Wall clock time and date at job start Mon Mar 30 2020 06:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47048 * 2 1 4 4 C 1.52996 * 109.47261 * 120.00439 * 2 1 3 5 5 H 1.09001 * 109.46933 * 300.00143 * 4 2 1 6 6 C 1.52999 * 109.47448 * 59.99806 * 4 2 1 7 7 N 1.46901 * 109.47258 * 180.02562 * 4 2 1 8 8 C 1.46900 * 111.00157 * 154.99671 * 7 4 2 9 9 H 1.09005 * 109.46891 * 325.00081 * 8 7 4 10 10 C 1.50696 * 109.47080 * 85.00135 * 8 7 4 11 11 H 1.08000 * 120.00574 * 34.46807 * 10 8 7 12 12 C 1.37876 * 120.00008 * 214.19783 * 10 8 7 13 13 N 1.31515 * 120.00126 * 354.69204 * 12 10 8 14 14 Si 1.86803 * 120.00156 * 174.68877 * 12 10 8 15 15 H 1.48505 * 109.47014 * 60.00218 * 14 12 10 16 16 H 1.48504 * 109.47301 * 179.97438 * 14 12 10 17 17 H 1.48495 * 109.47327 * 299.99986 * 14 12 10 18 18 C 1.50701 * 109.47223 * 205.00166 * 8 7 4 19 19 C 1.38236 * 119.99502 * 313.80310 * 18 8 7 20 20 C 1.38238 * 119.99531 * 179.78917 * 19 18 8 21 21 C 1.38229 * 120.00392 * 0.44348 * 20 19 18 22 22 C 1.38236 * 119.99788 * 359.81240 * 21 20 19 23 23 C 1.38232 * 120.00245 * 134.08076 * 18 8 7 24 24 H 1.09001 * 109.47264 * 299.99621 * 1 2 3 25 25 H 1.09001 * 109.47613 * 60.00024 * 1 2 3 26 26 H 1.09003 * 109.47314 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.46798 * 240.00411 * 2 1 3 28 28 H 1.09000 * 109.46551 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.47430 * 299.99874 * 3 2 1 30 30 H 1.08994 * 109.47134 * 60.00133 * 3 2 1 31 31 H 1.09000 * 109.47430 * 180.02562 * 6 4 2 32 32 H 1.09003 * 109.47205 * 300.00292 * 6 4 2 33 33 H 1.08999 * 109.47340 * 59.99748 * 6 4 2 34 34 H 1.00898 * 110.99890 * 31.04116 * 7 4 2 35 35 H 0.96998 * 120.00513 * 180.02562 * 13 12 10 36 36 H 1.08002 * 120.00417 * 0.02562 * 19 18 8 37 37 H 1.08002 * 120.00018 * 180.27886 * 20 19 18 38 38 H 1.07996 * 120.00878 * 179.83760 * 21 20 19 39 39 H 1.08004 * 120.00241 * 180.02562 * 22 21 20 40 40 H 1.07995 * 119.99992 * 359.97438 * 23 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.6766 -0.2075 2.1392 6 6 1.5300 -2.1638 1.2491 7 7 3.5090 -0.7208 1.2495 8 6 4.0352 -0.8403 2.6157 9 1 3.3792 -0.3093 3.3055 10 6 4.1001 -2.2951 3.0035 11 1 4.3345 -3.0424 2.2598 12 6 3.8658 -2.6717 4.3090 13 7 3.6890 -1.7557 5.2360 14 14 3.7993 -4.4830 4.7610 15 1 5.0976 -5.1237 4.4304 16 1 3.5363 -4.6208 6.2161 17 1 2.7119 -5.1445 3.9962 18 6 5.4172 -0.2423 2.6759 19 6 6.3460 -0.5488 1.6990 20 6 7.6123 0.0033 1.7519 21 6 7.9526 0.8544 2.7864 22 6 7.0255 1.1567 3.7662 23 6 5.7578 0.6082 3.7111 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 3.1299 1.4424 -0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6766 1.9563 0.8899 31 1 1.8930 -2.6776 2.1393 32 1 0.4400 -2.1638 1.2491 33 1 1.8932 -2.6776 0.3591 34 1 3.8704 0.1036 0.7936 35 1 3.5246 -2.0206 6.1545 36 1 6.0812 -1.2164 0.8925 37 1 8.3365 -0.2326 0.9862 38 1 8.9427 1.2837 2.8292 39 1 7.2913 1.8221 4.5744 40 1 5.0335 0.8443 4.4765 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055016229.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:07 Heat of formation + Delta-G solvation = -5.872343 kcal Electronic energy + Delta-G solvation = -18496.544831 eV Core-core repulsion = 15888.724751 eV Total energy + Delta-G solvation = -2607.820080 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.14055 -38.71481 -35.74336 -33.73971 -31.78199 -31.50756 -30.01844 -28.35283 -27.32561 -24.63797 -23.51327 -22.96381 -21.50088 -20.49399 -18.48212 -17.50144 -16.73658 -16.59162 -15.93988 -15.69211 -15.33193 -14.82609 -14.61977 -14.14378 -13.99666 -13.92036 -13.61855 -13.39930 -13.06485 -12.96189 -12.78947 -12.67711 -12.57260 -12.38587 -12.02851 -11.80334 -11.72440 -11.58327 -11.34138 -11.29955 -11.09653 -10.47849 -9.57097 -9.28929 -9.00351 -8.06708 -6.13861 0.75074 0.78838 1.39421 1.40098 1.47134 2.41974 3.08904 3.28805 3.64510 4.00705 4.09880 4.24091 4.28992 4.32561 4.44713 4.59586 4.65844 4.76935 4.79533 4.87570 4.93775 4.97906 5.01240 5.05027 5.09517 5.22202 5.25736 5.29779 5.42046 5.46253 5.48274 5.55917 5.72543 5.77523 5.80948 5.85846 6.13243 6.22940 6.40767 6.53414 6.98214 7.08795 7.49624 8.95923 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.013239 B = 0.010647 C = 0.006670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.404496 B = 2629.232759 C = 4196.931534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.093 4.093 3 C -0.146 4.146 4 C 0.104 3.896 5 H 0.003 0.997 6 C -0.132 4.132 7 N -0.679 5.679 8 C 0.248 3.752 9 H -0.004 1.004 10 C -0.478 4.478 11 H 0.050 0.950 12 C 0.015 3.985 13 N -0.917 5.917 14 Si 0.943 3.057 15 H -0.275 1.275 16 H -0.288 1.288 17 H -0.270 1.270 18 C -0.062 4.062 19 C -0.122 4.122 20 C -0.128 4.128 21 C -0.143 4.143 22 C -0.132 4.132 23 C -0.134 4.134 24 H 0.045 0.955 25 H 0.072 0.928 26 H 0.059 0.941 27 H 0.078 0.922 28 H 0.048 0.952 29 H 0.077 0.923 30 H 0.042 0.958 31 H 0.041 0.959 32 H 0.058 0.942 33 H 0.052 0.948 34 H 0.324 0.676 35 H 0.258 0.742 36 H 0.116 0.884 37 H 0.142 0.858 38 H 0.145 0.855 39 H 0.131 0.869 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.251 5.537 -8.782 10.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.112 4.112 3 C -0.204 4.204 4 C -0.006 4.006 5 H 0.021 0.979 6 C -0.190 4.190 7 N -0.311 5.311 8 C 0.140 3.860 9 H 0.014 0.986 10 C -0.517 4.517 11 H 0.068 0.932 12 C -0.184 4.184 13 N -0.557 5.557 14 Si 0.769 3.231 15 H -0.201 1.201 16 H -0.213 1.213 17 H -0.195 1.195 18 C -0.063 4.063 19 C -0.140 4.140 20 C -0.146 4.146 21 C -0.160 4.160 22 C -0.150 4.150 23 C -0.153 4.153 24 H 0.064 0.936 25 H 0.091 0.909 26 H 0.078 0.922 27 H 0.096 0.904 28 H 0.067 0.933 29 H 0.096 0.904 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.143 0.857 35 H 0.067 0.933 36 H 0.134 0.866 37 H 0.160 0.840 38 H 0.163 0.837 39 H 0.149 0.851 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.251 4.878 -8.718 9.993 hybrid contribution -0.370 -0.235 1.402 1.468 sum -0.119 4.644 -7.317 8.667 Atomic orbital electron populations 1.21824 0.93928 1.02188 1.01905 1.21263 0.96731 0.95826 0.97361 1.21856 1.00646 0.95881 1.01988 1.21373 0.87878 0.95903 0.95496 0.97870 1.21799 0.98993 0.96420 1.01761 1.60780 1.06770 1.44092 1.19494 1.18126 0.88034 0.94621 0.85232 0.98574 1.21044 1.45358 0.92112 0.93177 0.93164 1.25627 0.95374 1.00665 0.96743 1.70045 1.50092 1.34043 1.01476 0.85842 0.78693 0.81713 0.76810 1.20094 1.21330 1.19496 1.20642 0.98725 0.92950 0.93994 1.21035 0.93684 1.00106 0.99180 1.21385 0.96118 0.97783 0.99296 1.21276 0.99923 0.99865 0.94983 1.21281 0.93229 1.00704 0.99736 1.21054 0.97430 0.98698 0.98153 0.93588 0.90875 0.92180 0.90384 0.93259 0.90442 0.93929 0.93981 0.92357 0.92862 0.85678 0.93268 0.86562 0.84041 0.83685 0.85143 0.89030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.45 8.84 71.98 0.64 -2.82 16 2 C -0.09 -2.70 2.64 -10.80 -0.03 -2.73 16 3 C -0.15 -3.89 8.96 71.98 0.64 -3.24 16 4 C 0.10 3.99 2.23 44.91 0.10 4.09 16 5 H 0.00 0.15 7.43 -2.39 -0.02 0.13 16 6 C -0.13 -5.14 8.82 71.98 0.63 -4.51 16 7 N -0.68 -28.60 5.72 -477.18 -2.73 -31.33 16 8 C 0.25 12.36 2.27 43.42 0.10 12.46 16 9 H 0.00 -0.20 6.49 -2.38 -0.02 -0.22 16 10 C -0.48 -26.03 6.28 25.60 0.16 -25.87 16 11 H 0.05 2.80 7.82 -2.91 -0.02 2.78 16 12 C 0.02 0.84 5.45 84.65 0.46 1.30 16 13 N -0.92 -53.29 12.86 21.45 0.28 -53.01 16 14 Si 0.94 44.54 29.54 68.60 2.03 46.56 16 15 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 16 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 17 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 18 C -0.06 -2.86 4.64 -19.87 -0.09 -2.95 16 19 C -0.12 -4.93 9.08 22.27 0.20 -4.73 16 20 C -0.13 -4.29 10.05 22.27 0.22 -4.06 16 21 C -0.14 -4.56 10.05 22.27 0.22 -4.33 16 22 C -0.13 -4.81 10.05 22.27 0.22 -4.58 16 23 C -0.13 -6.04 9.67 22.27 0.22 -5.83 16 24 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 25 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.06 1.45 6.43 -2.39 -0.02 1.44 16 27 H 0.08 2.20 8.14 -2.38 -0.02 2.18 16 28 H 0.05 1.38 6.21 -2.39 -0.01 1.37 16 29 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.04 1.96 6.19 -2.39 -0.01 1.94 16 32 H 0.06 1.95 6.43 -2.39 -0.02 1.93 16 33 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.32 12.54 5.59 -89.70 -0.50 12.04 16 35 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 36 H 0.12 4.69 7.91 -2.91 -0.02 4.67 16 37 H 0.14 3.72 8.06 -2.91 -0.02 3.70 16 38 H 0.15 3.49 8.06 -2.91 -0.02 3.47 16 39 H 0.13 4.02 8.06 -2.91 -0.02 3.99 16 40 H 0.09 4.49 7.99 -2.91 -0.02 4.47 16 Total: -1.00 -60.95 318.29 3.78 -57.17 By element: Atomic # 1 Polarization: 27.92 SS G_CDS: 0.50 Total: 28.42 kcal Atomic # 6 Polarization: -51.51 SS G_CDS: 3.70 Total: -47.81 kcal Atomic # 7 Polarization: -81.89 SS G_CDS: -2.45 Total: -84.34 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.56 kcal Total: -60.95 3.78 -57.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055016229.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.294 kcal (2) G-P(sol) polarization free energy of solvation -60.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds