Wall clock time and date at job start Mon Mar 30 2020 05:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 109.46748 * 2 1 4 4 C 1.52992 * 109.47292 * 239.99918 * 2 1 3 5 5 C 1.52994 * 109.47261 * 119.99481 * 2 1 3 6 6 N 1.46904 * 109.47016 * 60.00176 * 5 2 1 7 7 C 1.46904 * 111.00010 * 179.97438 * 6 5 2 8 8 H 1.09005 * 109.46774 * 35.00028 * 7 6 5 9 9 C 1.50701 * 109.47103 * 275.00047 * 7 6 5 10 10 H 1.08003 * 120.00041 * 125.29951 * 9 7 6 11 11 C 1.37878 * 119.99816 * 305.30444 * 9 7 6 12 12 N 1.31514 * 120.00188 * 9.52591 * 11 9 7 13 13 Si 1.86806 * 119.99588 * 189.53358 * 11 9 7 14 14 H 1.48497 * 109.47320 * 359.97438 * 13 11 9 15 15 H 1.48495 * 109.47183 * 119.99875 * 13 11 9 16 16 H 1.48507 * 109.46551 * 239.99720 * 13 11 9 17 17 C 1.50703 * 109.46774 * 155.00034 * 7 6 5 18 18 C 1.38234 * 120.00188 * 32.57458 * 17 7 6 19 19 C 1.38233 * 119.99885 * 179.97438 * 18 17 7 20 20 C 1.38235 * 119.99883 * 359.95193 * 19 18 17 21 21 C 1.38226 * 120.00073 * 0.02562 * 20 19 18 22 22 C 1.38231 * 119.99536 * 212.54893 * 17 7 6 23 23 H 1.09003 * 109.47363 * 300.00376 * 1 2 3 24 24 H 1.09000 * 109.47196 * 60.00400 * 1 2 3 25 25 H 1.08996 * 109.47105 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46890 * 179.97438 * 3 2 1 27 27 H 1.09000 * 109.46945 * 299.99753 * 3 2 1 28 28 H 1.08997 * 109.47377 * 60.00145 * 3 2 1 29 29 H 1.09000 * 109.47107 * 299.99484 * 4 2 1 30 30 H 1.09000 * 109.47260 * 59.99721 * 4 2 1 31 31 H 1.08998 * 109.47213 * 179.97438 * 4 2 1 32 32 H 1.09003 * 109.47049 * 300.00335 * 5 2 1 33 33 H 1.09002 * 109.47437 * 180.02562 * 5 2 1 34 34 H 1.00901 * 110.99753 * 303.95532 * 6 5 2 35 35 H 0.96998 * 119.99380 * 180.02562 * 12 11 9 36 36 H 1.08001 * 119.99508 * 359.97413 * 18 17 7 37 37 H 1.08003 * 119.99836 * 179.97438 * 19 18 17 38 38 H 1.08002 * 119.99719 * 179.71860 * 20 19 18 39 39 H 1.08007 * 119.99781 * 179.97438 * 21 20 19 40 40 H 1.08003 * 120.00365 * 0.02562 * 22 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2491 5 6 2.0400 -0.7211 1.2492 6 7 1.5503 -2.1061 1.2493 7 6 2.0219 -2.8312 2.4368 8 1 2.0616 -2.1496 3.2866 9 6 3.3980 -3.3860 2.1730 10 1 4.2115 -3.1542 2.8446 11 6 3.6185 -4.1893 1.0744 12 7 2.6846 -4.3205 0.1577 13 14 5.2436 -5.0915 0.8881 14 1 6.1191 -4.7785 2.0460 15 1 4.9945 -6.5545 0.8365 16 1 5.9092 -4.6581 -0.3667 17 6 1.0745 -3.9623 2.7438 18 6 0.4184 -4.6127 1.7155 19 6 -0.4502 -5.6505 1.9971 20 6 -0.6618 -6.0386 3.3069 21 6 -0.0054 -5.3885 4.3350 22 6 0.8621 -4.3496 4.0536 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 3.1299 1.4426 0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6766 1.9564 0.8900 29 1 1.6767 -1.7489 -1.2491 30 1 1.6766 -0.2075 -2.1392 31 1 3.1300 -0.7208 -1.2494 32 1 1.6766 -0.2072 2.1392 33 1 3.1300 -0.7207 1.2495 34 1 0.5438 -2.1338 1.1844 35 1 2.8397 -4.8860 -0.6150 36 1 0.5844 -4.3099 0.6922 37 1 -0.9631 -6.1585 1.1937 38 1 -1.3439 -6.8465 3.5272 39 1 -0.1711 -5.6914 5.3584 40 1 1.3747 -3.8415 4.8570 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055017623.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:41 Heat of formation + Delta-G solvation = 18.604465 kcal Electronic energy + Delta-G solvation = -18697.837737 eV Core-core repulsion = 16091.079051 eV Total energy + Delta-G solvation = -2606.758686 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.40214 -37.20306 -34.32606 -31.57190 -29.99804 -29.56732 -26.92126 -26.52857 -26.37287 -24.11423 -22.15127 -21.26310 -19.83759 -18.09577 -16.26580 -15.81402 -14.85877 -14.60920 -14.09949 -14.02313 -13.76778 -13.41075 -13.09806 -12.56494 -12.38357 -12.18468 -11.97707 -11.69628 -11.63148 -11.33227 -11.04966 -10.95281 -10.87746 -10.66277 -10.39507 -10.12150 -10.08771 -9.99754 -9.63966 -9.55191 -9.19248 -8.41014 -7.86281 -7.47847 -6.73755 -5.79426 -3.96646 2.42811 2.52504 3.33384 3.42047 3.45502 4.49345 4.91382 5.26131 5.39714 5.43047 5.48972 5.74275 5.78321 5.91159 5.97884 6.01572 6.10956 6.18718 6.23326 6.35255 6.37893 6.41350 6.54810 6.61158 6.71775 6.73272 6.77131 6.85136 6.91517 7.06421 7.14698 7.23196 7.34343 7.45383 7.63497 7.91640 7.95313 8.18995 8.26766 8.52416 8.90774 9.15530 9.68937 11.13963 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.015944 B = 0.009742 C = 0.007100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.733301 B = 2873.389709 C = 3942.516587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.066 4.066 3 C -0.138 4.138 4 C -0.123 4.123 5 C 0.084 3.916 6 N -0.637 5.637 7 C 0.249 3.751 8 H -0.003 1.003 9 C -0.520 4.520 10 H 0.052 0.948 11 C 0.093 3.907 12 N -0.824 5.824 13 Si 0.874 3.126 14 H -0.276 1.276 15 H -0.286 1.286 16 H -0.286 1.286 17 C -0.041 4.041 18 C -0.080 4.080 19 C -0.143 4.143 20 C -0.153 4.153 21 C -0.141 4.141 22 C -0.134 4.134 23 H 0.043 0.957 24 H 0.044 0.956 25 H 0.062 0.938 26 H 0.051 0.949 27 H 0.047 0.953 28 H 0.046 0.954 29 H 0.083 0.917 30 H 0.027 0.973 31 H 0.045 0.955 32 H -0.002 1.002 33 H 0.068 0.932 34 H 0.305 0.695 35 H 0.251 0.749 36 H 0.160 0.840 37 H 0.102 0.898 38 H 0.100 0.900 39 H 0.102 0.898 40 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.217 4.523 0.315 6.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.066 4.066 3 C -0.196 4.196 4 C -0.180 4.180 5 C -0.046 4.046 6 N -0.267 5.267 7 C 0.142 3.858 8 H 0.014 0.986 9 C -0.558 4.558 10 H 0.070 0.930 11 C -0.115 4.115 12 N -0.458 5.458 13 Si 0.702 3.298 14 H -0.201 1.201 15 H -0.212 1.212 16 H -0.212 1.212 17 C -0.042 4.042 18 C -0.098 4.098 19 C -0.162 4.162 20 C -0.171 4.171 21 C -0.159 4.159 22 C -0.152 4.152 23 H 0.062 0.938 24 H 0.064 0.936 25 H 0.081 0.919 26 H 0.071 0.929 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.102 0.898 30 H 0.046 0.954 31 H 0.064 0.936 32 H 0.016 0.984 33 H 0.086 0.914 34 H 0.123 0.877 35 H 0.062 0.938 36 H 0.177 0.823 37 H 0.121 0.879 38 H 0.118 0.882 39 H 0.120 0.880 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -4.746 4.206 -0.273 6.348 hybrid contribution 0.518 -0.388 0.669 0.931 sum -4.228 3.818 0.396 5.711 Atomic orbital electron populations 1.21858 0.95767 1.01861 1.00187 1.20544 0.94738 0.94055 0.97308 1.21852 1.00861 0.96379 1.00520 1.21652 1.00434 1.01917 0.94032 1.21781 1.00431 0.89582 0.92836 1.60823 1.12234 1.10112 1.43554 1.18147 0.92731 0.88127 0.86788 0.98563 1.20837 0.93123 1.31677 1.10118 0.92985 1.24792 0.95645 0.95733 0.95292 1.70009 1.32130 1.35208 1.08437 0.86858 0.85153 0.79971 0.77826 1.20095 1.21192 1.21208 1.20558 0.92668 0.99201 0.91785 1.21759 0.92325 0.93764 1.01945 1.21163 1.00380 0.99125 0.95507 1.20807 1.01881 1.00831 0.93597 1.20792 0.99468 0.97858 0.97783 1.20914 0.99203 0.98408 0.96712 0.93835 0.93644 0.91888 0.92944 0.93416 0.93524 0.89836 0.95354 0.93581 0.98436 0.91375 0.87682 0.93827 0.82284 0.87944 0.88219 0.88032 0.87784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 8.14 37.16 0.30 -1.79 16 2 C -0.07 -1.09 0.84 -154.51 -0.13 -1.22 16 3 C -0.14 -1.97 8.47 37.16 0.31 -1.66 16 4 C -0.12 -2.17 8.32 37.15 0.31 -1.86 16 5 C 0.08 1.64 4.44 -3.82 -0.02 1.62 16 6 N -0.64 -13.72 3.55 -109.18 -0.39 -14.11 16 7 C 0.25 5.91 2.49 -70.01 -0.17 5.74 16 8 H 0.00 -0.08 7.73 -51.93 -0.40 -0.48 16 9 C -0.52 -13.69 8.62 -34.44 -0.30 -13.99 16 10 H 0.05 1.41 7.83 -52.48 -0.41 1.00 16 11 C 0.09 2.43 5.20 -17.82 -0.09 2.34 16 12 N -0.82 -21.24 9.23 55.43 0.51 -20.73 16 13 Si 0.87 20.88 29.55 -169.99 -5.02 15.85 16 14 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 15 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 16 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 17 C -0.04 -0.93 4.65 -104.62 -0.49 -1.42 16 18 C -0.08 -1.77 7.66 -39.58 -0.30 -2.08 16 19 C -0.14 -2.87 10.05 -39.58 -0.40 -3.27 16 20 C -0.15 -2.86 10.05 -39.59 -0.40 -3.26 16 21 C -0.14 -2.68 10.05 -39.59 -0.40 -3.07 16 22 C -0.13 -2.82 9.69 -39.58 -0.38 -3.20 16 23 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.06 1.01 6.57 -51.93 -0.34 0.66 16 26 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.08 1.69 7.60 -51.93 -0.39 1.30 16 30 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.00 -0.04 8.06 -51.93 -0.42 -0.46 16 33 H 0.07 1.48 8.00 -51.93 -0.42 1.06 16 34 H 0.31 6.33 5.72 -39.29 -0.22 6.11 16 35 H 0.25 6.37 8.31 -40.82 -0.34 6.03 16 36 H 0.16 3.77 5.58 -52.49 -0.29 3.48 16 37 H 0.10 1.82 8.06 -52.48 -0.42 1.40 16 38 H 0.10 1.58 8.06 -52.49 -0.42 1.16 16 39 H 0.10 1.64 8.06 -52.48 -0.42 1.22 16 40 H 0.10 2.06 8.06 -52.48 -0.42 1.63 16 LS Contribution 316.93 15.07 4.78 4.78 Total: -1.00 -25.92 316.93 -8.96 -34.88 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -6.69 Total: 6.45 kcal Atomic # 6 Polarization: -24.97 SS G_CDS: -2.15 Total: -27.12 kcal Atomic # 7 Polarization: -34.96 SS G_CDS: 0.12 Total: -34.84 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -25.92 -8.96 -34.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055017623.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.487 kcal (2) G-P(sol) polarization free energy of solvation -25.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds