Wall clock time and date at job start Mon Mar 30 2020 05:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46947 * 2 1 4 4 C 1.53003 * 109.46993 * 119.99548 * 2 1 3 5 5 C 1.53005 * 109.47035 * 65.00705 * 4 2 1 6 6 N 1.46888 * 109.47042 * 179.97438 * 5 4 2 7 7 C 1.46905 * 110.99999 * 179.97438 * 6 5 4 8 8 H 1.08999 * 109.46623 * 324.28399 * 7 6 5 9 9 C 1.50697 * 109.47089 * 84.28477 * 7 6 5 10 10 H 1.08003 * 119.99725 * 60.78166 * 9 7 6 11 11 C 1.37875 * 119.99998 * 240.77535 * 9 7 6 12 12 N 1.31520 * 119.99975 * 174.87200 * 11 9 7 13 13 Si 1.86791 * 120.00168 * 354.87445 * 11 9 7 14 14 H 1.48501 * 109.47457 * 84.75130 * 13 11 9 15 15 H 1.48502 * 109.47221 * 204.75053 * 13 11 9 16 16 H 1.48500 * 109.47160 * 324.75044 * 13 11 9 17 17 C 1.50704 * 109.47071 * 204.28583 * 7 6 5 18 18 C 1.38240 * 119.99794 * 133.72161 * 17 7 6 19 19 C 1.38233 * 120.00052 * 180.02562 * 18 17 7 20 20 C 1.38236 * 119.99764 * 359.95096 * 19 18 17 21 21 C 1.38238 * 120.00291 * 0.02562 * 20 19 18 22 22 C 1.38230 * 119.99957 * 313.69974 * 17 7 6 23 23 H 1.08993 * 109.47538 * 299.99994 * 1 2 3 24 24 H 1.08997 * 109.47111 * 60.00700 * 1 2 3 25 25 H 1.09007 * 109.46785 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47082 * 240.00191 * 2 1 3 27 27 H 1.08998 * 109.47149 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.46899 * 300.00068 * 3 2 1 29 29 H 1.09002 * 109.47110 * 59.99453 * 3 2 1 30 30 H 1.08998 * 109.47393 * 305.00149 * 4 2 1 31 31 H 1.09004 * 109.46509 * 184.99830 * 4 2 1 32 32 H 1.09001 * 109.46987 * 59.99480 * 5 4 2 33 33 H 1.09005 * 109.46419 * 299.99666 * 5 4 2 34 34 H 1.00897 * 111.00421 * 303.94685 * 6 5 4 35 35 H 0.97000 * 120.00029 * 180.02562 * 12 11 9 36 36 H 1.08005 * 119.99668 * 359.97438 * 18 17 7 37 37 H 1.07992 * 120.00182 * 179.97438 * 19 18 17 38 38 H 1.08003 * 119.99804 * 179.72653 * 20 19 18 39 39 H 1.07994 * 119.99974 * 179.97438 * 21 20 19 40 40 H 1.07992 * 120.00119 * 359.97438 * 22 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6353 -2.1955 1.1881 6 7 2.1255 -2.8880 2.3872 7 6 1.7541 -4.3091 2.3632 8 1 0.7707 -4.4199 1.9064 9 6 2.7704 -5.0803 1.5611 10 1 3.8044 -5.0969 1.8726 11 6 2.3801 -5.7649 0.4297 12 7 3.2811 -6.3539 -0.3260 13 14 0.5719 -5.8559 -0.0297 14 1 0.1952 -4.6435 -0.8000 15 1 0.3322 -7.0638 -0.8597 16 1 -0.2493 -5.9329 1.2051 17 6 1.7165 -4.8423 3.7722 18 6 0.6494 -5.6151 4.1905 19 6 0.6146 -6.1039 5.4831 20 6 1.6475 -5.8206 6.3571 21 6 2.7149 -5.0482 5.9387 22 6 2.7494 -4.5591 4.6462 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 3.1300 1.4426 0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6765 1.9564 0.8899 30 1 1.6054 -0.2616 2.1370 31 1 3.1263 -0.6442 1.2951 32 1 2.0700 -2.6549 0.3003 33 1 0.5490 -2.2723 1.1421 34 1 3.1233 -2.7764 2.4868 35 1 3.0066 -6.8352 -1.1222 36 1 -0.1576 -5.8364 3.5076 37 1 -0.2192 -6.7072 5.8100 38 1 1.6182 -6.1988 7.3683 39 1 3.5216 -4.8267 6.6216 40 1 3.5834 -3.9560 4.3191 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055015278.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:33 Heat of formation + Delta-G solvation = -17.441244 kcal Electronic energy + Delta-G solvation = -17954.487646 eV Core-core repulsion = 15346.165901 eV Total energy + Delta-G solvation = -2608.321745 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.11281 -38.29185 -36.51658 -34.31445 -32.42750 -31.59368 -29.57370 -28.03478 -27.72654 -24.57276 -23.63106 -22.73481 -21.44637 -20.74267 -19.26825 -17.63824 -16.90219 -16.39845 -16.07279 -15.83382 -15.26553 -15.08702 -14.91908 -14.78380 -14.18296 -14.00669 -13.74194 -13.64925 -13.23069 -13.02201 -12.97878 -12.83593 -12.62319 -12.30480 -12.06585 -11.86164 -11.79080 -11.49871 -11.43899 -11.36035 -11.29873 -10.80762 -9.63803 -9.44331 -9.02636 -8.40959 -6.45383 0.68280 0.74564 1.22849 1.25103 1.33568 2.21775 2.91148 3.16781 3.54493 3.99103 4.06725 4.14821 4.16660 4.29123 4.37946 4.44276 4.54822 4.61053 4.65006 4.79078 4.81709 4.85858 4.90892 4.93424 5.01595 5.07218 5.18798 5.21474 5.29497 5.34019 5.39042 5.43424 5.49880 5.55542 5.75208 5.79738 5.97477 6.05259 6.31873 6.41801 6.61165 6.75039 7.22166 8.75309 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.015761 B = 0.007721 C = 0.006036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.093696 B = 3625.502569 C = 4637.862502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.099 4.099 3 C -0.138 4.138 4 C -0.099 4.099 5 C 0.063 3.937 6 N -0.676 5.676 7 C 0.211 3.789 8 H 0.041 0.959 9 C -0.529 4.529 10 H 0.037 0.963 11 C 0.026 3.974 12 N -0.937 5.937 13 Si 0.925 3.075 14 H -0.263 1.263 15 H -0.284 1.284 16 H -0.247 1.247 17 C -0.049 4.049 18 C -0.155 4.155 19 C -0.121 4.121 20 C -0.142 4.142 21 C -0.124 4.124 22 C -0.121 4.121 23 H 0.063 0.937 24 H 0.064 0.936 25 H 0.039 0.961 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.057 0.943 32 H 0.002 0.998 33 H 0.057 0.943 34 H 0.331 0.669 35 H 0.267 0.733 36 H 0.105 0.895 37 H 0.141 0.859 38 H 0.148 0.852 39 H 0.141 0.859 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.127 9.677 6.833 13.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.119 4.119 3 C -0.196 4.196 4 C -0.137 4.137 5 C -0.067 4.067 6 N -0.305 5.305 7 C 0.103 3.897 8 H 0.059 0.941 9 C -0.568 4.568 10 H 0.055 0.945 11 C -0.174 4.174 12 N -0.577 5.577 13 Si 0.749 3.251 14 H -0.188 1.188 15 H -0.210 1.210 16 H -0.171 1.171 17 C -0.050 4.050 18 C -0.174 4.174 19 C -0.139 4.139 20 C -0.160 4.160 21 C -0.142 4.142 22 C -0.140 4.140 23 H 0.082 0.918 24 H 0.083 0.917 25 H 0.058 0.942 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.076 0.924 32 H 0.021 0.979 33 H 0.075 0.925 34 H 0.148 0.852 35 H 0.076 0.924 36 H 0.123 0.877 37 H 0.159 0.841 38 H 0.166 0.834 39 H 0.159 0.841 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -6.650 9.770 7.056 13.765 hybrid contribution 0.308 -1.008 -1.591 1.908 sum -6.343 8.762 5.465 12.119 Atomic orbital electron populations 1.21864 0.94893 1.01178 1.02380 1.21115 0.96412 0.97033 0.97299 1.21767 1.00896 0.94529 1.02367 1.21532 1.00551 0.93034 0.98541 1.21894 0.98951 0.94646 0.91166 1.61088 1.18943 1.12262 1.38211 1.18474 0.95090 0.86279 0.89897 0.94077 1.21688 0.95065 1.31609 1.08445 0.94459 1.25862 1.01393 0.94310 0.95846 1.70036 1.35664 1.36030 1.15936 0.86086 0.81374 0.78379 0.79233 1.18790 1.21022 1.17145 1.20247 0.93883 0.95507 0.95380 1.21140 0.98553 1.00444 0.97226 1.21311 0.99759 0.99913 0.92936 1.21339 0.94244 0.99836 1.00585 1.21396 0.99239 0.97996 0.95558 1.20933 0.98126 1.00753 0.94168 0.91786 0.91738 0.94157 0.92763 0.92769 0.91829 0.91918 0.90803 0.92418 0.97945 0.92463 0.85189 0.92397 0.87675 0.84083 0.83399 0.84147 0.87311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.52 8.95 71.98 0.64 -2.88 16 2 C -0.10 -2.58 2.92 -10.79 -0.03 -2.61 16 3 C -0.14 -2.83 9.19 71.98 0.66 -2.17 16 4 C -0.10 -2.97 4.94 30.60 0.15 -2.81 16 5 C 0.06 2.44 5.24 86.31 0.45 2.89 16 6 N -0.68 -28.19 5.85 -499.36 -2.92 -31.12 16 7 C 0.21 9.96 2.15 43.42 0.09 10.06 16 8 H 0.04 1.99 4.15 -2.39 -0.01 1.98 16 9 C -0.53 -29.66 8.55 25.60 0.22 -29.45 16 10 H 0.04 2.33 8.06 -2.91 -0.02 2.31 16 11 C 0.03 1.47 5.47 84.65 0.46 1.93 16 12 N -0.94 -57.91 13.96 21.45 0.30 -57.61 16 13 Si 0.92 44.06 27.02 68.60 1.85 45.92 16 14 H -0.26 -12.02 7.11 99.48 0.71 -11.31 16 15 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 16 H -0.25 -11.06 6.34 99.48 0.63 -10.43 16 17 C -0.05 -2.14 4.93 -19.86 -0.10 -2.24 16 18 C -0.15 -6.15 9.67 22.27 0.22 -5.93 16 19 C -0.12 -3.89 10.05 22.27 0.22 -3.67 16 20 C -0.14 -4.16 10.05 22.27 0.22 -3.93 16 21 C -0.12 -3.97 10.05 22.27 0.22 -3.75 16 22 C -0.12 -4.76 9.27 22.27 0.21 -4.56 16 23 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 24 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.04 1.10 6.57 -2.38 -0.02 1.09 16 26 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.05 1.09 8.14 -2.39 -0.02 1.08 16 28 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.00 0.10 7.97 -2.39 -0.02 0.08 16 33 H 0.06 2.19 6.48 -2.38 -0.02 2.18 16 34 H 0.33 13.87 7.91 -89.70 -0.71 13.16 16 35 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 36 H 0.11 4.15 7.64 -2.91 -0.02 4.13 16 37 H 0.14 3.55 8.06 -2.91 -0.02 3.53 16 38 H 0.15 3.17 8.06 -2.91 -0.02 3.14 16 39 H 0.14 3.56 8.06 -2.91 -0.02 3.54 16 40 H 0.11 4.25 7.45 -2.91 -0.02 4.23 16 Total: -1.00 -63.97 322.63 3.09 -60.88 By element: Atomic # 1 Polarization: 30.84 SS G_CDS: 0.21 Total: 31.05 kcal Atomic # 6 Polarization: -52.77 SS G_CDS: 3.65 Total: -49.12 kcal Atomic # 7 Polarization: -86.11 SS G_CDS: -2.62 Total: -88.73 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 1.85 Total: 45.92 kcal Total: -63.97 3.09 -60.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055015278.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.442 kcal (2) G-P(sol) polarization free energy of solvation -63.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds