Wall clock time and date at job start Mon Mar 30 2020 05:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46947 * 2 1 4 4 C 1.53003 * 109.46993 * 119.99548 * 2 1 3 5 5 C 1.53005 * 109.47035 * 65.00705 * 4 2 1 6 6 N 1.46888 * 109.47042 * 179.97438 * 5 4 2 7 7 C 1.46905 * 110.99999 * 179.97438 * 6 5 4 8 8 H 1.08999 * 109.46623 * 324.28399 * 7 6 5 9 9 C 1.50697 * 109.47089 * 84.28477 * 7 6 5 10 10 H 1.08003 * 119.99725 * 60.78166 * 9 7 6 11 11 C 1.37875 * 119.99998 * 240.77535 * 9 7 6 12 12 N 1.31520 * 119.99975 * 174.87200 * 11 9 7 13 13 Si 1.86791 * 120.00168 * 354.87445 * 11 9 7 14 14 H 1.48501 * 109.47457 * 84.75130 * 13 11 9 15 15 H 1.48502 * 109.47221 * 204.75053 * 13 11 9 16 16 H 1.48500 * 109.47160 * 324.75044 * 13 11 9 17 17 C 1.50704 * 109.47071 * 204.28583 * 7 6 5 18 18 C 1.38240 * 119.99794 * 133.72161 * 17 7 6 19 19 C 1.38233 * 120.00052 * 180.02562 * 18 17 7 20 20 C 1.38236 * 119.99764 * 359.95096 * 19 18 17 21 21 C 1.38238 * 120.00291 * 0.02562 * 20 19 18 22 22 C 1.38230 * 119.99957 * 313.69974 * 17 7 6 23 23 H 1.08993 * 109.47538 * 299.99994 * 1 2 3 24 24 H 1.08997 * 109.47111 * 60.00700 * 1 2 3 25 25 H 1.09007 * 109.46785 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47082 * 240.00191 * 2 1 3 27 27 H 1.08998 * 109.47149 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.46899 * 300.00068 * 3 2 1 29 29 H 1.09002 * 109.47110 * 59.99453 * 3 2 1 30 30 H 1.08998 * 109.47393 * 305.00149 * 4 2 1 31 31 H 1.09004 * 109.46509 * 184.99830 * 4 2 1 32 32 H 1.09001 * 109.46987 * 59.99480 * 5 4 2 33 33 H 1.09005 * 109.46419 * 299.99666 * 5 4 2 34 34 H 1.00897 * 111.00421 * 303.94685 * 6 5 4 35 35 H 0.97000 * 120.00029 * 180.02562 * 12 11 9 36 36 H 1.08005 * 119.99668 * 359.97438 * 18 17 7 37 37 H 1.07992 * 120.00182 * 179.97438 * 19 18 17 38 38 H 1.08003 * 119.99804 * 179.72653 * 20 19 18 39 39 H 1.07994 * 119.99974 * 179.97438 * 21 20 19 40 40 H 1.07992 * 120.00119 * 359.97438 * 22 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6353 -2.1955 1.1881 6 7 2.1255 -2.8880 2.3872 7 6 1.7541 -4.3091 2.3632 8 1 0.7707 -4.4199 1.9064 9 6 2.7704 -5.0803 1.5611 10 1 3.8044 -5.0969 1.8726 11 6 2.3801 -5.7649 0.4297 12 7 3.2811 -6.3539 -0.3260 13 14 0.5719 -5.8559 -0.0297 14 1 0.1952 -4.6435 -0.8000 15 1 0.3322 -7.0638 -0.8597 16 1 -0.2493 -5.9329 1.2051 17 6 1.7165 -4.8423 3.7722 18 6 0.6494 -5.6151 4.1905 19 6 0.6146 -6.1039 5.4831 20 6 1.6475 -5.8206 6.3571 21 6 2.7149 -5.0482 5.9387 22 6 2.7494 -4.5591 4.6462 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 3.1300 1.4426 0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6765 1.9564 0.8899 30 1 1.6054 -0.2616 2.1370 31 1 3.1263 -0.6442 1.2951 32 1 2.0700 -2.6549 0.3003 33 1 0.5490 -2.2723 1.1421 34 1 3.1233 -2.7764 2.4868 35 1 3.0066 -6.8352 -1.1222 36 1 -0.1576 -5.8364 3.5076 37 1 -0.2192 -6.7072 5.8100 38 1 1.6182 -6.1988 7.3683 39 1 3.5216 -4.8267 6.6216 40 1 3.5834 -3.9560 4.3191 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055015278.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:33 Heat of formation + Delta-G solvation = -1.465037 kcal Electronic energy + Delta-G solvation = -17953.794866 eV Core-core repulsion = 15346.165901 eV Total energy + Delta-G solvation = -2607.628965 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.60044 -36.95930 -34.99769 -32.30154 -30.91701 -30.15799 -28.08887 -27.03382 -25.96009 -22.90847 -22.15423 -21.29598 -19.89146 -19.48695 -17.20660 -16.19241 -15.24449 -14.85254 -14.54038 -14.37888 -13.88680 -13.75820 -13.54179 -12.89660 -12.74264 -12.64245 -12.21052 -12.09896 -12.00469 -11.62501 -11.43647 -11.41028 -11.06949 -10.95744 -10.51410 -10.48363 -10.36062 -10.10807 -10.01182 -9.84273 -9.41200 -8.73739 -8.19244 -7.90765 -7.28677 -6.25484 -4.27200 2.13899 2.20658 3.16165 3.24585 3.25554 4.25162 4.56373 4.92583 5.11286 5.13175 5.16848 5.44013 5.55432 5.59549 5.71324 5.73011 5.76689 5.90096 5.93264 5.99516 6.05581 6.12663 6.17400 6.25157 6.32193 6.41366 6.44737 6.46513 6.51772 6.72128 6.77122 6.85004 6.87357 7.16940 7.26132 7.40787 7.56808 7.79209 8.01443 8.27092 8.52571 8.79641 9.36820 10.87038 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.015761 B = 0.007721 C = 0.006036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.093696 B = 3625.502569 C = 4637.862502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.099 4.099 3 C -0.144 4.144 4 C -0.109 4.109 5 C 0.062 3.938 6 N -0.687 5.687 7 C 0.204 3.796 8 H 0.050 0.950 9 C -0.534 4.534 10 H 0.077 0.923 11 C 0.080 3.920 12 N -0.888 5.888 13 Si 0.870 3.130 14 H -0.272 1.272 15 H -0.286 1.286 16 H -0.263 1.263 17 C -0.015 4.015 18 C -0.134 4.134 19 C -0.123 4.123 20 C -0.151 4.151 21 C -0.126 4.126 22 C -0.104 4.104 23 H 0.052 0.948 24 H 0.047 0.953 25 H 0.057 0.943 26 H 0.068 0.932 27 H 0.052 0.948 28 H 0.049 0.951 29 H 0.052 0.948 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.035 0.965 33 H 0.056 0.944 34 H 0.332 0.668 35 H 0.266 0.734 36 H 0.110 0.890 37 H 0.109 0.891 38 H 0.108 0.892 39 H 0.109 0.891 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.544 8.734 4.807 10.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.118 4.118 3 C -0.201 4.201 4 C -0.147 4.147 5 C -0.068 4.068 6 N -0.316 5.316 7 C 0.096 3.904 8 H 0.067 0.933 9 C -0.573 4.573 10 H 0.095 0.905 11 C -0.125 4.125 12 N -0.525 5.525 13 Si 0.698 3.302 14 H -0.198 1.198 15 H -0.212 1.212 16 H -0.188 1.188 17 C -0.016 4.016 18 C -0.152 4.152 19 C -0.141 4.141 20 C -0.170 4.170 21 C -0.144 4.144 22 C -0.122 4.122 23 H 0.072 0.928 24 H 0.066 0.934 25 H 0.076 0.924 26 H 0.087 0.913 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.053 0.947 33 H 0.075 0.925 34 H 0.149 0.851 35 H 0.076 0.924 36 H 0.128 0.872 37 H 0.127 0.873 38 H 0.126 0.874 39 H 0.127 0.873 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -5.060 8.807 5.012 11.327 hybrid contribution -0.259 -0.726 -1.089 1.335 sum -5.319 8.081 3.923 10.440 Atomic orbital electron populations 1.21876 0.95612 1.01952 1.01019 1.21108 0.95757 0.95811 0.99079 1.21820 1.00826 0.96286 1.01182 1.21606 1.00472 0.95610 0.96999 1.21825 0.99210 0.92522 0.93248 1.61068 1.19045 1.13748 1.37781 1.18632 0.97001 0.85698 0.89067 0.93252 1.21518 0.95830 1.31876 1.08079 0.90462 1.25100 0.97214 0.94394 0.95769 1.69899 1.33517 1.34066 1.14989 0.86979 0.86214 0.78138 0.78901 1.19771 1.21227 1.18802 1.20283 0.91994 0.93583 0.95735 1.20999 0.98808 0.99785 0.95626 1.20929 0.98497 1.00543 0.94174 1.20839 0.95560 1.01530 0.99022 1.21018 0.98061 0.98913 0.96379 1.20833 0.98589 0.99912 0.92891 0.92842 0.93364 0.92357 0.91335 0.92854 0.93201 0.92914 0.91791 0.92372 0.94665 0.92520 0.85090 0.92382 0.87193 0.87321 0.87435 0.87269 0.86733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 8.95 37.16 0.33 -1.56 16 2 C -0.10 -1.33 2.92 -90.62 -0.26 -1.59 16 3 C -0.14 -1.62 9.19 37.16 0.34 -1.28 16 4 C -0.11 -1.66 4.94 -26.73 -0.13 -1.79 16 5 C 0.06 1.17 5.24 -3.83 -0.02 1.15 16 6 N -0.69 -14.00 5.85 -109.19 -0.64 -14.64 16 7 C 0.20 4.70 2.15 -70.01 -0.15 4.55 16 8 H 0.05 1.18 4.15 -51.93 -0.22 0.96 16 9 C -0.53 -14.32 8.55 -34.44 -0.29 -14.61 16 10 H 0.08 2.27 8.06 -52.48 -0.42 1.84 16 11 C 0.08 2.21 5.47 -17.82 -0.10 2.12 16 12 N -0.89 -26.27 13.96 55.43 0.77 -25.50 16 13 Si 0.87 20.93 27.02 -169.99 -4.59 16.34 16 14 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 15 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 16 H -0.26 -6.07 6.34 56.52 0.36 -5.71 16 17 C -0.01 -0.32 4.93 -104.62 -0.52 -0.84 16 18 C -0.13 -2.72 9.67 -39.58 -0.38 -3.11 16 19 C -0.12 -2.17 10.05 -39.58 -0.40 -2.57 16 20 C -0.15 -2.52 10.05 -39.58 -0.40 -2.92 16 21 C -0.13 -2.18 10.05 -39.58 -0.40 -2.58 16 22 C -0.10 -2.06 9.27 -39.58 -0.37 -2.43 16 23 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 25 H 0.06 0.82 6.57 -51.93 -0.34 0.48 16 26 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.04 0.76 7.97 -51.93 -0.41 0.34 16 33 H 0.06 1.08 6.48 -51.93 -0.34 0.74 16 34 H 0.33 6.70 7.91 -39.29 -0.31 6.39 16 35 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 36 H 0.11 2.21 7.64 -52.48 -0.40 1.81 16 37 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 38 H 0.11 1.47 8.06 -52.48 -0.42 1.05 16 39 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 40 H 0.11 2.19 7.45 -52.49 -0.39 1.80 16 LS Contribution 322.63 15.07 4.86 4.86 Total: -1.00 -28.45 322.63 -9.00 -37.46 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -6.66 Total: 8.95 kcal Atomic # 6 Polarization: -24.72 SS G_CDS: -2.74 Total: -27.47 kcal Atomic # 7 Polarization: -40.28 SS G_CDS: 0.13 Total: -40.14 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.59 Total: 16.34 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -28.45 -9.00 -37.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055015278.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.991 kcal (2) G-P(sol) polarization free energy of solvation -28.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds