Wall clock time and date at job start Mon Mar 30 2020 06:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47048 * 2 1 4 4 C 1.52996 * 109.47261 * 120.00439 * 2 1 3 5 5 H 1.09001 * 109.46933 * 300.00143 * 4 2 1 6 6 C 1.52999 * 109.47448 * 59.99806 * 4 2 1 7 7 N 1.46901 * 109.47258 * 180.02562 * 4 2 1 8 8 C 1.46900 * 111.00157 * 154.99671 * 7 4 2 9 9 H 1.09005 * 109.46891 * 325.00081 * 8 7 4 10 10 C 1.50696 * 109.47080 * 85.00135 * 8 7 4 11 11 H 1.08000 * 120.00574 * 34.46807 * 10 8 7 12 12 C 1.37876 * 120.00008 * 214.19783 * 10 8 7 13 13 N 1.31515 * 120.00126 * 354.69204 * 12 10 8 14 14 Si 1.86803 * 120.00156 * 174.68877 * 12 10 8 15 15 H 1.48505 * 109.47014 * 60.00218 * 14 12 10 16 16 H 1.48504 * 109.47301 * 179.97438 * 14 12 10 17 17 H 1.48495 * 109.47327 * 299.99986 * 14 12 10 18 18 C 1.50701 * 109.47223 * 205.00166 * 8 7 4 19 19 C 1.38236 * 119.99502 * 313.80310 * 18 8 7 20 20 C 1.38238 * 119.99531 * 179.78917 * 19 18 8 21 21 C 1.38229 * 120.00392 * 0.44348 * 20 19 18 22 22 C 1.38236 * 119.99788 * 359.81240 * 21 20 19 23 23 C 1.38232 * 120.00245 * 134.08076 * 18 8 7 24 24 H 1.09001 * 109.47264 * 299.99621 * 1 2 3 25 25 H 1.09001 * 109.47613 * 60.00024 * 1 2 3 26 26 H 1.09003 * 109.47314 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.46798 * 240.00411 * 2 1 3 28 28 H 1.09000 * 109.46551 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.47430 * 299.99874 * 3 2 1 30 30 H 1.08994 * 109.47134 * 60.00133 * 3 2 1 31 31 H 1.09000 * 109.47430 * 180.02562 * 6 4 2 32 32 H 1.09003 * 109.47205 * 300.00292 * 6 4 2 33 33 H 1.08999 * 109.47340 * 59.99748 * 6 4 2 34 34 H 1.00898 * 110.99890 * 31.04116 * 7 4 2 35 35 H 0.96998 * 120.00513 * 180.02562 * 13 12 10 36 36 H 1.08002 * 120.00417 * 0.02562 * 19 18 8 37 37 H 1.08002 * 120.00018 * 180.27886 * 20 19 18 38 38 H 1.07996 * 120.00878 * 179.83760 * 21 20 19 39 39 H 1.08004 * 120.00241 * 180.02562 * 22 21 20 40 40 H 1.07995 * 119.99992 * 359.97438 * 23 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.6766 -0.2075 2.1392 6 6 1.5300 -2.1638 1.2491 7 7 3.5090 -0.7208 1.2495 8 6 4.0352 -0.8403 2.6157 9 1 3.3792 -0.3093 3.3055 10 6 4.1001 -2.2951 3.0035 11 1 4.3345 -3.0424 2.2598 12 6 3.8658 -2.6717 4.3090 13 7 3.6890 -1.7557 5.2360 14 14 3.7993 -4.4830 4.7610 15 1 5.0976 -5.1237 4.4304 16 1 3.5363 -4.6208 6.2161 17 1 2.7119 -5.1445 3.9962 18 6 5.4172 -0.2423 2.6759 19 6 6.3460 -0.5488 1.6990 20 6 7.6123 0.0033 1.7519 21 6 7.9526 0.8544 2.7864 22 6 7.0255 1.1567 3.7662 23 6 5.7578 0.6082 3.7111 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 3.1299 1.4424 -0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6766 1.9563 0.8899 31 1 1.8930 -2.6776 2.1393 32 1 0.4400 -2.1638 1.2491 33 1 1.8932 -2.6776 0.3591 34 1 3.8704 0.1036 0.7936 35 1 3.5246 -2.0206 6.1545 36 1 6.0812 -1.2164 0.8925 37 1 8.3365 -0.2326 0.9862 38 1 8.9427 1.2837 2.8292 39 1 7.2913 1.8221 4.5744 40 1 5.0335 0.8443 4.4765 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055016229.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:08 Heat of formation + Delta-G solvation = 8.104407 kcal Electronic energy + Delta-G solvation = -18495.938754 eV Core-core repulsion = 15888.724751 eV Total energy + Delta-G solvation = -2607.214003 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.53865 -37.25945 -34.07290 -31.87143 -30.27813 -29.95392 -28.52871 -26.72190 -25.80352 -22.91477 -22.01501 -21.45154 -19.78823 -19.08935 -16.56982 -15.86218 -15.12752 -14.89785 -14.37560 -14.03448 -13.91339 -13.27953 -13.17743 -12.55173 -12.48892 -12.33319 -12.06829 -11.87763 -11.77831 -11.38957 -11.31885 -10.91607 -10.82642 -10.78974 -10.48499 -10.34514 -10.16954 -10.11043 -9.69402 -9.50381 -9.46208 -8.47831 -8.01098 -7.65552 -7.23524 -6.03874 -4.04612 2.32439 2.34920 3.31470 3.35659 3.39149 4.39881 4.73877 5.13132 5.26108 5.30550 5.31976 5.53880 5.68475 5.79639 5.85536 5.87846 6.00819 6.06258 6.15000 6.18483 6.30584 6.36457 6.44050 6.47007 6.50614 6.57796 6.65557 6.77245 6.93447 6.97832 7.01322 7.29242 7.34662 7.37750 7.45748 7.77222 7.87152 7.94980 8.21013 8.28343 8.77058 9.05188 9.56223 11.01187 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.013239 B = 0.010647 C = 0.006670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.404496 B = 2629.232759 C = 4196.931534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.101 4.101 3 C -0.149 4.149 4 C 0.106 3.894 5 H 0.033 0.967 6 C -0.138 4.138 7 N -0.683 5.683 8 C 0.237 3.763 9 H 0.039 0.961 10 C -0.478 4.478 11 H 0.063 0.937 12 C 0.061 3.939 13 N -0.888 5.888 14 Si 0.891 3.109 15 H -0.277 1.277 16 H -0.289 1.289 17 H -0.275 1.275 18 C -0.036 4.036 19 C -0.111 4.111 20 C -0.135 4.135 21 C -0.153 4.153 22 C -0.132 4.132 23 C -0.110 4.110 24 H 0.050 0.950 25 H 0.046 0.954 26 H 0.058 0.942 27 H 0.071 0.929 28 H 0.057 0.943 29 H 0.049 0.951 30 H 0.050 0.950 31 H 0.081 0.919 32 H 0.034 0.966 33 H 0.046 0.954 34 H 0.315 0.685 35 H 0.262 0.738 36 H 0.119 0.881 37 H 0.105 0.895 38 H 0.103 0.897 39 H 0.105 0.895 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.986 5.097 -6.967 8.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.120 4.120 3 C -0.207 4.207 4 C -0.005 4.005 5 H 0.051 0.949 6 C -0.196 4.196 7 N -0.316 5.316 8 C 0.130 3.870 9 H 0.057 0.943 10 C -0.516 4.516 11 H 0.081 0.919 12 C -0.142 4.142 13 N -0.526 5.526 14 Si 0.719 3.281 15 H -0.203 1.203 16 H -0.215 1.215 17 H -0.201 1.201 18 C -0.037 4.037 19 C -0.129 4.129 20 C -0.153 4.153 21 C -0.171 4.171 22 C -0.150 4.150 23 C -0.128 4.128 24 H 0.070 0.930 25 H 0.065 0.935 26 H 0.077 0.923 27 H 0.090 0.910 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.099 0.901 32 H 0.053 0.947 33 H 0.065 0.935 34 H 0.134 0.866 35 H 0.071 0.929 36 H 0.137 0.863 37 H 0.123 0.877 38 H 0.122 0.878 39 H 0.123 0.877 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -0.984 4.438 -6.884 8.249 hybrid contribution -0.030 -0.167 0.895 0.911 sum -1.015 4.271 -5.989 7.425 Atomic orbital electron populations 1.21847 0.95696 1.01756 1.00885 1.21333 0.95309 0.95645 0.99679 1.21884 1.01222 0.96536 1.01061 1.21313 0.88869 0.95804 0.94474 0.94865 1.21896 0.97524 0.96650 1.03539 1.60866 1.05634 1.43672 1.21391 1.18452 0.87511 0.96282 0.84764 0.94341 1.20928 1.46108 0.91068 0.93525 0.91908 1.25002 0.95130 0.97405 0.96615 1.69912 1.48500 1.32691 1.01514 0.86667 0.78713 0.85583 0.77136 1.20255 1.21462 1.20099 1.20738 0.99135 0.91359 0.92513 1.20994 0.92726 0.99533 0.99655 1.20988 0.96765 0.99046 0.98534 1.20809 0.98670 1.01169 0.96456 1.20984 0.94389 1.01046 0.98576 1.21102 0.96183 0.97119 0.98436 0.93044 0.93462 0.92288 0.91030 0.92401 0.93229 0.93050 0.90050 0.94685 0.93524 0.86633 0.92873 0.86287 0.87665 0.87843 0.87678 0.86413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 8.84 37.16 0.33 -1.57 16 2 C -0.10 -1.52 2.64 -90.62 -0.24 -1.75 16 3 C -0.15 -2.07 8.96 37.16 0.33 -1.74 16 4 C 0.11 1.98 2.23 -67.71 -0.15 1.83 16 5 H 0.03 0.70 7.43 -51.93 -0.39 0.31 16 6 C -0.14 -2.65 8.82 37.16 0.33 -2.32 16 7 N -0.68 -13.95 5.72 -102.18 -0.58 -14.53 16 8 C 0.24 5.62 2.27 -70.02 -0.16 5.46 16 9 H 0.04 1.03 6.49 -51.93 -0.34 0.69 16 10 C -0.48 -12.49 6.28 -34.44 -0.22 -12.71 16 11 H 0.06 1.69 7.82 -52.49 -0.41 1.28 16 12 C 0.06 1.64 5.45 -17.82 -0.10 1.54 16 13 N -0.89 -24.59 12.86 55.43 0.71 -23.88 16 14 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 15 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 16 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 17 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 18 C -0.04 -0.81 4.64 -104.62 -0.49 -1.30 16 19 C -0.11 -2.28 9.08 -39.58 -0.36 -2.64 16 20 C -0.14 -2.48 10.05 -39.58 -0.40 -2.88 16 21 C -0.15 -2.72 10.05 -39.59 -0.40 -3.12 16 22 C -0.13 -2.51 10.05 -39.58 -0.40 -2.91 16 23 C -0.11 -2.40 9.67 -39.58 -0.38 -2.78 16 24 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.77 6.43 -51.93 -0.33 0.44 16 27 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.06 0.83 6.21 -51.93 -0.32 0.51 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.08 1.83 6.19 -51.93 -0.32 1.51 16 32 H 0.03 0.58 6.43 -51.93 -0.33 0.25 16 33 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.31 5.98 5.59 -39.29 -0.22 5.76 16 35 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 36 H 0.12 2.43 7.91 -52.49 -0.42 2.01 16 37 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 38 H 0.10 1.54 8.06 -52.49 -0.42 1.12 16 39 H 0.11 1.74 8.06 -52.48 -0.42 1.31 16 40 H 0.12 2.69 7.99 -52.49 -0.42 2.27 16 LS Contribution 318.29 15.07 4.80 4.80 Total: -1.00 -26.94 318.29 -8.83 -35.77 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: -6.44 Total: 8.61 kcal Atomic # 6 Polarization: -24.61 SS G_CDS: -2.30 Total: -26.90 kcal Atomic # 7 Polarization: -38.54 SS G_CDS: 0.13 Total: -38.41 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -26.94 -8.83 -35.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055016229.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.878 kcal (2) G-P(sol) polarization free energy of solvation -26.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds