Wall clock time and date at job start Mon Mar 30 2020 06:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.47051 * 2 1 4 4 C 1.52996 * 109.47212 * 120.00369 * 2 1 3 5 5 H 1.08996 * 109.46982 * 299.99785 * 4 2 1 6 6 C 1.52999 * 109.47414 * 59.99854 * 4 2 1 7 7 N 1.46907 * 109.47163 * 180.02562 * 4 2 1 8 8 C 1.46894 * 111.00223 * 154.99786 * 7 4 2 9 9 H 1.09005 * 109.46906 * 34.99883 * 8 7 4 10 10 C 1.50704 * 109.47067 * 275.00041 * 8 7 4 11 11 H 1.07993 * 119.99808 * 327.40419 * 10 8 7 12 12 C 1.37874 * 119.99667 * 147.40729 * 10 8 7 13 13 N 1.31511 * 120.00635 * 0.96365 * 12 10 8 14 14 Si 1.86802 * 119.99752 * 180.96167 * 12 10 8 15 15 H 1.48497 * 109.47270 * 180.02562 * 14 12 10 16 16 H 1.48501 * 109.47398 * 300.00249 * 14 12 10 17 17 H 1.48502 * 109.47057 * 59.99760 * 14 12 10 18 18 C 1.50695 * 109.47269 * 154.99743 * 8 7 4 19 19 C 1.38237 * 119.99775 * 46.43679 * 18 8 7 20 20 C 1.38235 * 120.00016 * 179.80708 * 19 18 8 21 21 C 1.38238 * 119.99813 * 0.40173 * 20 19 18 22 22 C 1.38235 * 120.00176 * 359.84920 * 21 20 19 23 23 C 1.38236 * 120.00018 * 226.71016 * 18 8 7 24 24 H 1.09006 * 109.47522 * 299.99861 * 1 2 3 25 25 H 1.08997 * 109.47689 * 59.99616 * 1 2 3 26 26 H 1.09001 * 109.47067 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47064 * 240.00410 * 2 1 3 28 28 H 1.09002 * 109.47168 * 300.00236 * 3 2 1 29 29 H 1.09005 * 109.46852 * 60.00280 * 3 2 1 30 30 H 1.09000 * 109.47191 * 179.97438 * 3 2 1 31 31 H 1.09005 * 109.46852 * 59.99965 * 6 4 2 32 32 H 1.09002 * 109.47168 * 180.02562 * 6 4 2 33 33 H 1.09000 * 109.47191 * 300.00367 * 6 4 2 34 34 H 1.00896 * 110.99481 * 278.95490 * 7 4 2 35 35 H 0.97000 * 119.99684 * 0.12524 * 13 12 10 36 36 H 1.08003 * 120.00067 * 359.97438 * 19 18 8 37 37 H 1.07994 * 120.00348 * 180.22748 * 20 19 18 38 38 H 1.08002 * 120.00019 * 179.83163 * 21 20 19 39 39 H 1.07994 * 120.00119 * 179.97438 * 22 21 20 40 40 H 1.07990 * 120.00077 * 359.97438 * 23 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 1 1.6766 -0.2075 2.1391 6 6 1.5300 -2.1638 1.2492 7 7 3.5090 -0.7208 1.2495 8 6 4.0352 -0.8403 2.6157 9 1 3.3796 -1.4838 3.2025 10 6 4.0990 0.5249 3.2507 11 1 4.3029 1.3941 2.6430 12 6 3.8972 0.6642 4.6075 13 7 3.6678 -0.3964 5.3505 14 14 3.9496 2.3594 5.3903 15 1 3.7048 2.2384 6.8500 16 1 5.2842 2.9693 5.1616 17 1 2.9022 3.2183 4.7817 18 6 5.4176 -1.4387 2.5710 19 6 6.3477 -0.9629 1.6657 20 6 7.6170 -1.5090 1.6274 21 6 7.9536 -2.5366 2.4887 22 6 7.0219 -3.0159 3.3904 23 6 5.7537 -2.4671 3.4313 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.6765 1.9564 -0.8900 29 1 1.6766 1.9563 0.8901 30 1 3.1299 1.4425 0.0005 31 1 1.8933 -2.6776 0.3591 32 1 1.8930 -2.6775 2.1394 33 1 0.4400 -2.1638 1.2491 34 1 3.8709 -1.4530 0.6571 35 1 3.6425 -1.2769 4.9443 36 1 6.0835 -0.1626 0.9903 37 1 8.3448 -1.1349 0.9227 38 1 8.9445 -2.9651 2.4569 39 1 7.2847 -3.8189 4.0629 40 1 5.0259 -2.8415 4.1358 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055016232.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:12 Heat of formation + Delta-G solvation = -11.443997 kcal Electronic energy + Delta-G solvation = -18531.421724 eV Core-core repulsion = 15923.360039 eV Total energy + Delta-G solvation = -2608.061685 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.29349 -38.72429 -36.02715 -33.86930 -31.90717 -31.63773 -29.89689 -27.91551 -27.07757 -24.96474 -23.63511 -23.07279 -21.90980 -20.64467 -18.72888 -17.60796 -16.70205 -16.29173 -15.73408 -15.62093 -15.36161 -15.21927 -14.83116 -14.44813 -14.08159 -13.94086 -13.86446 -13.32577 -13.15075 -13.06372 -12.79930 -12.66336 -12.49706 -12.17738 -12.00314 -11.89395 -11.74064 -11.62753 -11.54329 -11.20732 -10.93365 -10.53025 -9.68801 -9.37370 -9.04450 -8.47088 -6.23543 0.62804 0.67835 1.50234 1.57489 1.75780 2.55549 3.01887 3.27165 3.53839 3.91313 4.13520 4.16513 4.23154 4.32910 4.37494 4.43732 4.46057 4.58316 4.65137 4.75986 4.83046 4.87695 4.95848 4.98196 5.05252 5.08641 5.16115 5.21672 5.27724 5.33315 5.42415 5.56826 5.67362 5.70081 5.73258 5.96577 6.03316 6.12827 6.30066 6.56844 6.64394 6.97916 7.52810 8.82141 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.014231 B = 0.009801 C = 0.006999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.018984 B = 2856.273753 C = 3999.876003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.074 4.074 3 C -0.127 4.127 4 C 0.095 3.905 5 H 0.039 0.961 6 C -0.172 4.172 7 N -0.666 5.666 8 C 0.240 3.760 9 H -0.016 1.016 10 C -0.560 4.560 11 H 0.044 0.956 12 C -0.029 4.029 13 N -0.937 5.937 14 Si 1.105 2.895 15 H -0.287 1.287 16 H -0.276 1.276 17 H -0.273 1.273 18 C -0.068 4.068 19 C -0.117 4.117 20 C -0.124 4.124 21 C -0.140 4.140 22 C -0.126 4.126 23 C -0.149 4.149 24 H 0.041 0.959 25 H 0.070 0.930 26 H 0.063 0.937 27 H 0.073 0.927 28 H 0.061 0.939 29 H 0.028 0.972 30 H 0.049 0.951 31 H 0.067 0.933 32 H 0.024 0.976 33 H 0.074 0.926 34 H 0.321 0.679 35 H 0.258 0.742 36 H 0.116 0.884 37 H 0.144 0.856 38 H 0.149 0.851 39 H 0.134 0.866 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.730 -2.637 -10.200 10.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.093 4.093 3 C -0.184 4.184 4 C -0.015 4.015 5 H 0.057 0.943 6 C -0.230 4.230 7 N -0.295 5.295 8 C 0.131 3.869 9 H 0.002 0.998 10 C -0.599 4.599 11 H 0.063 0.937 12 C -0.228 4.228 13 N -0.576 5.576 14 Si 0.928 3.072 15 H -0.213 1.213 16 H -0.201 1.201 17 H -0.199 1.199 18 C -0.069 4.069 19 C -0.136 4.136 20 C -0.142 4.142 21 C -0.158 4.158 22 C -0.144 4.144 23 C -0.167 4.167 24 H 0.060 0.940 25 H 0.089 0.911 26 H 0.082 0.918 27 H 0.092 0.908 28 H 0.080 0.920 29 H 0.047 0.953 30 H 0.068 0.932 31 H 0.086 0.914 32 H 0.043 0.957 33 H 0.093 0.907 34 H 0.138 0.862 35 H 0.069 0.931 36 H 0.134 0.866 37 H 0.162 0.838 38 H 0.166 0.834 39 H 0.152 0.848 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.619 -1.138 -8.770 8.865 hybrid contribution -0.220 -1.808 -0.563 1.906 sum 0.399 -2.945 -9.333 9.795 Atomic orbital electron populations 1.21868 0.94350 1.02085 1.01769 1.20991 0.95573 0.96192 0.96545 1.21580 1.01287 0.95604 0.99950 1.21456 0.87844 0.94320 0.97875 0.94305 1.22464 1.02383 0.97504 1.00685 1.60709 1.06610 1.51337 1.10837 1.18149 0.87758 0.94325 0.86619 0.99812 1.21983 1.50397 0.93001 0.94540 0.93749 1.26994 0.93331 1.07044 0.95428 1.70922 1.48210 0.99549 1.38869 0.83072 0.77530 0.71333 0.75223 1.21253 1.20117 1.19871 1.20666 0.98825 0.92876 0.94546 1.20996 0.93602 0.99836 0.99130 1.21431 0.96019 0.96929 0.99817 1.21321 1.00031 0.98004 0.96454 1.21282 0.92970 1.00591 0.99593 1.21051 0.97789 0.98187 0.99720 0.93977 0.91094 0.91833 0.90814 0.92028 0.95286 0.93186 0.91355 0.95673 0.90750 0.86169 0.93132 0.86572 0.83793 0.83360 0.84839 0.89273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.64 8.84 71.98 0.64 -3.00 16 2 C -0.07 -2.25 2.69 -10.80 -0.03 -2.28 16 3 C -0.13 -4.13 9.04 71.98 0.65 -3.48 16 4 C 0.10 3.61 1.98 44.91 0.09 3.70 16 5 H 0.04 1.81 7.63 -2.39 -0.02 1.79 16 6 C -0.17 -5.65 8.79 71.98 0.63 -5.02 16 7 N -0.67 -27.56 4.84 -477.18 -2.31 -29.87 16 8 C 0.24 11.83 1.88 43.42 0.08 11.91 16 9 H -0.02 -0.87 5.18 -2.38 -0.01 -0.89 16 10 C -0.56 -31.11 8.20 25.60 0.21 -30.90 16 11 H 0.04 2.53 7.81 -2.91 -0.02 2.51 16 12 C -0.03 -1.67 5.46 84.65 0.46 -1.21 16 13 N -0.94 -56.92 13.63 21.45 0.29 -56.63 16 14 Si 1.10 51.61 29.90 68.60 2.05 53.66 16 15 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 16 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 17 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 18 C -0.07 -3.10 4.64 -19.87 -0.09 -3.19 16 19 C -0.12 -4.72 9.09 22.27 0.20 -4.52 16 20 C -0.12 -4.10 10.05 22.27 0.22 -3.87 16 21 C -0.14 -4.38 10.05 22.27 0.22 -4.16 16 22 C -0.13 -4.52 10.05 22.27 0.22 -4.30 16 23 C -0.15 -6.53 9.56 22.27 0.21 -6.32 16 24 H 0.04 1.16 8.14 -2.38 -0.02 1.14 16 25 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.06 1.46 6.43 -2.39 -0.02 1.44 16 27 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 28 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.03 1.03 8.14 -2.38 -0.02 1.02 16 30 H 0.05 1.82 7.60 -2.39 -0.02 1.80 16 31 H 0.07 1.95 8.13 -2.38 -0.02 1.93 16 32 H 0.02 0.93 7.43 -2.39 -0.02 0.91 16 33 H 0.07 2.14 6.43 -2.39 -0.02 2.12 16 34 H 0.32 12.29 7.90 -89.70 -0.71 11.59 16 35 H 0.26 15.75 5.84 -92.71 -0.54 15.21 16 36 H 0.12 4.69 7.92 -2.91 -0.02 4.67 16 37 H 0.14 3.71 8.06 -2.91 -0.02 3.68 16 38 H 0.15 3.45 8.06 -2.91 -0.02 3.42 16 39 H 0.13 3.99 8.06 -2.91 -0.02 3.97 16 40 H 0.09 4.20 7.41 -2.92 -0.02 4.17 16 Total: -1.00 -63.68 320.59 4.28 -59.40 By element: Atomic # 1 Polarization: 29.57 SS G_CDS: 0.52 Total: 30.09 kcal Atomic # 6 Polarization: -60.37 SS G_CDS: 3.73 Total: -56.64 kcal Atomic # 7 Polarization: -84.49 SS G_CDS: -2.02 Total: -86.50 kcal Atomic # 14 Polarization: 51.61 SS G_CDS: 2.05 Total: 53.66 kcal Total: -63.68 4.28 -59.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055016232.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.955 kcal (2) G-P(sol) polarization free energy of solvation -63.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds