Wall clock time and date at job start Mon Mar 30 2020 05:57:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 109.46748 * 2 1 4 4 C 1.52992 * 109.47292 * 239.99918 * 2 1 3 5 5 C 1.52994 * 109.47261 * 119.99481 * 2 1 3 6 6 N 1.46904 * 109.47016 * 60.00176 * 5 2 1 7 7 C 1.46904 * 111.00010 * 179.97438 * 6 5 2 8 8 H 1.09005 * 109.46774 * 35.00028 * 7 6 5 9 9 C 1.50701 * 109.47103 * 275.00047 * 7 6 5 10 10 H 1.08003 * 120.00041 * 125.29951 * 9 7 6 11 11 C 1.37878 * 119.99816 * 305.30444 * 9 7 6 12 12 N 1.31514 * 120.00188 * 9.52591 * 11 9 7 13 13 Si 1.86806 * 119.99588 * 189.53358 * 11 9 7 14 14 H 1.48497 * 109.47320 * 359.97438 * 13 11 9 15 15 H 1.48495 * 109.47183 * 119.99875 * 13 11 9 16 16 H 1.48507 * 109.46551 * 239.99720 * 13 11 9 17 17 C 1.50703 * 109.46774 * 155.00034 * 7 6 5 18 18 C 1.38234 * 120.00188 * 32.57458 * 17 7 6 19 19 C 1.38233 * 119.99885 * 179.97438 * 18 17 7 20 20 C 1.38235 * 119.99883 * 359.95193 * 19 18 17 21 21 C 1.38226 * 120.00073 * 0.02562 * 20 19 18 22 22 C 1.38231 * 119.99536 * 212.54893 * 17 7 6 23 23 H 1.09003 * 109.47363 * 300.00376 * 1 2 3 24 24 H 1.09000 * 109.47196 * 60.00400 * 1 2 3 25 25 H 1.08996 * 109.47105 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46890 * 179.97438 * 3 2 1 27 27 H 1.09000 * 109.46945 * 299.99753 * 3 2 1 28 28 H 1.08997 * 109.47377 * 60.00145 * 3 2 1 29 29 H 1.09000 * 109.47107 * 299.99484 * 4 2 1 30 30 H 1.09000 * 109.47260 * 59.99721 * 4 2 1 31 31 H 1.08998 * 109.47213 * 179.97438 * 4 2 1 32 32 H 1.09003 * 109.47049 * 300.00335 * 5 2 1 33 33 H 1.09002 * 109.47437 * 180.02562 * 5 2 1 34 34 H 1.00901 * 110.99753 * 303.95532 * 6 5 2 35 35 H 0.96998 * 119.99380 * 180.02562 * 12 11 9 36 36 H 1.08001 * 119.99508 * 359.97413 * 18 17 7 37 37 H 1.08003 * 119.99836 * 179.97438 * 19 18 17 38 38 H 1.08002 * 119.99719 * 179.71860 * 20 19 18 39 39 H 1.08007 * 119.99781 * 179.97438 * 21 20 19 40 40 H 1.08003 * 120.00365 * 0.02562 * 22 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2491 5 6 2.0400 -0.7211 1.2492 6 7 1.5503 -2.1061 1.2493 7 6 2.0219 -2.8312 2.4368 8 1 2.0616 -2.1496 3.2866 9 6 3.3980 -3.3860 2.1730 10 1 4.2115 -3.1542 2.8446 11 6 3.6185 -4.1893 1.0744 12 7 2.6846 -4.3205 0.1577 13 14 5.2436 -5.0915 0.8881 14 1 6.1191 -4.7785 2.0460 15 1 4.9945 -6.5545 0.8365 16 1 5.9092 -4.6581 -0.3667 17 6 1.0745 -3.9623 2.7438 18 6 0.4184 -4.6127 1.7155 19 6 -0.4502 -5.6505 1.9971 20 6 -0.6618 -6.0386 3.3069 21 6 -0.0054 -5.3885 4.3350 22 6 0.8621 -4.3496 4.0536 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 3.1299 1.4426 0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6766 1.9564 0.8900 29 1 1.6767 -1.7489 -1.2491 30 1 1.6766 -0.2075 -2.1392 31 1 3.1300 -0.7208 -1.2494 32 1 1.6766 -0.2072 2.1392 33 1 3.1300 -0.7207 1.2495 34 1 0.5438 -2.1338 1.1844 35 1 2.8397 -4.8860 -0.6150 36 1 0.5844 -4.3099 0.6922 37 1 -0.9631 -6.1585 1.1937 38 1 -1.3439 -6.8465 3.5272 39 1 -0.1711 -5.6914 5.3584 40 1 1.3747 -3.8415 4.8570 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055017623.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:40 Heat of formation + Delta-G solvation = 7.186333 kcal Electronic energy + Delta-G solvation = -18698.332865 eV Core-core repulsion = 16091.079051 eV Total energy + Delta-G solvation = -2607.253813 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.02544 -38.65870 -36.02061 -33.47831 -31.59166 -31.16148 -28.39460 -27.97518 -27.87543 -25.81096 -23.86369 -22.84660 -21.56091 -19.50038 -18.14697 -17.44992 -16.74672 -16.15321 -15.72911 -15.56131 -15.27594 -14.94669 -14.58995 -14.21813 -13.96356 -13.76063 -13.51757 -13.26917 -13.09462 -12.83566 -12.69650 -12.63833 -12.41635 -12.34452 -12.06944 -11.80650 -11.50748 -11.43209 -11.31187 -11.13276 -11.00082 -10.39709 -9.46038 -9.14115 -8.49746 -7.76228 -6.00801 0.82057 0.94066 1.39551 1.44557 1.50979 2.50833 3.25818 3.38019 3.82926 4.07757 4.15759 4.29851 4.37013 4.38020 4.52219 4.68885 4.71072 4.82479 4.88428 4.95378 5.00858 5.03792 5.04188 5.15604 5.18192 5.22068 5.27061 5.37686 5.45858 5.47199 5.62916 5.68991 5.82094 5.85449 5.87278 6.03620 6.25738 6.36832 6.54913 6.66051 7.09448 7.33000 7.65452 9.11742 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.015944 B = 0.009742 C = 0.007100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.733301 B = 2873.389709 C = 3942.516587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.063 4.063 3 C -0.133 4.133 4 C -0.115 4.115 5 C 0.087 3.913 6 N -0.638 5.638 7 C 0.251 3.749 8 H -0.019 1.019 9 C -0.543 4.543 10 H 0.031 0.969 11 C 0.063 3.937 12 N -0.827 5.827 13 Si 0.919 3.081 14 H -0.281 1.281 15 H -0.286 1.286 16 H -0.284 1.284 17 C -0.064 4.064 18 C -0.095 4.095 19 C -0.149 4.149 20 C -0.146 4.146 21 C -0.136 4.136 22 C -0.150 4.150 23 H 0.052 0.948 24 H 0.066 0.934 25 H 0.047 0.953 26 H 0.045 0.955 27 H 0.068 0.932 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.027 0.973 32 H 0.000 1.000 33 H 0.038 0.962 34 H 0.310 0.690 35 H 0.250 0.750 36 H 0.140 0.860 37 H 0.124 0.876 38 H 0.137 0.863 39 H 0.136 0.864 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.720 4.248 0.358 7.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.063 4.063 3 C -0.191 4.191 4 C -0.172 4.172 5 C -0.043 4.043 6 N -0.269 5.269 7 C 0.143 3.857 8 H -0.001 1.001 9 C -0.581 4.581 10 H 0.050 0.950 11 C -0.144 4.144 12 N -0.460 5.460 13 Si 0.747 3.253 14 H -0.207 1.207 15 H -0.212 1.212 16 H -0.210 1.210 17 C -0.065 4.065 18 C -0.114 4.114 19 C -0.167 4.167 20 C -0.164 4.164 21 C -0.154 4.154 22 C -0.169 4.169 23 H 0.071 0.929 24 H 0.085 0.915 25 H 0.067 0.933 26 H 0.065 0.935 27 H 0.087 0.913 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.046 0.954 32 H 0.018 0.982 33 H 0.056 0.944 34 H 0.129 0.871 35 H 0.060 0.940 36 H 0.158 0.842 37 H 0.142 0.858 38 H 0.155 0.845 39 H 0.154 0.846 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -6.256 3.937 -0.234 7.395 hybrid contribution 0.942 -0.315 0.698 1.214 sum -5.314 3.621 0.463 6.447 Atomic orbital electron populations 1.21788 0.94173 1.01397 1.01700 1.20525 0.95980 0.94996 0.94848 1.21795 1.00530 0.94667 1.02075 1.21540 0.99145 1.00668 0.95848 1.21767 0.98624 0.89115 0.94818 1.60653 1.12495 1.11143 1.42584 1.18020 0.92292 0.88548 0.86800 1.00137 1.20944 0.94096 1.32785 1.10281 0.95028 1.25188 0.97685 0.96251 0.95234 1.70117 1.32599 1.35041 1.08222 0.86157 0.82809 0.78944 0.77388 1.20665 1.21190 1.20990 1.20522 0.93658 0.99367 0.92976 1.21604 0.93755 0.95134 1.00864 1.21432 0.99726 0.98350 0.97154 1.21232 1.01481 1.01014 0.92677 1.21178 0.97982 0.96510 0.99768 1.21115 1.00142 0.99501 0.96118 0.92938 0.91468 0.93349 0.93538 0.91265 0.92533 0.92809 0.92790 0.95417 0.98184 0.94353 0.87127 0.94039 0.84245 0.85821 0.84473 0.84647 0.87457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.80 8.14 71.98 0.59 -3.21 16 2 C -0.06 -2.05 0.84 -52.18 -0.04 -2.09 16 3 C -0.13 -3.56 8.47 71.98 0.61 -2.95 16 4 C -0.11 -4.04 8.32 71.98 0.60 -3.44 16 5 C 0.09 3.49 4.44 86.30 0.38 3.87 16 6 N -0.64 -28.47 3.55 -499.33 -1.77 -30.24 16 7 C 0.25 12.39 2.49 43.42 0.11 12.50 16 8 H -0.02 -0.96 7.73 -2.38 -0.02 -0.98 16 9 C -0.54 -29.74 8.62 25.60 0.22 -29.52 16 10 H 0.03 1.80 7.83 -2.91 -0.02 1.77 16 11 C 0.06 3.38 5.20 84.65 0.44 3.82 16 12 N -0.83 -43.51 9.23 21.45 0.20 -43.31 16 13 Si 0.92 43.64 29.55 68.60 2.03 45.66 16 14 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 15 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 16 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 17 C -0.06 -2.97 4.65 -19.87 -0.09 -3.06 16 18 C -0.10 -4.24 7.66 22.27 0.17 -4.07 16 19 C -0.15 -5.66 10.05 22.27 0.22 -5.44 16 20 C -0.15 -4.97 10.05 22.27 0.22 -4.75 16 21 C -0.14 -4.81 10.05 22.27 0.22 -4.59 16 22 C -0.15 -6.24 9.69 22.27 0.22 -6.03 16 23 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 24 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 25 H 0.05 1.51 6.57 -2.39 -0.02 1.50 16 26 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.05 2.21 7.60 -2.39 -0.02 2.19 16 30 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.00 0.01 8.06 -2.39 -0.02 -0.01 16 33 H 0.04 1.75 8.00 -2.39 -0.02 1.73 16 34 H 0.31 13.26 5.72 -89.69 -0.51 12.74 16 35 H 0.25 12.84 8.31 -92.71 -0.77 12.07 16 36 H 0.14 6.75 5.58 -2.91 -0.02 6.73 16 37 H 0.12 4.10 8.06 -2.91 -0.02 4.08 16 38 H 0.14 3.66 8.06 -2.91 -0.02 3.63 16 39 H 0.14 3.82 8.06 -2.91 -0.02 3.80 16 40 H 0.11 4.26 8.06 -2.91 -0.02 4.24 16 Total: -1.00 -56.52 316.93 4.80 -51.72 By element: Atomic # 1 Polarization: 24.64 SS G_CDS: 0.48 Total: 25.12 kcal Atomic # 6 Polarization: -52.82 SS G_CDS: 3.87 Total: -48.95 kcal Atomic # 7 Polarization: -71.98 SS G_CDS: -1.58 Total: -73.55 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.66 kcal Total: -56.52 4.80 -51.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055017623.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.909 kcal (2) G-P(sol) polarization free energy of solvation -56.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds