Wall clock time and date at job start Mon Mar 30 2020 06:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.47051 * 2 1 4 4 C 1.52996 * 109.47212 * 120.00369 * 2 1 3 5 5 H 1.08996 * 109.46982 * 299.99785 * 4 2 1 6 6 C 1.52999 * 109.47414 * 59.99854 * 4 2 1 7 7 N 1.46907 * 109.47163 * 180.02562 * 4 2 1 8 8 C 1.46894 * 111.00223 * 154.99786 * 7 4 2 9 9 H 1.09005 * 109.46906 * 34.99883 * 8 7 4 10 10 C 1.50704 * 109.47067 * 275.00041 * 8 7 4 11 11 H 1.07993 * 119.99808 * 327.40419 * 10 8 7 12 12 C 1.37874 * 119.99667 * 147.40729 * 10 8 7 13 13 N 1.31511 * 120.00635 * 0.96365 * 12 10 8 14 14 Si 1.86802 * 119.99752 * 180.96167 * 12 10 8 15 15 H 1.48497 * 109.47270 * 180.02562 * 14 12 10 16 16 H 1.48501 * 109.47398 * 300.00249 * 14 12 10 17 17 H 1.48502 * 109.47057 * 59.99760 * 14 12 10 18 18 C 1.50695 * 109.47269 * 154.99743 * 8 7 4 19 19 C 1.38237 * 119.99775 * 46.43679 * 18 8 7 20 20 C 1.38235 * 120.00016 * 179.80708 * 19 18 8 21 21 C 1.38238 * 119.99813 * 0.40173 * 20 19 18 22 22 C 1.38235 * 120.00176 * 359.84920 * 21 20 19 23 23 C 1.38236 * 120.00018 * 226.71016 * 18 8 7 24 24 H 1.09006 * 109.47522 * 299.99861 * 1 2 3 25 25 H 1.08997 * 109.47689 * 59.99616 * 1 2 3 26 26 H 1.09001 * 109.47067 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47064 * 240.00410 * 2 1 3 28 28 H 1.09002 * 109.47168 * 300.00236 * 3 2 1 29 29 H 1.09005 * 109.46852 * 60.00280 * 3 2 1 30 30 H 1.09000 * 109.47191 * 179.97438 * 3 2 1 31 31 H 1.09005 * 109.46852 * 59.99965 * 6 4 2 32 32 H 1.09002 * 109.47168 * 180.02562 * 6 4 2 33 33 H 1.09000 * 109.47191 * 300.00367 * 6 4 2 34 34 H 1.00896 * 110.99481 * 278.95490 * 7 4 2 35 35 H 0.97000 * 119.99684 * 0.12524 * 13 12 10 36 36 H 1.08003 * 120.00067 * 359.97438 * 19 18 8 37 37 H 1.07994 * 120.00348 * 180.22748 * 20 19 18 38 38 H 1.08002 * 120.00019 * 179.83163 * 21 20 19 39 39 H 1.07994 * 120.00119 * 179.97438 * 22 21 20 40 40 H 1.07990 * 120.00077 * 359.97438 * 23 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 1 1.6766 -0.2075 2.1391 6 6 1.5300 -2.1638 1.2492 7 7 3.5090 -0.7208 1.2495 8 6 4.0352 -0.8403 2.6157 9 1 3.3796 -1.4838 3.2025 10 6 4.0990 0.5249 3.2507 11 1 4.3029 1.3941 2.6430 12 6 3.8972 0.6642 4.6075 13 7 3.6678 -0.3964 5.3505 14 14 3.9496 2.3594 5.3903 15 1 3.7048 2.2384 6.8500 16 1 5.2842 2.9693 5.1616 17 1 2.9022 3.2183 4.7817 18 6 5.4176 -1.4387 2.5710 19 6 6.3477 -0.9629 1.6657 20 6 7.6170 -1.5090 1.6274 21 6 7.9536 -2.5366 2.4887 22 6 7.0219 -3.0159 3.3904 23 6 5.7537 -2.4671 3.4313 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.6765 1.9564 -0.8900 29 1 1.6766 1.9563 0.8901 30 1 3.1299 1.4425 0.0005 31 1 1.8933 -2.6776 0.3591 32 1 1.8930 -2.6775 2.1394 33 1 0.4400 -2.1638 1.2491 34 1 3.8709 -1.4530 0.6571 35 1 3.6425 -1.2769 4.9443 36 1 6.0835 -0.1626 0.9903 37 1 8.3448 -1.1349 0.9227 38 1 8.9445 -2.9651 2.4569 39 1 7.2847 -3.8189 4.0629 40 1 5.0259 -2.8415 4.1358 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055016232.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:13 Heat of formation + Delta-G solvation = 3.142718 kcal Electronic energy + Delta-G solvation = -18530.789197 eV Core-core repulsion = 15923.360039 eV Total energy + Delta-G solvation = -2607.429158 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.69905 -37.25432 -34.32703 -32.05158 -30.37669 -30.10419 -28.41232 -26.50189 -25.30786 -23.22547 -22.12855 -21.55622 -20.19055 -19.23428 -16.76627 -16.06884 -15.06968 -14.77131 -14.18152 -13.95757 -13.74724 -13.72295 -13.34179 -12.83107 -12.57891 -12.43385 -12.22678 -11.79905 -11.72818 -11.62177 -11.46918 -10.85105 -10.82298 -10.65586 -10.42709 -10.33374 -10.18907 -10.15188 -9.93888 -9.74672 -9.03347 -8.47345 -8.15051 -7.75243 -7.27852 -6.35320 -4.07420 2.17774 2.21719 3.43571 3.45034 3.63093 4.48962 4.60500 5.06560 5.28070 5.33692 5.46127 5.58247 5.64070 5.72205 5.76598 5.83621 5.91067 5.93024 6.09290 6.10607 6.28792 6.29734 6.33707 6.37414 6.39681 6.51529 6.59829 6.64020 6.76226 6.83296 6.96210 7.00402 7.06201 7.21452 7.27087 7.58305 7.79413 8.00266 8.06379 8.47238 8.63415 8.87793 9.61507 10.98079 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.014231 B = 0.009801 C = 0.006999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.018984 B = 2856.273753 C = 3999.876003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.080 4.080 3 C -0.131 4.131 4 C 0.096 3.904 5 H 0.083 0.917 6 C -0.181 4.181 7 N -0.670 5.670 8 C 0.230 3.770 9 H 0.019 0.981 10 C -0.559 4.559 11 H 0.059 0.941 12 C 0.019 3.981 13 N -0.908 5.908 14 Si 1.066 2.934 15 H -0.284 1.284 16 H -0.288 1.288 17 H -0.287 1.287 18 C -0.042 4.042 19 C -0.105 4.105 20 C -0.131 4.131 21 C -0.151 4.151 22 C -0.126 4.126 23 C -0.125 4.125 24 H 0.053 0.947 25 H 0.047 0.953 26 H 0.050 0.950 27 H 0.057 0.943 28 H 0.032 0.968 29 H 0.050 0.950 30 H 0.070 0.930 31 H 0.046 0.954 32 H 0.050 0.950 33 H 0.054 0.946 34 H 0.313 0.687 35 H 0.268 0.732 36 H 0.121 0.879 37 H 0.108 0.892 38 H 0.106 0.894 39 H 0.107 0.893 40 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.520 -2.470 -8.247 8.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.099 4.099 3 C -0.189 4.189 4 C -0.015 4.015 5 H 0.101 0.899 6 C -0.240 4.240 7 N -0.299 5.299 8 C 0.123 3.877 9 H 0.036 0.964 10 C -0.598 4.598 11 H 0.077 0.923 12 C -0.186 4.186 13 N -0.544 5.544 14 Si 0.895 3.105 15 H -0.209 1.209 16 H -0.214 1.214 17 H -0.214 1.214 18 C -0.043 4.043 19 C -0.123 4.123 20 C -0.149 4.149 21 C -0.169 4.169 22 C -0.144 4.144 23 C -0.143 4.143 24 H 0.072 0.928 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.051 0.949 29 H 0.069 0.931 30 H 0.089 0.911 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.129 0.871 35 H 0.080 0.920 36 H 0.139 0.861 37 H 0.126 0.874 38 H 0.124 0.876 39 H 0.126 0.874 40 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -0.627 -0.967 -6.786 6.883 hybrid contribution 0.114 -1.796 -1.083 2.100 sum -0.513 -2.762 -7.869 8.355 Atomic orbital electron populations 1.21908 0.96368 1.01065 1.01211 1.21020 0.93952 0.97120 0.97811 1.21635 1.02716 0.94839 0.99662 1.21442 0.88856 0.93039 0.98133 0.89864 1.22574 1.01212 0.99208 1.00983 1.60798 1.05432 1.51117 1.12545 1.18448 0.87046 0.96453 0.85802 0.96351 1.21801 1.51421 0.91945 0.94602 0.92307 1.25834 0.93565 1.04825 0.94348 1.70839 1.45517 0.99485 1.38602 0.83572 0.76612 0.74251 0.76114 1.20929 1.21414 1.21372 1.20782 0.99389 0.91379 0.92789 1.20948 0.92567 0.99509 0.99326 1.21031 0.96689 0.97589 0.99600 1.20838 0.98747 0.99107 0.98257 1.20956 0.94100 1.00332 0.98987 1.21035 0.96489 0.97212 0.99606 0.92794 0.93391 0.93051 0.92433 0.94853 0.93133 0.91066 0.93443 0.93117 0.92681 0.87098 0.92033 0.86128 0.87407 0.87569 0.87448 0.87128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 8.84 37.15 0.33 -1.69 16 2 C -0.08 -1.26 2.69 -90.63 -0.24 -1.50 16 3 C -0.13 -2.16 9.04 37.16 0.34 -1.83 16 4 C 0.10 1.76 1.98 -67.71 -0.13 1.63 16 5 H 0.08 1.82 7.63 -51.93 -0.40 1.42 16 6 C -0.18 -2.96 8.79 37.16 0.33 -2.63 16 7 N -0.67 -13.42 4.84 -102.18 -0.49 -13.91 16 8 C 0.23 5.38 1.88 -70.02 -0.13 5.25 16 9 H 0.02 0.48 5.18 -51.93 -0.27 0.21 16 10 C -0.56 -14.84 8.20 -34.44 -0.28 -15.12 16 11 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 12 C 0.02 0.53 5.46 -17.82 -0.10 0.43 16 13 N -0.91 -26.26 13.63 55.43 0.76 -25.50 16 14 Si 1.07 24.98 29.90 -169.99 -5.08 19.89 16 15 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 16 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 17 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 18 C -0.04 -0.94 4.64 -104.63 -0.49 -1.42 16 19 C -0.11 -2.15 9.09 -39.58 -0.36 -2.51 16 20 C -0.13 -2.36 10.05 -39.58 -0.40 -2.76 16 21 C -0.15 -2.65 10.05 -39.58 -0.40 -3.04 16 22 C -0.13 -2.35 10.05 -39.58 -0.40 -2.75 16 23 C -0.12 -2.67 9.56 -39.58 -0.38 -3.05 16 24 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.05 0.65 6.43 -51.93 -0.33 0.32 16 27 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.07 1.29 7.60 -51.93 -0.39 0.90 16 31 H 0.05 0.71 8.13 -51.93 -0.42 0.29 16 32 H 0.05 0.91 7.43 -51.93 -0.39 0.52 16 33 H 0.05 0.81 6.43 -51.93 -0.33 0.48 16 34 H 0.31 5.90 7.90 -39.29 -0.31 5.59 16 35 H 0.27 7.64 5.84 -40.82 -0.24 7.40 16 36 H 0.12 2.44 7.92 -52.48 -0.42 2.03 16 37 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 38 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 39 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 40 H 0.11 2.42 7.41 -52.49 -0.39 2.04 16 LS Contribution 320.59 15.07 4.83 4.83 Total: -1.00 -27.91 320.59 -8.78 -36.69 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -6.48 Total: 9.00 kcal Atomic # 6 Polarization: -28.68 SS G_CDS: -2.31 Total: -31.00 kcal Atomic # 7 Polarization: -39.68 SS G_CDS: 0.26 Total: -39.42 kcal Atomic # 14 Polarization: 24.98 SS G_CDS: -5.08 Total: 19.89 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -27.91 -8.78 -36.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055016232.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.836 kcal (2) G-P(sol) polarization free energy of solvation -27.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds