Wall clock time and date at job start Mon Mar 30 2020 06:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47358 * 2 1 4 4 C 1.53003 * 109.47044 * 120.00151 * 2 1 3 5 5 H 1.08998 * 109.47177 * 60.00135 * 4 2 1 6 6 C 1.53005 * 109.47004 * 299.99728 * 4 2 1 7 7 N 1.46903 * 109.47139 * 179.97438 * 4 2 1 8 8 C 1.46899 * 110.99886 * 204.99694 * 7 4 2 9 9 H 1.09007 * 109.47088 * 35.00281 * 8 7 4 10 10 C 1.50695 * 109.47243 * 274.99986 * 8 7 4 11 11 H 1.08007 * 119.99688 * 125.29842 * 10 8 7 12 12 C 1.37877 * 120.00104 * 305.29367 * 10 8 7 13 13 N 1.31511 * 120.00049 * 9.46419 * 12 10 8 14 14 Si 1.86802 * 120.00011 * 189.46167 * 12 10 8 15 15 H 1.48510 * 109.47172 * 0.02562 * 14 12 10 16 16 H 1.48499 * 109.47320 * 120.00083 * 14 12 10 17 17 H 1.48501 * 109.47135 * 240.00286 * 14 12 10 18 18 C 1.50699 * 109.46881 * 155.00078 * 8 7 4 19 19 C 1.38238 * 120.00332 * 32.36627 * 18 8 7 20 20 C 1.38227 * 120.00067 * 179.78803 * 19 18 8 21 21 C 1.38242 * 120.00466 * 0.44239 * 20 19 18 22 22 C 1.38235 * 119.99194 * 359.81361 * 21 20 19 23 23 C 1.38235 * 120.00464 * 359.97438 * 22 21 20 24 24 H 1.09000 * 109.46804 * 300.00280 * 1 2 3 25 25 H 1.08998 * 109.46778 * 59.99502 * 1 2 3 26 26 H 1.08991 * 109.47038 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47443 * 240.00094 * 2 1 3 28 28 H 1.09007 * 109.47558 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.47582 * 300.00006 * 3 2 1 30 30 H 1.09000 * 109.47126 * 60.00560 * 3 2 1 31 31 H 1.08996 * 109.47042 * 59.99932 * 6 4 2 32 32 H 1.09001 * 109.47252 * 179.97438 * 6 4 2 33 33 H 1.09003 * 109.47080 * 300.00001 * 6 4 2 34 34 H 1.00900 * 111.00107 * 328.95545 * 7 4 2 35 35 H 0.97001 * 119.99851 * 180.02562 * 13 12 10 36 36 H 1.08002 * 119.99622 * 0.02562 * 19 18 8 37 37 H 1.08010 * 119.99968 * 180.28162 * 20 19 18 38 38 H 1.07995 * 120.00240 * 179.83813 * 21 20 19 39 39 H 1.07999 * 119.99704 * 179.97438 * 22 21 20 40 40 H 1.07995 * 119.99970 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6767 -1.7490 1.2492 6 6 1.5300 0.0000 2.4985 7 7 3.5090 -0.7218 1.2490 8 6 4.0352 -1.8453 2.0357 9 1 3.3791 -2.7082 1.9207 10 6 4.1000 -1.4538 3.4894 11 1 3.6103 -2.0627 4.2350 12 6 4.7846 -0.3183 3.8677 13 7 5.2209 0.5213 2.9545 14 14 5.0922 0.0274 5.6775 15 1 4.5047 -1.0632 6.4967 16 1 6.5545 0.0997 5.9261 17 1 4.4625 1.3201 6.0486 18 6 5.4171 -2.1964 1.5479 19 6 6.2478 -1.2079 1.0541 20 6 7.5169 -1.5294 0.6107 21 6 7.9524 -2.8408 0.6526 22 6 7.1198 -3.8300 1.1415 23 6 5.8521 -3.5079 1.5890 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 3.1301 1.4425 0.0005 29 1 1.6768 1.9564 -0.8899 30 1 1.6768 1.9563 0.8900 31 1 0.4401 0.0001 2.4985 32 1 1.8929 -0.5141 3.3885 33 1 1.8934 1.0277 2.4985 34 1 3.8704 -0.7393 0.3071 35 1 5.7029 1.3200 3.2206 36 1 5.9064 -0.1839 1.0182 37 1 8.1676 -0.7563 0.2291 38 1 8.9430 -3.0922 0.3038 39 1 7.4597 -4.8546 1.1739 40 1 5.2019 -4.2808 1.9713 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055016234.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:15 Heat of formation + Delta-G solvation = 11.378311 kcal Electronic energy + Delta-G solvation = -18811.526653 eV Core-core repulsion = 16204.454618 eV Total energy + Delta-G solvation = -2607.072035 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.05526 -38.61386 -35.75186 -33.34301 -31.62660 -31.28408 -29.23157 -28.29100 -27.69540 -24.71215 -23.64527 -22.84443 -21.50096 -19.75151 -18.15870 -17.42342 -16.72103 -16.31195 -15.84738 -15.70597 -15.41254 -14.88344 -14.41324 -13.98317 -13.81980 -13.76265 -13.55782 -13.31912 -12.95018 -12.85952 -12.68911 -12.60078 -12.50029 -12.02002 -11.91077 -11.77332 -11.71277 -11.40046 -11.15839 -11.07120 -11.00725 -10.31608 -9.45337 -9.12793 -8.49605 -7.73744 -5.94499 0.82771 0.94798 1.39583 1.45517 1.51069 2.52405 3.27248 3.40395 3.81607 4.10142 4.16033 4.34391 4.37426 4.46664 4.53301 4.71430 4.72761 4.83375 4.88255 4.95836 4.98907 5.06288 5.11903 5.21202 5.22747 5.26246 5.29934 5.47427 5.48591 5.56480 5.63386 5.71221 5.84651 5.87384 5.94059 6.05472 6.27659 6.39451 6.55977 6.70634 7.13922 7.35156 7.68906 9.14836 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.016099 B = 0.010009 C = 0.007302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.788496 B = 2796.803129 C = 3833.846136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.091 4.091 3 C -0.127 4.127 4 C 0.102 3.898 5 H 0.006 0.994 6 C -0.120 4.120 7 N -0.635 5.635 8 C 0.253 3.747 9 H -0.019 1.019 10 C -0.527 4.527 11 H 0.031 0.969 12 C 0.067 3.933 13 N -0.829 5.829 14 Si 0.911 3.089 15 H -0.281 1.281 16 H -0.289 1.289 17 H -0.284 1.284 18 C -0.064 4.064 19 C -0.094 4.094 20 C -0.149 4.149 21 C -0.147 4.147 22 C -0.137 4.137 23 C -0.150 4.150 24 H 0.056 0.944 25 H 0.067 0.933 26 H 0.051 0.949 27 H 0.060 0.940 28 H 0.046 0.954 29 H 0.057 0.943 30 H 0.044 0.956 31 H 0.050 0.950 32 H 0.040 0.960 33 H 0.041 0.959 34 H 0.307 0.693 35 H 0.248 0.752 36 H 0.140 0.860 37 H 0.123 0.877 38 H 0.136 0.864 39 H 0.135 0.865 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.263 -1.602 -7.011 7.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.110 4.110 3 C -0.184 4.184 4 C -0.008 4.008 5 H 0.024 0.976 6 C -0.177 4.177 7 N -0.266 5.266 8 C 0.145 3.855 9 H -0.001 1.001 10 C -0.565 4.565 11 H 0.050 0.950 12 C -0.140 4.140 13 N -0.463 5.463 14 Si 0.740 3.260 15 H -0.206 1.206 16 H -0.215 1.215 17 H -0.211 1.211 18 C -0.065 4.065 19 C -0.113 4.113 20 C -0.167 4.167 21 C -0.165 4.165 22 C -0.155 4.155 23 C -0.169 4.169 24 H 0.075 0.925 25 H 0.086 0.914 26 H 0.070 0.930 27 H 0.079 0.921 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.124 0.876 35 H 0.058 0.942 36 H 0.157 0.843 37 H 0.141 0.859 38 H 0.154 0.846 39 H 0.153 0.847 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -2.127 -0.962 -6.519 6.924 hybrid contribution 0.124 -0.551 0.973 1.125 sum -2.002 -1.512 -5.546 6.087 Atomic orbital electron populations 1.21812 0.94027 1.01624 1.02186 1.21235 0.96538 0.96898 0.96334 1.21631 1.01006 0.95209 1.00561 1.21384 0.89030 0.95295 0.95115 0.97584 1.21707 0.97716 1.00148 0.98157 1.60725 1.04583 1.46875 1.14381 1.18088 0.87498 0.86980 0.92914 1.00094 1.20816 1.34920 1.09398 0.91364 0.95029 1.25106 0.95420 0.95663 0.97794 1.70117 1.34743 1.09720 1.31683 0.86277 0.77318 0.77586 0.84846 1.20582 1.21506 1.21071 1.20561 0.99050 0.92801 0.94127 1.21596 0.93375 1.00699 0.95586 1.21429 0.96659 0.96942 1.01704 1.21224 1.00196 0.92985 1.02083 1.21174 0.93820 0.99890 1.00608 1.21113 0.97383 0.96099 1.02281 0.92509 0.91436 0.92951 0.92115 0.93450 0.92383 0.93663 0.93073 0.94079 0.93978 0.87555 0.94186 0.84265 0.85939 0.84576 0.84719 0.87444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.54 8.84 71.98 0.64 -2.91 16 2 C -0.09 -2.84 2.60 -10.79 -0.03 -2.87 16 3 C -0.13 -4.00 8.68 71.98 0.62 -3.37 16 4 C 0.10 3.96 2.44 44.92 0.11 4.07 16 5 H 0.01 0.26 7.43 -2.39 -0.02 0.24 16 6 C -0.12 -4.83 8.47 71.98 0.61 -4.22 16 7 N -0.64 -27.92 3.49 -477.16 -1.66 -29.58 16 8 C 0.25 12.24 2.49 43.42 0.11 12.34 16 9 H -0.02 -0.92 7.35 -2.38 -0.02 -0.94 16 10 C -0.53 -28.06 6.61 25.60 0.17 -27.89 16 11 H 0.03 1.76 7.83 -2.91 -0.02 1.73 16 12 C 0.07 3.50 5.20 84.66 0.44 3.94 16 13 N -0.83 -43.37 9.24 21.45 0.20 -43.17 16 14 Si 0.91 43.22 29.55 68.60 2.03 45.24 16 15 H -0.28 -13.41 7.11 99.48 0.71 -12.71 16 16 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 17 H -0.28 -13.34 7.11 99.48 0.71 -12.64 16 18 C -0.06 -2.94 4.65 -19.87 -0.09 -3.04 16 19 C -0.09 -4.18 7.65 22.27 0.17 -4.01 16 20 C -0.15 -5.70 10.05 22.27 0.22 -5.48 16 21 C -0.15 -5.02 10.05 22.27 0.22 -4.79 16 22 C -0.14 -4.83 10.05 22.27 0.22 -4.60 16 23 C -0.15 -6.20 9.69 22.27 0.22 -5.99 16 24 H 0.06 1.47 6.43 -2.39 -0.02 1.45 16 25 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.06 1.83 8.12 -2.39 -0.02 1.81 16 28 H 0.05 1.71 7.48 -2.38 -0.02 1.69 16 29 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.04 1.50 6.43 -2.39 -0.02 1.48 16 31 H 0.05 1.74 6.43 -2.39 -0.02 1.73 16 32 H 0.04 1.90 6.19 -2.39 -0.01 1.89 16 33 H 0.04 1.79 6.43 -2.39 -0.02 1.77 16 34 H 0.31 13.09 7.12 -89.69 -0.64 12.45 16 35 H 0.25 12.77 8.31 -92.71 -0.77 12.00 16 36 H 0.14 6.72 5.59 -2.91 -0.02 6.71 16 37 H 0.12 4.09 8.06 -2.91 -0.02 4.07 16 38 H 0.14 3.66 8.06 -2.91 -0.02 3.64 16 39 H 0.13 3.81 8.06 -2.91 -0.02 3.79 16 40 H 0.11 4.23 8.06 -2.91 -0.02 4.21 16 Total: -1.00 -55.34 308.86 4.57 -50.78 By element: Atomic # 1 Polarization: 25.17 SS G_CDS: 0.37 Total: 25.54 kcal Atomic # 6 Polarization: -52.44 SS G_CDS: 3.63 Total: -48.81 kcal Atomic # 7 Polarization: -71.29 SS G_CDS: -1.47 Total: -72.75 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.24 kcal Total: -55.34 4.57 -50.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055016234.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.156 kcal (2) G-P(sol) polarization free energy of solvation -55.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds