Wall clock time and date at job start Mon Mar 30 2020 06:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.46778 * 2 1 4 4 C 1.52997 * 109.46778 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.47185 * 304.99940 * 4 3 2 6 6 C 1.53007 * 109.46893 * 185.00237 * 4 3 2 7 7 N 1.46899 * 109.47512 * 65.00166 * 4 3 2 8 8 C 1.46898 * 111.00167 * 204.99979 * 7 4 3 9 9 H 1.08991 * 109.47285 * 34.99809 * 8 7 4 10 10 C 1.50697 * 109.46988 * 274.99495 * 8 7 4 11 11 H 1.08001 * 120.00402 * 327.59021 * 10 8 7 12 12 C 1.37885 * 119.99906 * 147.59189 * 10 8 7 13 13 N 1.31513 * 119.99753 * 182.66517 * 12 10 8 14 14 Si 1.86795 * 119.99894 * 2.65625 * 12 10 8 15 15 H 1.48502 * 109.46910 * 84.77101 * 14 12 10 16 16 H 1.48504 * 109.47321 * 204.76793 * 14 12 10 17 17 H 1.48501 * 109.47514 * 324.77318 * 14 12 10 18 18 C 1.50700 * 109.47056 * 154.99766 * 8 7 4 19 19 C 1.38235 * 120.00236 * 46.02553 * 18 8 7 20 20 C 1.38231 * 120.00239 * 180.02562 * 19 18 8 21 21 C 1.38236 * 120.00128 * 0.06759 * 20 19 18 22 22 C 1.38231 * 119.99518 * 359.97438 * 21 20 19 23 23 C 1.38236 * 120.00665 * 359.97438 * 22 21 20 24 24 H 1.09003 * 109.47200 * 299.99890 * 1 2 3 25 25 H 1.09001 * 109.47273 * 59.99670 * 1 2 3 26 26 H 1.09003 * 109.47281 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47406 * 240.00086 * 2 1 3 28 28 H 1.08998 * 109.47082 * 119.99588 * 2 1 3 29 29 H 1.09003 * 109.47165 * 60.00089 * 3 2 1 30 30 H 1.08993 * 109.47330 * 299.99943 * 3 2 1 31 31 H 1.09004 * 109.47142 * 180.02562 * 6 4 3 32 32 H 1.09001 * 109.46962 * 299.99839 * 6 4 3 33 33 H 1.08998 * 109.46984 * 60.00208 * 6 4 3 34 34 H 1.00899 * 110.99768 * 81.04259 * 7 4 3 35 35 H 0.97006 * 119.99568 * 179.97438 * 13 12 10 36 36 H 1.08002 * 119.99871 * 0.10270 * 19 18 8 37 37 H 1.08005 * 119.99941 * 180.34012 * 20 19 18 38 38 H 1.07998 * 119.99823 * 179.97438 * 21 20 19 39 39 H 1.08009 * 119.99454 * 179.97438 * 22 21 20 40 40 H 1.07996 * 120.00331 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9336 0.8530 0.8409 6 6 4.0799 2.8797 0.1251 7 7 4.0591 0.8575 -1.2561 8 6 5.4065 0.2976 -1.0862 9 1 5.5011 -0.1242 -0.0856 10 6 6.4304 1.3877 -1.2707 11 1 6.2386 2.1981 -1.9584 12 6 7.6123 1.3506 -0.5615 13 7 8.4830 2.3288 -0.6830 14 14 7.9767 -0.0887 0.5719 15 1 8.5731 -1.1988 -0.2138 16 1 8.9310 0.3402 1.6258 17 1 6.7157 -0.5521 1.2048 18 6 5.6340 -0.7839 -2.1107 19 6 5.2867 -0.5689 -3.4314 20 6 5.4949 -1.5611 -4.3711 21 6 6.0490 -2.7688 -3.9900 22 6 6.3955 -2.9840 -2.6692 23 6 6.1883 -1.9915 -1.7296 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6765 1.9564 0.8900 30 1 1.6766 1.9564 -0.8899 31 1 5.1699 2.8797 0.1242 32 1 3.7162 3.4692 -0.7164 33 1 3.7169 3.3137 1.0568 34 1 4.0410 1.5362 -2.0025 35 1 9.3143 2.3029 -0.1838 36 1 4.8539 0.3747 -3.7292 37 1 5.2286 -1.3911 -5.4039 38 1 6.2113 -3.5441 -4.7241 39 1 6.8281 -3.9278 -2.3714 40 1 6.4586 -2.1599 -0.6977 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055014968.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:59 Heat of formation + Delta-G solvation = -11.584180 kcal Electronic energy + Delta-G solvation = -18412.883161 eV Core-core repulsion = 15804.815398 eV Total energy + Delta-G solvation = -2608.067764 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.18636 -38.41221 -35.67637 -34.10108 -32.77293 -31.62027 -30.04625 -28.19562 -27.23497 -24.32923 -23.39318 -22.38457 -21.43326 -21.37605 -19.04005 -17.63759 -16.93220 -16.35630 -16.18722 -15.55873 -15.20063 -14.88157 -14.61048 -14.54854 -14.15118 -14.09866 -13.69961 -13.50909 -13.37491 -13.27995 -12.82916 -12.67880 -12.46135 -12.12884 -12.08399 -11.88301 -11.71360 -11.51277 -11.36804 -11.32389 -11.23948 -10.71443 -9.63115 -9.38618 -8.95130 -8.34394 -6.34885 0.67563 0.76498 1.26107 1.28988 1.34160 2.26578 2.98148 3.17270 3.62017 3.97696 4.15754 4.27859 4.30001 4.36066 4.39612 4.46876 4.53394 4.67111 4.73569 4.81861 4.88450 4.91393 4.94425 5.05498 5.09446 5.18101 5.21745 5.29870 5.36468 5.39057 5.45774 5.54437 5.64789 5.70030 5.75042 5.79998 5.99130 6.11126 6.33070 6.46984 6.67664 6.82284 7.29857 8.80915 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.014393 B = 0.010112 C = 0.007100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.870345 B = 2768.219636 C = 3942.542187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.115 4.115 3 C -0.095 4.095 4 C 0.090 3.910 5 H 0.049 0.951 6 C -0.173 4.173 7 N -0.662 5.662 8 C 0.210 3.790 9 H 0.039 0.961 10 C -0.509 4.509 11 H 0.043 0.957 12 C 0.027 3.973 13 N -0.939 5.939 14 Si 0.915 3.085 15 H -0.262 1.262 16 H -0.292 1.292 17 H -0.248 1.248 18 C -0.047 4.047 19 C -0.116 4.116 20 C -0.124 4.124 21 C -0.143 4.143 22 C -0.125 4.125 23 C -0.163 4.163 24 H 0.057 0.943 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.045 0.955 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.044 0.956 32 H 0.051 0.949 33 H 0.059 0.941 34 H 0.332 0.668 35 H 0.264 0.736 36 H 0.112 0.888 37 H 0.141 0.859 38 H 0.147 0.853 39 H 0.137 0.863 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.272 -7.533 -1.198 13.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.153 4.153 3 C -0.133 4.133 4 C -0.020 4.020 5 H 0.068 0.932 6 C -0.232 4.232 7 N -0.291 5.291 8 C 0.101 3.899 9 H 0.057 0.943 10 C -0.548 4.548 11 H 0.061 0.939 12 C -0.172 4.172 13 N -0.579 5.579 14 Si 0.741 3.259 15 H -0.186 1.186 16 H -0.219 1.219 17 H -0.172 1.172 18 C -0.048 4.048 19 C -0.135 4.135 20 C -0.141 4.141 21 C -0.161 4.161 22 C -0.143 4.143 23 C -0.182 4.182 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.064 0.936 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.149 0.851 35 H 0.073 0.927 36 H 0.130 0.870 37 H 0.159 0.841 38 H 0.164 0.836 39 H 0.155 0.845 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -11.439 -8.074 -1.026 14.039 hybrid contribution 1.567 0.767 0.735 1.893 sum -9.872 -7.307 -0.291 12.286 Atomic orbital electron populations 1.21737 0.95000 1.01624 1.01832 1.21372 0.95892 0.96600 1.01409 1.21524 0.92742 0.97245 1.01742 1.21507 0.95538 0.93015 0.91941 0.93229 1.22451 1.01785 0.97787 1.01190 1.60934 1.23430 1.38138 1.06553 1.18604 0.87125 0.90960 0.93239 0.94305 1.21668 1.02090 1.07175 1.23853 0.93868 1.25666 0.96047 0.97475 0.98062 1.70029 1.10209 1.33758 1.43908 0.86288 0.78829 0.81173 0.79607 1.18646 1.21865 1.17227 1.20416 0.94559 0.93638 0.96184 1.20918 1.00601 0.99233 0.92706 1.21409 0.99261 0.93691 0.99788 1.21296 1.00699 0.98074 0.96052 1.21286 1.00232 0.99003 0.93766 1.21094 1.02931 0.94709 0.99421 0.92392 0.92643 0.92647 0.92407 0.93610 0.91229 0.91910 0.93666 0.92993 0.92249 0.85080 0.92719 0.86994 0.84137 0.83564 0.84531 0.88367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 9.91 71.98 0.71 -2.34 16 2 C -0.12 -3.09 5.82 30.60 0.18 -2.92 16 3 C -0.09 -2.63 4.89 30.60 0.15 -2.48 16 4 C 0.09 3.21 2.59 44.92 0.12 3.32 16 5 H 0.05 1.91 7.43 -2.39 -0.02 1.89 16 6 C -0.17 -6.40 8.92 71.98 0.64 -5.76 16 7 N -0.66 -25.75 5.10 -477.19 -2.43 -28.18 16 8 C 0.21 9.53 1.84 43.42 0.08 9.61 16 9 H 0.04 1.86 4.30 -2.39 -0.01 1.85 16 10 C -0.51 -27.27 6.61 25.60 0.17 -27.10 16 11 H 0.04 2.57 7.98 -2.91 -0.02 2.54 16 12 C 0.03 1.50 5.47 84.66 0.46 1.97 16 13 N -0.94 -57.24 13.96 21.45 0.30 -56.94 16 14 Si 0.92 43.91 24.91 68.60 1.71 45.62 16 15 H -0.26 -12.22 7.11 99.48 0.71 -11.52 16 16 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 17 H -0.25 -11.16 6.10 99.48 0.61 -10.56 16 18 C -0.05 -2.00 4.83 -19.87 -0.10 -2.10 16 19 C -0.12 -4.48 9.27 22.27 0.21 -4.28 16 20 C -0.12 -3.97 10.05 22.27 0.22 -3.74 16 21 C -0.14 -4.29 10.05 22.27 0.22 -4.07 16 22 C -0.12 -4.16 10.05 22.27 0.22 -3.94 16 23 C -0.16 -6.56 8.74 22.27 0.19 -6.36 16 24 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.06 1.77 7.75 -2.39 -0.02 1.75 16 28 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.04 2.07 6.19 -2.38 -0.01 2.05 16 32 H 0.05 1.80 8.13 -2.39 -0.02 1.78 16 33 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.33 13.04 7.61 -89.70 -0.68 12.36 16 35 H 0.26 15.28 8.31 -92.70 -0.77 14.51 16 36 H 0.11 4.25 7.47 -2.91 -0.02 4.22 16 37 H 0.14 3.57 8.06 -2.91 -0.02 3.54 16 38 H 0.15 3.26 8.06 -2.91 -0.02 3.24 16 39 H 0.14 3.68 8.06 -2.91 -0.02 3.66 16 40 H 0.10 3.97 6.30 -2.91 -0.02 3.95 16 Total: -1.00 -61.23 315.93 3.28 -57.95 By element: Atomic # 1 Polarization: 31.51 SS G_CDS: 0.22 Total: 31.73 kcal Atomic # 6 Polarization: -53.67 SS G_CDS: 3.49 Total: -50.18 kcal Atomic # 7 Polarization: -82.99 SS G_CDS: -2.13 Total: -85.12 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 1.71 Total: 45.62 kcal Total: -61.23 3.28 -57.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055014968.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.365 kcal (2) G-P(sol) polarization free energy of solvation -61.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds