Wall clock time and date at job start Mon Mar 30 2020 05:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47064 * 2 1 4 4 C 1.53003 * 109.47113 * 239.99870 * 2 1 3 5 5 C 1.52999 * 109.47091 * 119.99898 * 2 1 3 6 6 N 1.46907 * 109.46753 * 59.99932 * 5 2 1 7 7 C 1.46903 * 110.99710 * 179.97438 * 6 5 2 8 8 H 1.09004 * 109.47141 * 325.00107 * 7 6 5 9 9 C 1.50703 * 109.47085 * 85.00284 * 7 6 5 10 10 H 1.08000 * 119.99801 * 35.12181 * 9 7 6 11 11 C 1.37877 * 120.00070 * 215.13221 * 9 7 6 12 12 N 1.31520 * 120.00095 * 0.57941 * 11 9 7 13 13 Si 1.86797 * 120.00015 * 180.58894 * 11 9 7 14 14 H 1.48501 * 109.47043 * 89.99836 * 13 11 9 15 15 H 1.48498 * 109.46987 * 209.99152 * 13 11 9 16 16 H 1.48500 * 109.47150 * 329.99196 * 13 11 9 17 17 C 1.50699 * 109.47155 * 205.00266 * 7 6 5 18 18 C 1.38238 * 119.99851 * 313.64360 * 17 7 6 19 19 C 1.38235 * 119.99892 * 179.81321 * 18 17 7 20 20 C 1.38237 * 119.99723 * 0.39678 * 19 18 17 21 21 C 1.38229 * 120.00458 * 359.85705 * 20 19 18 22 22 C 1.38234 * 119.99916 * 133.92127 * 17 7 6 23 23 H 1.08996 * 109.47396 * 299.99968 * 1 2 3 24 24 H 1.09004 * 109.46938 * 59.99972 * 1 2 3 25 25 H 1.09005 * 109.47219 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46557 * 180.02562 * 3 2 1 27 27 H 1.08995 * 109.47073 * 299.99766 * 3 2 1 28 28 H 1.08996 * 109.46988 * 59.99782 * 3 2 1 29 29 H 1.09001 * 109.47027 * 300.00311 * 4 2 1 30 30 H 1.09004 * 109.47090 * 60.00251 * 4 2 1 31 31 H 1.08996 * 109.46990 * 179.97438 * 4 2 1 32 32 H 1.08996 * 109.47110 * 300.00309 * 5 2 1 33 33 H 1.09000 * 109.47275 * 179.97438 * 5 2 1 34 34 H 1.00893 * 111.00037 * 303.94985 * 6 5 2 35 35 H 0.96999 * 120.00349 * 180.02562 * 12 11 9 36 36 H 1.07994 * 119.99959 * 359.97438 * 18 17 7 37 37 H 1.07996 * 120.00039 * 180.23046 * 19 18 17 38 38 H 1.08008 * 119.99493 * 179.83838 * 20 19 18 39 39 H 1.07995 * 120.00240 * 179.97438 * 21 20 19 40 40 H 1.07989 * 120.00227 * 359.97351 * 22 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0400 -0.7212 1.2493 6 7 1.5502 -2.1063 1.2492 7 6 2.0217 -2.8313 2.4366 8 1 3.0238 -2.4902 2.6966 9 6 1.0870 -2.5692 3.5893 10 1 0.0282 -2.4540 3.4105 11 6 1.5836 -2.4763 4.8722 12 7 2.8745 -2.6050 5.0886 13 14 0.4230 -2.1678 6.3029 14 1 -0.0496 -3.4667 6.8459 15 1 1.1372 -1.4172 7.3667 16 1 -0.7413 -1.3743 5.8337 17 6 2.0547 -4.3090 2.1427 18 6 0.9782 -4.9144 1.5217 19 6 1.0101 -6.2691 1.2486 20 6 2.1150 -7.0200 1.6038 21 6 3.1893 -6.4157 2.2294 22 6 3.1591 -5.0601 2.4991 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 3.1300 1.4424 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6766 1.9563 0.8899 29 1 1.6766 -1.7489 -1.2492 30 1 1.6767 -0.2074 -2.1393 31 1 3.1300 -0.7209 -1.2495 32 1 1.6766 -0.2074 2.1392 33 1 3.1300 -0.7216 1.2491 34 1 0.5438 -2.1339 1.1843 35 1 3.2238 -2.5400 5.9912 36 1 0.1134 -4.3285 1.2477 37 1 0.1706 -6.7414 0.7601 38 1 2.1388 -8.0790 1.3927 39 1 4.0524 -7.0024 2.5073 40 1 3.9984 -4.5880 2.9878 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055017620.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:38 Heat of formation + Delta-G solvation = -12.152840 kcal Electronic energy + Delta-G solvation = -18324.185650 eV Core-core repulsion = 15716.093227 eV Total energy + Delta-G solvation = -2608.092423 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.02278 -38.78963 -36.13401 -33.87467 -31.58984 -31.41089 -28.32157 -28.07895 -27.93407 -25.87205 -24.11041 -22.98915 -21.43299 -19.62875 -18.70469 -17.52140 -16.78188 -16.21575 -15.84894 -15.61822 -15.35561 -15.03094 -14.71402 -14.23918 -13.97580 -13.79706 -13.56441 -13.43756 -13.12122 -12.93837 -12.78521 -12.74560 -12.51250 -12.41609 -12.08799 -11.89756 -11.72530 -11.51303 -11.40926 -11.34166 -11.16993 -10.61678 -9.53862 -9.29311 -8.98356 -8.11405 -6.31480 0.78773 0.86250 1.34377 1.35952 1.44217 2.35498 3.07340 3.28053 3.71384 4.01558 4.09079 4.24335 4.29003 4.34842 4.47494 4.66862 4.71547 4.77778 4.88368 4.92396 4.96587 5.01134 5.05737 5.09574 5.13899 5.19318 5.20530 5.31658 5.40679 5.45892 5.50502 5.60377 5.63358 5.69899 5.83428 5.92513 6.02113 6.22479 6.36199 6.48037 6.89364 6.97034 7.37923 8.86208 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.013541 B = 0.009534 C = 0.006441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.254379 B = 2936.305744 C = 4345.978509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.066 4.066 3 C -0.136 4.136 4 C -0.121 4.121 5 C 0.086 3.914 6 N -0.674 5.674 7 C 0.236 3.764 8 H 0.030 0.970 9 C -0.541 4.541 10 H 0.052 0.948 11 C 0.025 3.975 12 N -0.911 5.911 13 Si 0.947 3.053 14 H -0.279 1.279 15 H -0.284 1.284 16 H -0.267 1.267 17 C -0.035 4.035 18 C -0.124 4.124 19 C -0.127 4.127 20 C -0.148 4.148 21 C -0.130 4.130 22 C -0.143 4.143 23 H 0.042 0.958 24 H 0.072 0.928 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.074 0.926 28 H 0.046 0.954 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.041 0.959 32 H 0.003 0.997 33 H 0.040 0.960 34 H 0.329 0.671 35 H 0.262 0.738 36 H 0.112 0.888 37 H 0.141 0.859 38 H 0.144 0.856 39 H 0.130 0.870 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.103 0.197 -9.755 10.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.066 4.066 3 C -0.193 4.193 4 C -0.179 4.179 5 C -0.044 4.044 6 N -0.303 5.303 7 C 0.127 3.873 8 H 0.048 0.952 9 C -0.580 4.580 10 H 0.070 0.930 11 C -0.177 4.177 12 N -0.550 5.550 13 Si 0.772 3.228 14 H -0.204 1.204 15 H -0.209 1.209 16 H -0.192 1.192 17 C -0.036 4.036 18 C -0.142 4.142 19 C -0.145 4.145 20 C -0.166 4.166 21 C -0.148 4.148 22 C -0.161 4.161 23 H 0.061 0.939 24 H 0.091 0.909 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.093 0.907 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.060 0.940 32 H 0.022 0.978 33 H 0.058 0.942 34 H 0.147 0.853 35 H 0.071 0.929 36 H 0.130 0.870 37 H 0.159 0.841 38 H 0.162 0.838 39 H 0.148 0.852 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.447 -0.011 -10.020 10.315 hybrid contribution -0.678 0.652 2.210 2.402 sum -3.125 0.641 -7.810 8.437 Atomic orbital electron populations 1.21817 0.94276 1.01648 1.01624 1.20582 0.96070 0.95257 0.94704 1.21809 1.00794 0.94724 1.01999 1.21641 1.00001 1.00417 0.95812 1.21730 0.97900 0.89115 0.95670 1.60926 1.15301 1.13023 1.41058 1.18091 0.95897 0.87183 0.86137 0.95159 1.21868 0.93980 1.49045 0.93138 0.92966 1.25669 0.96266 0.94419 1.01296 1.70021 1.13073 1.50145 1.21719 0.85733 0.79403 0.78168 0.79449 1.20448 1.20918 1.19181 1.20420 0.92874 0.97575 0.92774 1.20930 0.98004 0.95188 1.00112 1.21357 0.99007 0.93593 1.00547 1.21241 0.93884 1.00513 1.00972 1.21261 0.99663 0.94015 0.99871 1.21037 0.98493 0.95120 1.01493 0.93863 0.90932 0.92900 0.93034 0.90740 0.93444 0.92773 0.91777 0.93986 0.97837 0.94187 0.85327 0.92862 0.86952 0.84111 0.83817 0.85189 0.89050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.70 8.14 71.98 0.59 -3.11 16 2 C -0.07 -1.95 0.85 -52.18 -0.04 -1.99 16 3 C -0.14 -3.46 8.47 71.98 0.61 -2.85 16 4 C -0.12 -3.35 8.32 71.98 0.60 -2.75 16 5 C 0.09 3.39 4.44 86.30 0.38 3.77 16 6 N -0.67 -28.30 5.06 -499.33 -2.52 -30.82 16 7 C 0.24 11.77 2.30 43.42 0.10 11.87 16 8 H 0.03 1.75 6.75 -2.38 -0.02 1.73 16 9 C -0.54 -29.04 8.06 25.60 0.21 -28.83 16 10 H 0.05 2.77 7.76 -2.91 -0.02 2.75 16 11 C 0.02 1.35 5.46 84.65 0.46 1.81 16 12 N -0.91 -52.57 12.78 21.45 0.27 -52.29 16 13 Si 0.95 43.72 29.54 68.60 2.03 45.75 16 14 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 15 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 16 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 17 C -0.04 -1.65 4.93 -19.87 -0.10 -1.75 16 18 C -0.12 -5.04 9.26 22.27 0.21 -4.83 16 19 C -0.13 -4.33 10.05 22.27 0.22 -4.11 16 20 C -0.15 -4.85 10.05 22.27 0.22 -4.63 16 21 C -0.13 -4.86 10.05 22.27 0.22 -4.63 16 22 C -0.14 -6.52 9.67 22.27 0.22 -6.30 16 23 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 24 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 25 H 0.05 1.50 6.57 -2.38 -0.02 1.48 16 26 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.05 1.65 7.60 -2.39 -0.02 1.63 16 30 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 31 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.00 0.15 8.00 -2.39 -0.02 0.13 16 33 H 0.04 1.69 8.05 -2.39 -0.02 1.67 16 34 H 0.33 13.29 5.93 -89.70 -0.53 12.76 16 35 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 36 H 0.11 4.36 7.48 -2.91 -0.02 4.33 16 37 H 0.14 3.75 8.06 -2.91 -0.02 3.72 16 38 H 0.14 3.57 8.06 -2.91 -0.02 3.55 16 39 H 0.13 4.09 8.06 -2.91 -0.02 4.06 16 40 H 0.09 4.52 7.99 -2.92 -0.02 4.49 16 Total: -1.00 -59.88 324.36 4.13 -55.75 By element: Atomic # 1 Polarization: 29.49 SS G_CDS: 0.46 Total: 29.95 kcal Atomic # 6 Polarization: -52.23 SS G_CDS: 3.90 Total: -48.34 kcal Atomic # 7 Polarization: -80.86 SS G_CDS: -2.25 Total: -83.12 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Total: -59.88 4.13 -55.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055017620.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.602 kcal (2) G-P(sol) polarization free energy of solvation -59.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds