Wall clock time and date at job start Mon Mar 30 2020 06:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52990 * 109.47236 * 2 1 4 4 H 1.09004 * 109.47659 * 304.99818 * 3 2 1 5 5 C 1.53004 * 109.47349 * 65.00206 * 3 2 1 6 6 C 1.53001 * 109.47074 * 185.00000 * 3 2 1 7 7 N 1.46906 * 109.47054 * 175.00185 * 6 3 2 8 8 C 1.46902 * 110.99805 * 180.02562 * 7 6 3 9 9 H 1.09002 * 109.47059 * 324.99172 * 8 7 6 10 10 C 1.50693 * 109.47488 * 84.99800 * 8 7 6 11 11 H 1.08006 * 120.00068 * 35.10693 * 10 8 7 12 12 C 1.37878 * 120.00294 * 215.10686 * 10 8 7 13 13 N 1.31511 * 119.99776 * 2.02720 * 12 10 8 14 14 Si 1.86802 * 120.00164 * 182.03038 * 12 10 8 15 15 H 1.48496 * 109.47038 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.47207 * 120.00172 * 14 12 10 17 17 H 1.48503 * 109.46949 * 239.99916 * 14 12 10 18 18 C 1.50696 * 109.46830 * 204.99758 * 8 7 6 19 19 C 1.38237 * 120.00418 * 313.98933 * 18 8 7 20 20 C 1.38228 * 120.00524 * 179.79170 * 19 18 8 21 21 C 1.38238 * 120.00054 * 0.43801 * 20 19 18 22 22 C 1.38236 * 119.99535 * 359.81116 * 21 20 19 23 23 C 1.38234 * 120.00214 * 134.26438 * 18 8 7 24 24 H 1.08997 * 109.47719 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46910 * 300.00020 * 1 2 3 26 26 H 1.08992 * 109.47075 * 59.99597 * 1 2 3 27 27 H 1.09001 * 109.47080 * 239.99457 * 2 1 3 28 28 H 1.09004 * 109.46852 * 120.00053 * 2 1 3 29 29 H 1.09001 * 109.47270 * 180.02562 * 5 3 2 30 30 H 1.09003 * 109.46724 * 299.99560 * 5 3 2 31 31 H 1.08996 * 109.47061 * 59.99909 * 5 3 2 32 32 H 1.08992 * 109.47138 * 55.00122 * 6 3 2 33 33 H 1.08998 * 109.47347 * 294.99463 * 6 3 2 34 34 H 1.00897 * 111.00122 * 56.04454 * 7 6 3 35 35 H 0.97003 * 120.00299 * 179.97438 * 13 12 10 36 36 H 1.08004 * 119.99811 * 359.97438 * 19 18 8 37 37 H 1.08001 * 120.00622 * 180.27093 * 20 19 18 38 38 H 1.07997 * 120.00401 * 179.84103 * 21 20 19 39 39 H 1.08004 * 119.99596 * 179.97438 * 22 21 20 40 40 H 1.08006 * 119.99973 * 359.97426 * 23 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6353 2.1265 1.3074 6 6 3.5648 1.4442 -0.1257 7 7 4.0446 2.8275 -0.2461 8 6 5.5079 2.8682 -0.3696 9 1 5.9457 2.0725 0.2331 10 6 5.8957 2.6765 -1.8131 11 1 5.2746 3.0828 -2.5978 12 6 7.0434 1.9823 -2.1323 13 7 7.7785 1.4532 -1.1787 14 14 7.5543 1.7933 -3.9191 15 1 6.5647 2.4749 -4.7916 16 1 8.8936 2.4032 -4.1182 17 1 7.6106 0.3509 -4.2679 18 6 6.0158 4.2020 0.1140 19 6 5.3933 5.3675 -0.2924 20 6 5.8565 6.5907 0.1546 21 6 6.9479 6.6492 1.0010 22 6 7.5736 5.4840 1.4034 23 6 7.1077 4.2605 0.9597 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 1.9983 3.1543 1.3072 30 1 0.5490 2.1253 1.3969 31 1 2.0699 1.5875 2.1492 32 1 3.8570 0.8799 -1.0113 33 1 4.0030 0.9835 0.7597 34 1 3.7314 3.3879 0.5323 35 1 8.5858 0.9645 -1.4032 36 1 4.5431 5.3221 -0.9570 37 1 5.3674 7.5010 -0.1594 38 1 7.3114 7.6050 1.3483 39 1 8.4265 5.5297 2.0644 40 1 7.5966 3.3502 1.2741 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055019333.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:37 Heat of formation + Delta-G solvation = 0.684652 kcal Electronic energy + Delta-G solvation = -17993.089382 eV Core-core repulsion = 15385.553635 eV Total energy + Delta-G solvation = -2607.535747 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.47030 -37.01341 -34.53089 -32.19109 -30.55940 -29.98798 -28.80042 -26.42490 -25.44259 -23.07008 -21.92532 -21.30753 -19.86348 -19.39636 -16.54824 -15.90342 -15.08052 -14.93787 -14.66685 -14.09966 -13.95317 -13.67942 -13.06015 -12.90516 -12.74949 -12.51677 -12.04594 -11.88415 -11.79395 -11.68000 -11.47359 -10.98969 -10.88257 -10.80892 -10.44894 -10.26500 -10.19962 -10.17324 -9.83153 -9.60698 -9.47366 -8.53819 -8.04326 -7.69618 -7.23381 -6.04606 -4.08043 2.29230 2.31712 3.28552 3.36594 3.41940 4.39652 4.70574 5.02972 5.19651 5.26566 5.31024 5.58004 5.59165 5.66252 5.76073 5.77817 5.79388 5.86986 6.04122 6.14968 6.20949 6.25729 6.32731 6.34992 6.40844 6.45114 6.55322 6.59840 6.81965 6.85687 6.91347 7.00624 7.29492 7.32780 7.40040 7.73309 7.86245 7.92032 8.18666 8.24406 8.74644 9.05230 9.55453 11.00158 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.014018 B = 0.008134 C = 0.005695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.947233 B = 3441.456693 C = 4915.713280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.119 4.119 3 C -0.091 4.091 4 H 0.075 0.925 5 C -0.147 4.147 6 C 0.078 3.922 7 N -0.685 5.685 8 C 0.232 3.768 9 H 0.043 0.957 10 C -0.483 4.483 11 H 0.063 0.937 12 C 0.061 3.939 13 N -0.891 5.891 14 Si 0.894 3.106 15 H -0.271 1.271 16 H -0.284 1.284 17 H -0.285 1.285 18 C -0.037 4.037 19 C -0.110 4.110 20 C -0.134 4.134 21 C -0.152 4.152 22 C -0.131 4.131 23 C -0.113 4.113 24 H 0.047 0.953 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.062 0.938 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.049 0.951 31 H 0.047 0.953 32 H 0.074 0.926 33 H 0.013 0.987 34 H 0.312 0.688 35 H 0.261 0.739 36 H 0.120 0.880 37 H 0.106 0.894 38 H 0.104 0.896 39 H 0.106 0.894 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.127 2.024 4.816 9.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.157 4.157 3 C -0.110 4.110 4 H 0.093 0.907 5 C -0.204 4.204 6 C -0.052 4.052 7 N -0.315 5.315 8 C 0.125 3.875 9 H 0.061 0.939 10 C -0.521 4.521 11 H 0.082 0.918 12 C -0.141 4.141 13 N -0.529 5.529 14 Si 0.722 3.278 15 H -0.196 1.196 16 H -0.211 1.211 17 H -0.211 1.211 18 C -0.038 4.038 19 C -0.128 4.128 20 C -0.152 4.152 21 C -0.171 4.171 22 C -0.149 4.149 23 C -0.132 4.132 24 H 0.066 0.934 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.092 0.908 33 H 0.032 0.968 34 H 0.129 0.871 35 H 0.071 0.929 36 H 0.138 0.862 37 H 0.124 0.876 38 H 0.122 0.878 39 H 0.124 0.876 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -8.059 1.930 4.153 9.269 hybrid contribution 0.915 -0.303 -0.114 0.971 sum -7.143 1.627 4.039 8.366 Atomic orbital electron populations 1.21803 0.96429 1.00890 1.01645 1.21534 0.95246 0.97075 1.01847 1.21208 0.96579 0.95163 0.98061 0.90689 1.21882 1.00409 1.00753 0.97399 1.21790 0.92077 0.91385 0.99941 1.60812 1.14148 1.09777 1.46796 1.18426 0.82427 0.89471 0.97138 0.93939 1.21050 1.06944 1.33205 0.90928 0.91843 1.25026 0.96643 0.95019 0.97452 1.69911 1.15462 1.35679 1.31840 0.86494 0.78527 0.77667 0.85108 1.19563 1.21057 1.21080 1.20737 0.94324 0.97337 0.91423 1.20999 1.00537 0.91631 0.99653 1.21001 0.97569 0.97395 0.99269 1.20825 0.97968 0.97303 1.00975 1.20985 0.99792 0.93060 1.01070 1.21113 0.97044 0.97181 0.97860 0.93378 0.92805 0.92893 0.91956 0.92448 0.92477 0.93165 0.93402 0.90755 0.96840 0.87073 0.92930 0.86210 0.87576 0.87758 0.87598 0.86444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.67 37.16 0.36 -1.32 16 2 C -0.12 -1.58 5.40 -26.74 -0.14 -1.73 16 3 C -0.09 -1.38 2.60 -90.62 -0.24 -1.62 16 4 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 5 C -0.15 -1.98 8.72 37.16 0.32 -1.66 16 6 C 0.08 1.49 4.94 -3.82 -0.02 1.47 16 7 N -0.68 -14.22 5.84 -109.19 -0.64 -14.86 16 8 C 0.23 5.62 2.34 -70.02 -0.16 5.46 16 9 H 0.04 1.15 6.73 -51.93 -0.35 0.80 16 10 C -0.48 -13.00 8.30 -34.44 -0.29 -13.28 16 11 H 0.06 1.76 7.81 -52.48 -0.41 1.35 16 12 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 13 N -0.89 -25.03 12.78 55.43 0.71 -24.32 16 14 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 15 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 16 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 17 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 18 C -0.04 -0.84 4.65 -104.63 -0.49 -1.32 16 19 C -0.11 -2.26 9.08 -39.59 -0.36 -2.62 16 20 C -0.13 -2.44 10.05 -39.58 -0.40 -2.84 16 21 C -0.15 -2.69 10.05 -39.58 -0.40 -3.09 16 22 C -0.13 -2.48 10.05 -39.58 -0.40 -2.88 16 23 C -0.11 -2.47 9.67 -39.58 -0.38 -2.86 16 24 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.05 0.57 6.56 -51.93 -0.34 0.23 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.06 0.80 6.68 -51.93 -0.35 0.45 16 30 H 0.05 0.59 6.57 -51.93 -0.34 0.25 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.07 1.59 8.00 -51.93 -0.42 1.18 16 33 H 0.01 0.27 8.06 -51.93 -0.42 -0.15 16 34 H 0.31 6.00 6.40 -39.29 -0.25 5.74 16 35 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 36 H 0.12 2.44 7.91 -52.48 -0.41 2.03 16 37 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 38 H 0.10 1.53 8.06 -52.49 -0.42 1.11 16 39 H 0.11 1.73 8.06 -52.48 -0.42 1.31 16 40 H 0.12 2.68 8.00 -52.48 -0.42 2.26 16 LS Contribution 324.48 15.07 4.89 4.89 Total: -1.00 -27.64 324.48 -9.39 -37.03 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -6.65 Total: 7.56 kcal Atomic # 6 Polarization: -24.03 SS G_CDS: -2.68 Total: -26.71 kcal Atomic # 7 Polarization: -39.24 SS G_CDS: 0.07 Total: -39.17 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -27.64 -9.39 -37.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055019333.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.714 kcal (2) G-P(sol) polarization free energy of solvation -27.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds