 3.29135 4.28148 4.58920 5.10872 5.15309 5.23478 5.43203 5.53310 5.56539 5.59655 5.74132 5.78839 5.96666 5.99839 6.07780 6.12798 6.22244 6.29042 6.32453 6.37351 6.39044 6.49222 6.56906 6.65656 6.79919 6.82101 6.83119 6.88665 7.18070 7.22661 7.28311 7.42148 7.56888 7.80378 7.98414 8.31158 8.46849 8.79698 9.38780 10.88727 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.014393 B = 0.010112 C = 0.007100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.870345 B = 2768.219636 C = 3942.542187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.117 4.117 3 C -0.105 4.105 4 C 0.093 3.907 5 H 0.064 0.936 6 C -0.182 4.182 7 N -0.674 5.674 8 C 0.201 3.799 9 H 0.053 0.947 10 C -0.528 4.528 11 H 0.078 0.922 12 C 0.080 3.920 13 N -0.890 5.890 14 Si 0.865 3.135 15 H -0.267 1.267 16 H -0.289 1.289 17 H -0.262 1.262 18 C -0.018 4.018 19 C -0.100 4.100 20 C -0.125 4.125 21 C -0.152 4.152 22 C -0.122 4.122 23 C -0.139 4.139 24 H 0.045 0.955 25 H 0.049 0.951 26 H 0.046 0.954 27 H 0.076 0.924 28 H 0.050 0.950 29 H 0.051 0.949 30 H 0.056 0.944 31 H 0.089 0.911 32 H 0.044 0.956 33 H 0.037 0.963 34 H 0.333 0.667 35 H 0.265 0.735 36 H 0.115 0.885 37 H 0.109 0.891 38 H 0.107 0.893 39 H 0.108 0.892 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.610 -5.493 -0.557 11.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.155 4.155 3 C -0.143 4.143 4 C -0.017 4.017 5 H 0.083 0.917 6 C -0.240 4.240 7 N -0.302 5.302 8 C 0.092 3.908 9 H 0.071 0.929 10 C -0.566 4.566 11 H 0.096 0.904 12 C -0.124 4.124 13 N -0.527 5.527 14 Si 0.693 3.307 15 H -0.192 1.192 16 H -0.216 1.216 17 H -0.187 1.187 18 C -0.019 4.019 19 C -0.118 4.118 20 C -0.144 4.144 21 C -0.170 4.170 22 C -0.141 4.141 23 C -0.158 4.158 24 H 0.065 0.935 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.095 0.905 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.107 0.893 32 H 0.063 0.937 33 H 0.056 0.944 34 H 0.150 0.850 35 H 0.075 0.925 36 H 0.133 0.867 37 H 0.127 0.873 38 H 0.125 0.875 39 H 0.126 0.874 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -9.747 -6.019 -0.385 11.462 hybrid contribution 1.125 0.136 0.634 1.299 sum -8.622 -5.884 0.250 10.441 Atomic orbital electron populations 1.21798 0.97218 1.00756 1.01010 1.21426 0.93979 0.97490 1.02602 1.21613 0.95668 0.96396 1.00603 1.21386 0.93188 0.93949 0.93193 0.91727 1.22580 1.04812 0.96919 0.99705 1.60880 1.25392 1.38064 1.05892 1.18820 0.86978 0.91576 0.93427 0.92943 1.21534 1.01753 1.07320 1.26004 0.90376 1.24995 0.95872 0.95322 0.96247 1.69896 1.09395 1.31541 1.41821 0.87106 0.78603 0.83814 0.81218 1.19215 1.21575 1.18728 1.20491 0.92466 0.93192 0.95779 1.20792 0.99925 0.98359 0.92733 1.21024 1.00400 0.94201 0.98733 1.20816 1.02804 0.97583 0.95774 1.20910 1.00926 0.98592 0.93631 1.20950 1.01989 0.94012 0.98851 0.93549 0.93151 0.93464 0.90500 0.93071 0.93010 0.92525 0.89265 0.93713 0.94380 0.84978 0.92460 0.86741 0.87301 0.87464 0.87428 0.87745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.91 37.16 0.37 -1.42 16 2 C -0.12 -1.67 5.82 -26.73 -0.16 -1.83 16 3 C -0.10 -1.54 4.89 -26.73 -0.13 -1.67 16 4 C 0.09 1.66 2.59 -67.71 -0.18 1.48 16 5 H 0.06 1.24 7.43 -51.93 -0.39 0.85 16 6 C -0.18 -3.31 8.92 37.16 0.33 -2.98 16 7 N -0.67 -12.92 5.10 -102.18 -0.52 -13.44 16 8 C 0.20 4.46 1.84 -70.02 -0.13 4.33 16 9 H 0.05 1.23 4.30 -51.93 -0.22 1.01 16 10 C -0.53 -13.57 6.61 -34.44 -0.23 -13.80 16 11 H 0.08 2.19 7.98 -52.49 -0.42 1.77 16 12 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 13 N -0.89 -25.96 13.96 55.43 0.77 -25.19 16 14 Si 0.86 20.81 24.91 -169.99 -4.23 16.57 16 15 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 16 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 17 H -0.26 -6.00 6.10 56.52 0.34 -5.66 16 18 C -0.02 -0.39 4.83 -104.62 -0.51 -0.89 16 19 C -0.10 -1.96 9.27 -39.58 -0.37 -2.33 16 20 C -0.13 -2.20 10.05 -39.58 -0.40 -2.59 16 21 C -0.15 -2.57 10.05 -39.58 -0.40 -2.97 16 22 C -0.12 -2.22 10.05 -39.58 -0.40 -2.62 16 23 C -0.14 -2.88 8.74 -39.58 -0.35 -3.23 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.08 1.22 7.75 -51.93 -0.40 0.82 16 28 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.09 1.97 6.19 -51.93 -0.32 1.65 16 32 H 0.04 0.77 8.13 -51.93 -0.42 0.35 16 33 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.33 6.39 7.61 -39.29 -0.30 6.09 16 35 H 0.27 7.36 8.31 -40.82 -0.34 7.03 16 36 H 0.11 2.16 7.47 -52.49 -0.39 1.77 16 37 H 0.11 1.60 8.06 -52.48 -0.42 1.18 16 38 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 39 H 0.11 1.66 8.06 -52.48 -0.42 1.24 16 40 H 0.10 2.15 6.30 -52.49 -0.33 1.82 16 LS Contribution 315.93 15.07 4.76 4.76 Total: -1.00 -27.33 315.93 -8.46 -35.79 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: -6.61 Total: 9.93 kcal Atomic # 6 Polarization: -25.80 SS G_CDS: -2.63 Total: -28.43 kcal Atomic # 7 Polarization: -38.88 SS G_CDS: 0.25 Total: -38.63 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -4.23 Total: 16.57 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -27.33 -8.46 -35.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055014968.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.386 kcal (2) G-P(sol) polarization free energy of solvation -27.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds