Wall clock time and date at job start Mon Mar 30 2020 06:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47120 * 2 1 4 4 C 1.52999 * 109.46997 * 119.99637 * 2 1 3 5 5 H 1.09002 * 109.47592 * 300.00357 * 4 2 1 6 6 C 1.53008 * 109.47266 * 180.02562 * 4 2 1 7 7 N 1.46901 * 109.46993 * 60.00260 * 4 2 1 8 8 C 1.46902 * 110.99838 * 205.00005 * 7 4 2 9 9 H 1.08997 * 109.47114 * 324.99658 * 8 7 4 10 10 C 1.50698 * 109.47133 * 85.00339 * 8 7 4 11 11 H 1.08004 * 119.99717 * 234.66961 * 10 8 7 12 12 C 1.37873 * 120.00214 * 54.66723 * 10 8 7 13 13 N 1.31512 * 120.00170 * 350.82016 * 12 10 8 14 14 Si 1.86800 * 119.99707 * 170.81446 * 12 10 8 15 15 H 1.48497 * 109.47115 * 60.00481 * 14 12 10 16 16 H 1.48504 * 109.46860 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.47497 * 299.99983 * 14 12 10 18 18 C 1.50703 * 109.46877 * 205.00140 * 8 7 4 19 19 C 1.38237 * 120.00159 * 151.24599 * 18 8 7 20 20 C 1.38228 * 120.00331 * 179.97438 * 19 18 8 21 21 C 1.38239 * 119.99641 * 359.97438 * 20 19 18 22 22 C 1.38227 * 120.00229 * 0.06875 * 21 20 19 23 23 C 1.38234 * 120.00169 * 359.88932 * 22 21 20 24 24 H 1.08996 * 109.46735 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.47366 * 300.00429 * 1 2 3 26 26 H 1.09000 * 109.46539 * 60.00511 * 1 2 3 27 27 H 1.09000 * 109.47663 * 239.99900 * 2 1 3 28 28 H 1.09005 * 109.47450 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.47203 * 299.99951 * 3 2 1 30 30 H 1.09000 * 109.46934 * 59.99453 * 3 2 1 31 31 H 1.09004 * 109.46443 * 60.00242 * 6 4 2 32 32 H 1.09000 * 109.46808 * 179.97438 * 6 4 2 33 33 H 1.08996 * 109.46766 * 300.00298 * 6 4 2 34 34 H 1.00901 * 111.00035 * 81.05076 * 7 4 2 35 35 H 0.96999 * 120.00212 * 180.02562 * 13 12 10 36 36 H 1.08007 * 119.99552 * 359.97048 * 19 18 8 37 37 H 1.08003 * 120.00047 * 179.72084 * 20 19 18 38 38 H 1.07998 * 119.99585 * 179.97438 * 21 20 19 39 39 H 1.08004 * 119.99896 * 179.97438 * 22 21 20 40 40 H 1.08001 * 120.00470 * 180.11322 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6766 -0.2074 2.1393 6 6 3.5701 -0.7206 1.2497 7 7 1.5503 -2.1062 1.2493 8 6 1.4875 -2.6423 2.6156 9 1 2.3123 -2.2385 3.2026 10 6 0.1788 -2.2480 3.2502 11 1 0.1727 -1.7270 4.1963 12 6 -1.0108 -2.5523 2.6232 13 7 -1.0054 -3.0213 1.3946 14 14 -2.6303 -2.2985 3.5190 15 1 -2.7741 -0.8667 3.8856 16 1 -3.7535 -2.6985 2.6337 17 1 -2.6507 -3.1292 4.7498 18 6 1.5914 -4.1451 2.5707 19 6 2.1390 -4.8322 3.6379 20 6 2.2339 -6.2106 3.5971 21 6 1.7806 -6.9020 2.4891 22 6 1.2339 -6.2149 1.4216 23 6 1.1382 -4.8365 1.4628 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 1.8934 -0.5138 -0.8899 28 1 3.1301 1.4426 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9563 0.8899 31 1 3.9329 0.3072 1.2499 32 1 3.9333 -1.2340 2.1399 33 1 3.9337 -1.2342 0.3597 34 1 2.1205 -2.6913 0.6572 35 1 -1.8423 -3.2351 0.9533 36 1 2.4928 -4.2920 4.5037 37 1 2.6658 -6.7471 4.4290 38 1 1.8551 -7.9790 2.4570 39 1 0.8802 -6.7551 0.5558 40 1 0.7094 -4.2997 0.6295 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055016230.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:10 Heat of formation + Delta-G solvation = 8.479678 kcal Electronic energy + Delta-G solvation = -18828.427736 eV Core-core repulsion = 16221.230007 eV Total energy + Delta-G solvation = -2607.197730 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.03616 -38.46412 -35.63115 -33.52150 -31.75269 -31.33004 -29.59329 -28.16385 -27.08729 -24.67554 -23.41329 -22.78243 -21.53654 -20.44182 -18.10122 -17.37574 -16.73463 -15.97836 -15.92469 -15.24218 -15.16198 -15.00100 -14.54471 -14.29123 -13.83145 -13.73891 -13.53392 -13.27676 -12.92886 -12.89323 -12.81333 -12.56281 -12.54635 -12.14248 -11.93149 -11.74803 -11.54920 -11.36701 -11.31106 -11.03728 -10.97542 -10.34786 -9.44845 -9.11870 -8.42831 -7.72048 -5.96521 0.84055 0.95332 1.42062 1.45266 1.49048 2.53266 3.28088 3.40871 3.84019 4.10008 4.33467 4.36314 4.38129 4.51010 4.57761 4.63284 4.71798 4.77255 4.79866 4.97432 4.98505 5.04385 5.13733 5.18026 5.23384 5.26739 5.29366 5.38704 5.49283 5.57687 5.65019 5.75193 5.85009 5.89041 6.03033 6.07129 6.27143 6.40545 6.55876 6.71314 7.15225 7.37735 7.69645 9.15113 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.016665 B = 0.010119 C = 0.007388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.788803 B = 2766.534209 C = 3788.859501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.071 4.071 3 C -0.140 4.140 4 C 0.097 3.903 5 H 0.042 0.958 6 C -0.172 4.172 7 N -0.636 5.636 8 C 0.258 3.742 9 H -0.016 1.016 10 C -0.542 4.542 11 H 0.029 0.971 12 C 0.071 3.929 13 N -0.822 5.822 14 Si 0.910 3.090 15 H -0.283 1.283 16 H -0.284 1.284 17 H -0.287 1.287 18 C -0.061 4.061 19 C -0.150 4.150 20 C -0.137 4.137 21 C -0.148 4.148 22 C -0.147 4.147 23 C -0.092 4.092 24 H 0.070 0.930 25 H 0.020 0.980 26 H 0.040 0.960 27 H 0.061 0.939 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.043 0.957 31 H 0.070 0.930 32 H 0.035 0.965 33 H 0.058 0.942 34 H 0.307 0.693 35 H 0.249 0.751 36 H 0.106 0.894 37 H 0.134 0.866 38 H 0.136 0.864 39 H 0.124 0.876 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.614 -0.152 -3.007 7.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.090 4.090 3 C -0.198 4.198 4 C -0.014 4.014 5 H 0.061 0.939 6 C -0.231 4.231 7 N -0.265 5.265 8 C 0.150 3.850 9 H 0.001 0.999 10 C -0.581 4.581 11 H 0.048 0.952 12 C -0.136 4.136 13 N -0.455 5.455 14 Si 0.738 3.262 15 H -0.209 1.209 16 H -0.210 1.210 17 H -0.213 1.213 18 C -0.062 4.062 19 C -0.169 4.169 20 C -0.155 4.155 21 C -0.166 4.166 22 C -0.165 4.165 23 C -0.111 4.111 24 H 0.089 0.911 25 H 0.039 0.961 26 H 0.059 0.941 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.062 0.938 31 H 0.089 0.911 32 H 0.054 0.946 33 H 0.077 0.923 34 H 0.125 0.875 35 H 0.059 0.941 36 H 0.124 0.876 37 H 0.152 0.848 38 H 0.154 0.846 39 H 0.142 0.858 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 5.813 -0.033 -3.187 6.629 hybrid contribution -0.398 0.118 1.122 1.197 sum 5.415 0.086 -2.064 5.795 Atomic orbital electron populations 1.21622 0.95958 1.02989 0.98129 1.20928 0.95542 0.95430 0.97093 1.21861 1.01177 0.95427 1.01341 1.21416 0.91483 0.91371 0.97148 0.93923 1.22512 0.97633 1.02203 1.00738 1.60730 1.54622 1.00459 1.10685 1.17932 0.93034 0.86988 0.87032 0.99850 1.20858 0.91709 1.39949 1.05547 0.95246 1.25079 0.99129 0.94712 0.94704 1.70107 1.25124 1.40323 1.09970 0.86440 0.82788 0.77825 0.79161 1.20906 1.20974 1.21316 1.20554 0.94378 0.97727 0.93522 1.21089 1.02279 0.95100 0.98384 1.21173 1.01679 0.93627 0.99014 1.21211 1.01078 1.00115 0.94167 1.21408 1.01029 0.94709 0.99369 1.21417 0.96395 0.93705 0.99535 0.91058 0.96111 0.94105 0.92096 0.91651 0.92110 0.93790 0.91103 0.94622 0.92338 0.87528 0.94099 0.87601 0.84837 0.84604 0.85821 0.84738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.04 9.04 71.98 0.65 -4.39 16 2 C -0.07 -2.41 2.69 -10.79 -0.03 -2.44 16 3 C -0.14 -3.86 8.84 71.98 0.64 -3.22 16 4 C 0.10 3.69 1.98 44.92 0.09 3.77 16 5 H 0.04 1.88 7.64 -2.39 -0.02 1.87 16 6 C -0.17 -5.43 8.79 71.98 0.63 -4.79 16 7 N -0.64 -27.50 3.30 -477.16 -1.57 -29.08 16 8 C 0.26 12.33 2.28 43.42 0.10 12.43 16 9 H -0.02 -0.79 7.07 -2.39 -0.02 -0.80 16 10 C -0.54 -29.11 8.52 25.60 0.22 -28.89 16 11 H 0.03 1.64 7.83 -2.91 -0.02 1.62 16 12 C 0.07 3.73 5.21 84.65 0.44 4.17 16 13 N -0.82 -42.36 8.54 21.45 0.18 -42.17 16 14 Si 0.91 43.21 29.55 68.60 2.03 45.24 16 15 H -0.28 -13.49 7.11 99.48 0.71 -12.79 16 16 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 17 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 18 C -0.06 -2.75 4.65 -19.86 -0.09 -2.85 16 19 C -0.15 -6.20 9.71 22.27 0.22 -5.98 16 20 C -0.14 -4.83 10.05 22.27 0.22 -4.61 16 21 C -0.15 -5.01 10.05 22.27 0.22 -4.79 16 22 C -0.15 -5.53 10.05 22.27 0.22 -5.30 16 23 C -0.09 -4.02 7.61 22.27 0.17 -3.85 16 24 H 0.07 3.23 6.60 -2.39 -0.02 3.21 16 25 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.06 1.57 6.43 -2.38 -0.02 1.56 16 29 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.07 1.92 6.43 -2.38 -0.02 1.91 16 32 H 0.03 1.19 7.43 -2.39 -0.02 1.17 16 33 H 0.06 1.71 8.13 -2.39 -0.02 1.69 16 34 H 0.31 12.88 7.22 -89.69 -0.65 12.23 16 35 H 0.25 12.70 8.31 -92.71 -0.77 11.93 16 36 H 0.11 4.21 8.06 -2.91 -0.02 4.19 16 37 H 0.13 3.80 8.06 -2.91 -0.02 3.78 16 38 H 0.14 3.63 8.06 -2.91 -0.02 3.61 16 39 H 0.12 4.03 8.06 -2.91 -0.02 4.01 16 40 H 0.13 6.33 5.77 -2.91 -0.02 6.31 16 Total: -1.00 -54.75 313.94 4.69 -50.06 By element: Atomic # 1 Polarization: 26.33 SS G_CDS: 0.35 Total: 26.68 kcal Atomic # 6 Polarization: -54.44 SS G_CDS: 3.70 Total: -50.73 kcal Atomic # 7 Polarization: -69.86 SS G_CDS: -1.39 Total: -71.25 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Total: -54.75 4.69 -50.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055016230.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.542 kcal (2) G-P(sol) polarization free energy of solvation -54.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds