Wall clock time and date at job start Mon Mar 30 2020 05:57:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47240 * 2 1 4 4 C 1.53004 * 109.46949 * 119.99651 * 2 1 3 5 5 C 1.53005 * 109.46771 * 174.99790 * 4 2 1 6 6 N 1.46908 * 109.46873 * 179.97438 * 5 4 2 7 7 C 1.46897 * 110.99645 * 180.02562 * 6 5 4 8 8 H 1.08999 * 109.47351 * 35.00251 * 7 6 5 9 9 C 1.50700 * 109.47297 * 275.00254 * 7 6 5 10 10 H 1.08005 * 120.00210 * 122.44097 * 9 7 6 11 11 C 1.37877 * 119.99868 * 302.16845 * 9 7 6 12 12 N 1.31511 * 120.00288 * 6.24542 * 11 9 7 13 13 Si 1.86800 * 119.99916 * 186.24120 * 11 9 7 14 14 H 1.48504 * 109.47090 * 90.00170 * 13 11 9 15 15 H 1.48503 * 109.47466 * 210.00016 * 13 11 9 16 16 H 1.48498 * 109.47315 * 330.00071 * 13 11 9 17 17 C 1.50703 * 109.47139 * 155.00720 * 7 6 5 18 18 C 1.38237 * 119.99639 * 30.24542 * 17 7 6 19 19 C 1.38239 * 119.99322 * 179.81808 * 18 17 7 20 20 C 1.38234 * 120.00401 * 0.39071 * 19 18 17 21 21 C 1.38234 * 119.99929 * 359.86701 * 20 19 18 22 22 C 1.38234 * 119.99881 * 359.94827 * 21 20 19 23 23 H 1.09005 * 109.46911 * 300.00183 * 1 2 3 24 24 H 1.09000 * 109.47066 * 59.99765 * 1 2 3 25 25 H 1.09000 * 109.47219 * 180.02562 * 1 2 3 26 26 H 1.08992 * 109.47259 * 239.99847 * 2 1 3 27 27 H 1.09007 * 109.46911 * 300.00267 * 3 2 1 28 28 H 1.09002 * 109.47123 * 59.99577 * 3 2 1 29 29 H 1.09001 * 109.47085 * 180.02562 * 3 2 1 30 30 H 1.08999 * 109.47087 * 55.00204 * 4 2 1 31 31 H 1.08997 * 109.47178 * 294.99664 * 4 2 1 32 32 H 1.08999 * 109.46977 * 60.00346 * 5 4 2 33 33 H 1.08994 * 109.47727 * 300.00374 * 5 4 2 34 34 H 1.00901 * 110.99746 * 56.05355 * 6 5 4 35 35 H 0.97001 * 120.00149 * 180.02562 * 12 11 9 36 36 H 1.07996 * 120.00223 * 359.97438 * 18 17 7 37 37 H 1.08000 * 119.99381 * 180.23121 * 19 18 17 38 38 H 1.07993 * 119.99994 * 179.83426 * 20 19 18 39 39 H 1.07999 * 120.00075 * 179.97438 * 21 20 19 40 40 H 1.08001 * 120.00134 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.8310 1.1880 6 7 4.0546 -1.5229 2.3878 7 6 5.5181 -1.6464 2.3637 8 1 5.9497 -0.7622 1.8947 9 6 5.9060 -2.8720 1.5774 10 1 6.5552 -2.7799 0.7191 11 6 5.4368 -4.1117 1.9570 12 7 4.5549 -4.2121 2.9274 13 14 6.0537 -5.6486 1.0928 14 1 7.2558 -6.1634 1.7964 15 1 4.9902 -6.6850 1.1067 16 1 6.4054 -5.3193 -0.3119 17 6 6.0351 -1.7700 3.7739 18 6 5.2536 -2.3644 4.7469 19 6 5.7294 -2.4811 6.0396 20 6 6.9833 -1.9963 6.3610 21 6 7.7627 -1.3971 5.3892 22 6 7.2885 -1.2838 4.0957 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8899 27 1 1.6766 1.9564 -0.8900 28 1 1.6766 1.9564 0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6054 -1.7197 1.2953 31 1 1.7516 -0.1582 2.1370 32 1 3.9994 0.1675 1.1421 33 1 3.8532 -1.3939 0.3003 34 1 3.6168 -2.4265 2.4881 35 1 4.2251 -5.0843 3.1947 36 1 4.2724 -2.7398 4.4966 37 1 5.1203 -2.9489 6.7989 38 1 7.3539 -2.0851 7.3715 39 1 8.7422 -1.0179 5.6404 40 1 7.8975 -0.8160 3.3363 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055015281.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:35 Heat of formation + Delta-G solvation = -7.966663 kcal Electronic energy + Delta-G solvation = -18139.601712 eV Core-core repulsion = 15531.690816 eV Total energy + Delta-G solvation = -2607.910897 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.91608 -38.15185 -36.51781 -33.79254 -32.09480 -31.30793 -29.31359 -27.98348 -27.56498 -24.56274 -23.37182 -22.46824 -21.55603 -20.70800 -18.49863 -17.51134 -16.90696 -16.26147 -15.80082 -15.63500 -15.21583 -14.95945 -14.89351 -14.29652 -13.94532 -13.77521 -13.58893 -13.32471 -13.07006 -12.90633 -12.78169 -12.58288 -12.53290 -12.37125 -12.16618 -11.82603 -11.54028 -11.45200 -11.37104 -11.26868 -11.15611 -10.63170 -9.43669 -9.11247 -8.82398 -7.97965 -6.31935 0.87453 1.01436 1.35405 1.38992 1.45501 2.37083 3.06347 3.37886 3.78008 4.05728 4.14316 4.28968 4.38215 4.39737 4.52822 4.62667 4.73084 4.79496 4.83672 4.86426 4.92937 4.94289 5.03915 5.10823 5.15025 5.22382 5.28692 5.31351 5.38915 5.51507 5.55044 5.59871 5.64213 5.69836 5.91512 6.08328 6.09171 6.37097 6.51714 6.60682 6.99064 7.24174 7.46007 8.82249 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.016492 B = 0.007511 C = 0.005869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.428082 B = 3727.129014 C = 4769.635918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.095 4.095 3 C -0.143 4.143 4 C -0.099 4.099 5 C 0.070 3.930 6 N -0.693 5.693 7 C 0.237 3.763 8 H 0.022 0.978 9 C -0.563 4.563 10 H 0.041 0.959 11 C 0.041 3.959 12 N -0.881 5.881 13 Si 0.943 3.057 14 H -0.282 1.282 15 H -0.278 1.278 16 H -0.277 1.277 17 C -0.046 4.046 18 C -0.078 4.078 19 C -0.154 4.154 20 C -0.149 4.149 21 C -0.140 4.140 22 C -0.152 4.152 23 H 0.057 0.943 24 H 0.066 0.934 25 H 0.050 0.950 26 H 0.059 0.941 27 H 0.066 0.934 28 H 0.056 0.944 29 H 0.045 0.955 30 H 0.044 0.956 31 H 0.063 0.937 32 H 0.055 0.945 33 H -0.001 1.001 34 H 0.357 0.643 35 H 0.267 0.733 36 H 0.127 0.873 37 H 0.122 0.878 38 H 0.137 0.863 39 H 0.136 0.864 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.690 6.040 -0.001 7.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.114 4.114 3 C -0.200 4.200 4 C -0.137 4.137 5 C -0.060 4.060 6 N -0.329 5.329 7 C 0.128 3.872 8 H 0.040 0.960 9 C -0.602 4.602 10 H 0.059 0.941 11 C -0.162 4.162 12 N -0.519 5.519 13 Si 0.770 3.230 14 H -0.208 1.208 15 H -0.203 1.203 16 H -0.202 1.202 17 C -0.047 4.047 18 C -0.096 4.096 19 C -0.172 4.172 20 C -0.166 4.166 21 C -0.158 4.158 22 C -0.171 4.171 23 H 0.077 0.923 24 H 0.085 0.915 25 H 0.069 0.931 26 H 0.078 0.922 27 H 0.085 0.915 28 H 0.076 0.924 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.017 0.983 34 H 0.181 0.819 35 H 0.078 0.922 36 H 0.144 0.856 37 H 0.140 0.860 38 H 0.155 0.845 39 H 0.154 0.846 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -3.823 6.458 0.477 7.520 hybrid contribution 0.717 -1.852 -1.264 2.354 sum -3.106 4.606 -0.787 5.611 Atomic orbital electron populations 1.21787 0.93974 1.01694 1.02297 1.21081 0.96596 0.96611 0.97079 1.21837 1.00655 0.95389 1.02117 1.21511 0.94134 0.99685 0.98370 1.21797 0.95320 0.97282 0.91623 1.60985 1.06907 1.28226 1.36765 1.18021 0.86768 0.93113 0.89270 0.95963 1.21823 1.31453 0.93809 1.13078 0.94056 1.25473 0.94695 1.00762 0.95228 1.69617 1.29020 1.24867 1.28386 0.85799 0.78212 0.80173 0.78845 1.20842 1.20312 1.20198 1.20283 0.93805 0.94658 0.95957 1.21313 1.01204 0.95437 0.91686 1.21387 0.97208 1.01890 0.96722 1.21194 0.94850 1.00810 0.99795 1.21157 1.00333 1.01399 0.92888 1.21082 0.96205 1.02742 0.97042 0.92347 0.91453 0.93127 0.92229 0.91521 0.92441 0.93589 0.93754 0.91874 0.92704 0.98272 0.81858 0.92242 0.85563 0.86017 0.84535 0.84628 0.87294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 9.19 71.98 0.66 -2.45 16 2 C -0.09 -2.56 2.92 -10.79 -0.03 -2.59 16 3 C -0.14 -3.48 8.95 71.98 0.64 -2.84 16 4 C -0.10 -3.36 4.94 30.60 0.15 -3.21 16 5 C 0.07 2.87 5.23 86.30 0.45 3.32 16 6 N -0.69 -32.89 5.42 -499.34 -2.70 -35.60 16 7 C 0.24 11.99 2.51 43.42 0.11 12.10 16 8 H 0.02 1.12 7.74 -2.39 -0.02 1.10 16 9 C -0.56 -30.46 8.62 25.60 0.22 -30.24 16 10 H 0.04 2.28 7.82 -2.91 -0.02 2.26 16 11 C 0.04 2.14 5.09 84.66 0.43 2.57 16 12 N -0.88 -45.82 7.93 21.45 0.17 -45.65 16 13 Si 0.94 42.75 29.54 68.60 2.03 44.78 16 14 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 15 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 16 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 17 C -0.05 -2.23 4.77 -19.86 -0.09 -2.32 16 18 C -0.08 -3.67 7.75 22.27 0.17 -3.50 16 19 C -0.15 -6.23 10.05 22.27 0.22 -6.01 16 20 C -0.15 -5.36 10.05 22.27 0.22 -5.14 16 21 C -0.14 -5.19 10.05 22.27 0.22 -4.96 16 22 C -0.15 -6.60 9.70 22.27 0.22 -6.38 16 23 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 24 H 0.07 1.25 8.14 -2.39 -0.02 1.24 16 25 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 28 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.05 1.23 6.57 -2.39 -0.02 1.21 16 30 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.05 2.17 6.48 -2.39 -0.02 2.15 16 33 H 0.00 -0.04 8.00 -2.39 -0.02 -0.06 16 34 H 0.36 18.12 5.48 -89.69 -0.49 17.63 16 35 H 0.27 13.37 8.31 -92.71 -0.77 12.60 16 36 H 0.13 6.39 5.55 -2.91 -0.02 6.37 16 37 H 0.12 4.30 8.06 -2.91 -0.02 4.27 16 38 H 0.14 3.88 8.06 -2.91 -0.02 3.86 16 39 H 0.14 4.03 8.06 -2.91 -0.02 4.01 16 40 H 0.11 4.44 8.06 -2.91 -0.02 4.42 16 Total: -1.00 -55.82 317.34 3.60 -52.22 By element: Atomic # 1 Polarization: 35.38 SS G_CDS: 0.50 Total: 35.88 kcal Atomic # 6 Polarization: -55.25 SS G_CDS: 3.60 Total: -51.64 kcal Atomic # 7 Polarization: -78.71 SS G_CDS: -2.53 Total: -81.24 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -55.82 3.60 -52.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055015281.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.253 kcal (2) G-P(sol) polarization free energy of solvation -55.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds