Wall clock time and date at job start Mon Mar 30 2020 05:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47240 * 2 1 4 4 C 1.53004 * 109.46949 * 119.99651 * 2 1 3 5 5 C 1.53005 * 109.46771 * 174.99790 * 4 2 1 6 6 N 1.46908 * 109.46873 * 179.97438 * 5 4 2 7 7 C 1.46897 * 110.99645 * 180.02562 * 6 5 4 8 8 H 1.08999 * 109.47351 * 35.00251 * 7 6 5 9 9 C 1.50700 * 109.47297 * 275.00254 * 7 6 5 10 10 H 1.08005 * 120.00210 * 122.44097 * 9 7 6 11 11 C 1.37877 * 119.99868 * 302.16845 * 9 7 6 12 12 N 1.31511 * 120.00288 * 6.24542 * 11 9 7 13 13 Si 1.86800 * 119.99916 * 186.24120 * 11 9 7 14 14 H 1.48504 * 109.47090 * 90.00170 * 13 11 9 15 15 H 1.48503 * 109.47466 * 210.00016 * 13 11 9 16 16 H 1.48498 * 109.47315 * 330.00071 * 13 11 9 17 17 C 1.50703 * 109.47139 * 155.00720 * 7 6 5 18 18 C 1.38237 * 119.99639 * 30.24542 * 17 7 6 19 19 C 1.38239 * 119.99322 * 179.81808 * 18 17 7 20 20 C 1.38234 * 120.00401 * 0.39071 * 19 18 17 21 21 C 1.38234 * 119.99929 * 359.86701 * 20 19 18 22 22 C 1.38234 * 119.99881 * 359.94827 * 21 20 19 23 23 H 1.09005 * 109.46911 * 300.00183 * 1 2 3 24 24 H 1.09000 * 109.47066 * 59.99765 * 1 2 3 25 25 H 1.09000 * 109.47219 * 180.02562 * 1 2 3 26 26 H 1.08992 * 109.47259 * 239.99847 * 2 1 3 27 27 H 1.09007 * 109.46911 * 300.00267 * 3 2 1 28 28 H 1.09002 * 109.47123 * 59.99577 * 3 2 1 29 29 H 1.09001 * 109.47085 * 180.02562 * 3 2 1 30 30 H 1.08999 * 109.47087 * 55.00204 * 4 2 1 31 31 H 1.08997 * 109.47178 * 294.99664 * 4 2 1 32 32 H 1.08999 * 109.46977 * 60.00346 * 5 4 2 33 33 H 1.08994 * 109.47727 * 300.00374 * 5 4 2 34 34 H 1.00901 * 110.99746 * 56.05355 * 6 5 4 35 35 H 0.97001 * 120.00149 * 180.02562 * 12 11 9 36 36 H 1.07996 * 120.00223 * 359.97438 * 18 17 7 37 37 H 1.08000 * 119.99381 * 180.23121 * 19 18 17 38 38 H 1.07993 * 119.99994 * 179.83426 * 20 19 18 39 39 H 1.07999 * 120.00075 * 179.97438 * 21 20 19 40 40 H 1.08001 * 120.00134 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.8310 1.1880 6 7 4.0546 -1.5229 2.3878 7 6 5.5181 -1.6464 2.3637 8 1 5.9497 -0.7622 1.8947 9 6 5.9060 -2.8720 1.5774 10 1 6.5552 -2.7799 0.7191 11 6 5.4368 -4.1117 1.9570 12 7 4.5549 -4.2121 2.9274 13 14 6.0537 -5.6486 1.0928 14 1 7.2558 -6.1634 1.7964 15 1 4.9902 -6.6850 1.1067 16 1 6.4054 -5.3193 -0.3119 17 6 6.0351 -1.7700 3.7739 18 6 5.2536 -2.3644 4.7469 19 6 5.7294 -2.4811 6.0396 20 6 6.9833 -1.9963 6.3610 21 6 7.7627 -1.3971 5.3892 22 6 7.2885 -1.2838 4.0957 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8899 27 1 1.6766 1.9564 -0.8900 28 1 1.6766 1.9564 0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6054 -1.7197 1.2953 31 1 1.7516 -0.1582 2.1370 32 1 3.9994 0.1675 1.1421 33 1 3.8532 -1.3939 0.3003 34 1 3.6168 -2.4265 2.4881 35 1 4.2251 -5.0843 3.1947 36 1 4.2724 -2.7398 4.4966 37 1 5.1203 -2.9489 6.7989 38 1 7.3539 -2.0851 7.3715 39 1 8.7422 -1.0179 5.6404 40 1 7.8975 -0.8160 3.3363 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055015281.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:36 Heat of formation + Delta-G solvation = 3.761514 kcal Electronic energy + Delta-G solvation = -18139.093140 eV Core-core repulsion = 15531.690816 eV Total energy + Delta-G solvation = -2607.402325 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.22417 -36.75480 -34.90395 -31.96602 -30.43583 -29.65675 -27.72750 -26.95112 -25.78665 -22.82584 -21.75096 -20.87759 -19.84641 -19.43078 -16.57020 -15.86090 -15.11534 -14.82460 -14.20939 -14.00894 -13.66567 -13.55466 -13.45679 -12.64584 -12.36428 -12.30093 -12.02667 -11.90469 -11.61611 -11.33875 -11.22093 -11.02113 -10.97166 -10.74881 -10.52285 -10.25761 -10.15943 -10.10911 -9.76073 -9.56131 -9.47878 -8.69442 -7.76923 -7.39098 -6.96407 -6.04946 -4.29934 2.55344 2.66593 3.21655 3.28956 3.31386 4.29906 4.98180 5.11136 5.14708 5.21029 5.26980 5.73143 5.79151 5.85843 5.88788 5.98045 6.01431 6.03227 6.11416 6.18479 6.21695 6.34424 6.43705 6.49970 6.58997 6.61195 6.77244 6.83023 6.91301 6.97111 7.03047 7.20043 7.34117 7.57162 7.66477 7.83014 8.02876 8.09629 8.28782 8.47761 8.87512 9.18237 9.44743 10.80564 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.016492 B = 0.007511 C = 0.005869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.428082 B = 3727.129014 C = 4769.635918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.097 4.097 3 C -0.145 4.145 4 C -0.109 4.109 5 C 0.068 3.932 6 N -0.692 5.692 7 C 0.238 3.762 8 H 0.033 0.967 9 C -0.540 4.540 10 H 0.056 0.944 11 C 0.073 3.927 12 N -0.878 5.878 13 Si 0.892 3.108 14 H -0.279 1.279 15 H -0.285 1.285 16 H -0.275 1.275 17 C -0.018 4.018 18 C -0.057 4.057 19 C -0.148 4.148 20 C -0.154 4.154 21 C -0.144 4.144 22 C -0.135 4.135 23 H 0.052 0.948 24 H 0.047 0.953 25 H 0.052 0.948 26 H 0.065 0.935 27 H 0.045 0.955 28 H 0.052 0.948 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.062 0.938 32 H 0.050 0.950 33 H 0.021 0.979 34 H 0.367 0.633 35 H 0.267 0.733 36 H 0.146 0.854 37 H 0.101 0.899 38 H 0.098 0.902 39 H 0.100 0.900 40 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.767 5.732 -0.862 6.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.116 4.116 3 C -0.203 4.203 4 C -0.147 4.147 5 C -0.063 4.063 6 N -0.330 5.330 7 C 0.129 3.871 8 H 0.051 0.949 9 C -0.579 4.579 10 H 0.075 0.925 11 C -0.130 4.130 12 N -0.516 5.516 13 Si 0.720 3.280 14 H -0.205 1.205 15 H -0.211 1.211 16 H -0.200 1.200 17 C -0.019 4.019 18 C -0.076 4.076 19 C -0.166 4.166 20 C -0.172 4.172 21 C -0.162 4.162 22 C -0.154 4.154 23 H 0.071 0.929 24 H 0.067 0.933 25 H 0.071 0.929 26 H 0.084 0.916 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.039 0.961 34 H 0.193 0.807 35 H 0.078 0.922 36 H 0.164 0.836 37 H 0.119 0.881 38 H 0.117 0.883 39 H 0.119 0.881 40 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -3.891 6.137 -0.385 7.276 hybrid contribution 0.708 -1.795 -1.043 2.193 sum -3.183 4.342 -1.428 5.570 Atomic orbital electron populations 1.21830 0.95909 1.01382 1.01073 1.21101 0.95006 0.96343 0.99130 1.21865 1.01517 0.96049 1.00843 1.21598 0.96678 0.99833 0.96613 1.21734 0.93053 0.97890 0.93590 1.60947 1.07613 1.28890 1.35514 1.18071 0.86075 0.94319 0.88651 0.94868 1.21712 1.30937 0.92431 1.12779 0.92529 1.24968 0.94486 0.98974 0.94536 1.69498 1.29205 1.24613 1.28308 0.86586 0.78800 0.82699 0.79935 1.20497 1.21086 1.19989 1.20213 0.92567 0.92969 0.96201 1.21415 1.01675 0.94165 0.90340 1.21105 0.96112 1.02042 0.97329 1.20761 0.95812 1.02565 0.98060 1.20749 0.98951 1.02530 0.93969 1.20854 0.96675 1.02371 0.95503 0.92908 0.93347 0.92927 0.91617 0.93596 0.92913 0.92254 0.92583 0.91952 0.93202 0.96094 0.80736 0.92245 0.83622 0.88130 0.88348 0.88149 0.87893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.19 37.16 0.34 -1.39 16 2 C -0.10 -1.34 2.92 -90.62 -0.26 -1.61 16 3 C -0.15 -1.86 8.95 37.16 0.33 -1.53 16 4 C -0.11 -1.83 4.94 -26.73 -0.13 -1.96 16 5 C 0.07 1.34 5.23 -3.82 -0.02 1.32 16 6 N -0.69 -15.84 5.42 -109.18 -0.59 -16.43 16 7 C 0.24 5.79 2.51 -70.02 -0.18 5.62 16 8 H 0.03 0.80 7.74 -51.93 -0.40 0.40 16 9 C -0.54 -14.14 8.62 -34.44 -0.30 -14.44 16 10 H 0.06 1.50 7.82 -52.48 -0.41 1.09 16 11 C 0.07 1.90 5.09 -17.82 -0.09 1.80 16 12 N -0.88 -22.46 7.93 55.43 0.44 -22.02 16 13 Si 0.89 20.63 29.54 -169.99 -5.02 15.61 16 14 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 15 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 16 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 17 C -0.02 -0.44 4.77 -104.62 -0.50 -0.94 16 18 C -0.06 -1.35 7.75 -39.58 -0.31 -1.65 16 19 C -0.15 -3.11 10.05 -39.58 -0.40 -3.51 16 20 C -0.15 -3.02 10.05 -39.58 -0.40 -3.42 16 21 C -0.14 -2.86 10.05 -39.58 -0.40 -3.26 16 22 C -0.14 -2.97 9.70 -39.58 -0.38 -3.36 16 23 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.80 6.57 -51.93 -0.34 0.46 16 30 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.05 0.95 6.48 -51.93 -0.34 0.62 16 33 H 0.02 0.45 8.00 -51.93 -0.42 0.03 16 34 H 0.37 8.96 5.48 -39.29 -0.22 8.75 16 35 H 0.27 6.62 8.31 -40.82 -0.34 6.29 16 36 H 0.15 3.59 5.55 -52.49 -0.29 3.30 16 37 H 0.10 1.88 8.06 -52.49 -0.42 1.46 16 38 H 0.10 1.64 8.06 -52.49 -0.42 1.22 16 39 H 0.10 1.70 8.06 -52.49 -0.42 1.27 16 40 H 0.10 2.10 8.06 -52.49 -0.42 1.67 16 LS Contribution 317.34 15.07 4.78 4.78 Total: -1.00 -25.87 317.34 -9.70 -35.58 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: -6.62 Total: 10.79 kcal Atomic # 6 Polarization: -25.63 SS G_CDS: -2.69 Total: -28.31 kcal Atomic # 7 Polarization: -38.29 SS G_CDS: -0.15 Total: -38.45 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -25.87 -9.70 -35.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055015281.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.337 kcal (2) G-P(sol) polarization free energy of solvation -25.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds