Wall clock time and date at job start Mon Mar 30 2020 06:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52990 * 109.47236 * 2 1 4 4 H 1.09004 * 109.47659 * 304.99818 * 3 2 1 5 5 C 1.53004 * 109.47349 * 65.00206 * 3 2 1 6 6 C 1.53001 * 109.47074 * 185.00000 * 3 2 1 7 7 N 1.46906 * 109.47054 * 175.00185 * 6 3 2 8 8 C 1.46902 * 110.99805 * 180.02562 * 7 6 3 9 9 H 1.09002 * 109.47059 * 324.99172 * 8 7 6 10 10 C 1.50693 * 109.47488 * 84.99800 * 8 7 6 11 11 H 1.08006 * 120.00068 * 35.10693 * 10 8 7 12 12 C 1.37878 * 120.00294 * 215.10686 * 10 8 7 13 13 N 1.31511 * 119.99776 * 2.02720 * 12 10 8 14 14 Si 1.86802 * 120.00164 * 182.03038 * 12 10 8 15 15 H 1.48496 * 109.47038 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.47207 * 120.00172 * 14 12 10 17 17 H 1.48503 * 109.46949 * 239.99916 * 14 12 10 18 18 C 1.50696 * 109.46830 * 204.99758 * 8 7 6 19 19 C 1.38237 * 120.00418 * 313.98933 * 18 8 7 20 20 C 1.38228 * 120.00524 * 179.79170 * 19 18 8 21 21 C 1.38238 * 120.00054 * 0.43801 * 20 19 18 22 22 C 1.38236 * 119.99535 * 359.81116 * 21 20 19 23 23 C 1.38234 * 120.00214 * 134.26438 * 18 8 7 24 24 H 1.08997 * 109.47719 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46910 * 300.00020 * 1 2 3 26 26 H 1.08992 * 109.47075 * 59.99597 * 1 2 3 27 27 H 1.09001 * 109.47080 * 239.99457 * 2 1 3 28 28 H 1.09004 * 109.46852 * 120.00053 * 2 1 3 29 29 H 1.09001 * 109.47270 * 180.02562 * 5 3 2 30 30 H 1.09003 * 109.46724 * 299.99560 * 5 3 2 31 31 H 1.08996 * 109.47061 * 59.99909 * 5 3 2 32 32 H 1.08992 * 109.47138 * 55.00122 * 6 3 2 33 33 H 1.08998 * 109.47347 * 294.99463 * 6 3 2 34 34 H 1.00897 * 111.00122 * 56.04454 * 7 6 3 35 35 H 0.97003 * 120.00299 * 179.97438 * 13 12 10 36 36 H 1.08004 * 119.99811 * 359.97438 * 19 18 8 37 37 H 1.08001 * 120.00622 * 180.27093 * 20 19 18 38 38 H 1.07997 * 120.00401 * 179.84103 * 21 20 19 39 39 H 1.08004 * 119.99596 * 179.97438 * 22 21 20 40 40 H 1.08006 * 119.99973 * 359.97426 * 23 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6353 2.1265 1.3074 6 6 3.5648 1.4442 -0.1257 7 7 4.0446 2.8275 -0.2461 8 6 5.5079 2.8682 -0.3696 9 1 5.9457 2.0725 0.2331 10 6 5.8957 2.6765 -1.8131 11 1 5.2746 3.0828 -2.5978 12 6 7.0434 1.9823 -2.1323 13 7 7.7785 1.4532 -1.1787 14 14 7.5543 1.7933 -3.9191 15 1 6.5647 2.4749 -4.7916 16 1 8.8936 2.4032 -4.1182 17 1 7.6106 0.3509 -4.2679 18 6 6.0158 4.2020 0.1140 19 6 5.3933 5.3675 -0.2924 20 6 5.8565 6.5907 0.1546 21 6 6.9479 6.6492 1.0010 22 6 7.5736 5.4840 1.4034 23 6 7.1077 4.2605 0.9597 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 1.9983 3.1543 1.3072 30 1 0.5490 2.1253 1.3969 31 1 2.0699 1.5875 2.1492 32 1 3.8570 0.8799 -1.0113 33 1 4.0030 0.9835 0.7597 34 1 3.7314 3.3879 0.5323 35 1 8.5858 0.9645 -1.4032 36 1 4.5431 5.3221 -0.9570 37 1 5.3674 7.5010 -0.1594 38 1 7.3114 7.6050 1.3483 39 1 8.4265 5.5297 2.0644 40 1 7.5966 3.3502 1.2741 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055019333.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:37 Heat of formation + Delta-G solvation = -13.710980 kcal Electronic energy + Delta-G solvation = -17993.713624 eV Core-core repulsion = 15385.553635 eV Total energy + Delta-G solvation = -2608.159989 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.07502 -38.39974 -36.14659 -34.09880 -32.05608 -31.53386 -30.07255 -28.18407 -26.95965 -24.66353 -23.41971 -22.78175 -21.59950 -20.68258 -18.49956 -17.55414 -16.74865 -16.52121 -16.04071 -15.81426 -15.38884 -15.10778 -14.54937 -14.38561 -14.15971 -14.01518 -13.69892 -13.50707 -13.22250 -12.91751 -12.84406 -12.71036 -12.55030 -12.22631 -12.03158 -11.87743 -11.57556 -11.47465 -11.40175 -11.30058 -11.22048 -10.59388 -9.59440 -9.32692 -9.04460 -8.10933 -6.22465 0.72700 0.76088 1.36218 1.38077 1.49870 2.39440 3.05162 3.25612 3.61083 4.03549 4.13241 4.19329 4.28364 4.31512 4.42598 4.48499 4.58144 4.67934 4.73179 4.79694 4.89285 4.94057 5.00456 5.08563 5.14096 5.20114 5.23266 5.25811 5.30475 5.38927 5.45674 5.58362 5.60719 5.71235 5.78907 5.82365 6.08499 6.17544 6.36406 6.46666 6.92727 7.03390 7.44245 8.91558 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.014018 B = 0.008134 C = 0.005695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.947233 B = 3441.456693 C = 4915.713280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.118 4.118 3 C -0.082 4.082 4 H 0.070 0.930 5 C -0.142 4.142 6 C 0.082 3.918 7 N -0.680 5.680 8 C 0.241 3.759 9 H 0.001 0.999 10 C -0.493 4.493 11 H 0.050 0.950 12 C 0.013 3.987 13 N -0.919 5.919 14 Si 0.952 3.048 15 H -0.268 1.268 16 H -0.282 1.282 17 H -0.280 1.280 18 C -0.063 4.063 19 C -0.120 4.120 20 C -0.126 4.126 21 C -0.141 4.141 22 C -0.130 4.130 23 C -0.138 4.138 24 H 0.061 0.939 25 H 0.064 0.936 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.058 0.942 29 H 0.050 0.950 30 H 0.075 0.925 31 H 0.047 0.953 32 H 0.042 0.958 33 H 0.001 0.999 34 H 0.323 0.677 35 H 0.260 0.740 36 H 0.116 0.884 37 H 0.143 0.857 38 H 0.147 0.853 39 H 0.133 0.867 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.151 4.070 5.087 11.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.156 4.156 3 C -0.101 4.101 4 H 0.088 0.912 5 C -0.199 4.199 6 C -0.048 4.048 7 N -0.311 5.311 8 C 0.133 3.867 9 H 0.019 0.981 10 C -0.532 4.532 11 H 0.068 0.932 12 C -0.186 4.186 13 N -0.559 5.559 14 Si 0.778 3.222 15 H -0.192 1.192 16 H -0.208 1.208 17 H -0.206 1.206 18 C -0.065 4.065 19 C -0.139 4.139 20 C -0.144 4.144 21 C -0.159 4.159 22 C -0.148 4.148 23 C -0.157 4.157 24 H 0.080 0.920 25 H 0.083 0.917 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.094 0.906 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.019 0.981 34 H 0.141 0.859 35 H 0.069 0.931 36 H 0.134 0.866 37 H 0.161 0.839 38 H 0.165 0.835 39 H 0.150 0.850 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -9.102 3.981 4.429 10.877 hybrid contribution 1.221 -0.877 -0.133 1.509 sum -7.881 3.103 4.296 9.497 Atomic orbital electron populations 1.21757 0.94095 1.02056 1.02262 1.21521 0.97213 0.95434 1.01446 1.21119 0.93022 0.96849 0.99061 0.91153 1.21836 1.02034 0.99978 0.96056 1.21775 0.95194 0.90054 0.97787 1.60719 1.12258 1.10804 1.47300 1.18134 0.83847 0.89603 0.95147 0.98083 1.21226 1.06838 1.33105 0.92040 0.93156 1.25716 0.96807 0.95029 1.01015 1.70039 1.15829 1.36619 1.33405 0.85599 0.78055 0.77725 0.80870 1.19192 1.20775 1.20568 1.20600 0.95490 0.97082 0.93292 1.21033 1.00706 0.92072 1.00072 1.21401 0.97347 0.97536 0.98113 1.21306 0.96808 0.98428 0.99370 1.21290 1.00397 0.92269 1.00823 1.21067 0.97519 0.97815 0.99277 0.92017 0.91708 0.92700 0.93032 0.92328 0.93092 0.90613 0.93363 0.93935 0.98062 0.85874 0.93057 0.86551 0.83877 0.83503 0.84951 0.89022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 9.67 71.98 0.70 -2.23 16 2 C -0.12 -3.09 5.40 30.59 0.17 -2.92 16 3 C -0.08 -2.47 2.60 -10.80 -0.03 -2.50 16 4 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 5 C -0.14 -3.65 8.72 71.98 0.63 -3.02 16 6 C 0.08 3.29 4.94 86.30 0.43 3.72 16 7 N -0.68 -29.45 5.84 -499.37 -2.92 -32.37 16 8 C 0.24 12.28 2.34 43.42 0.10 12.38 16 9 H 0.00 0.08 6.73 -2.39 -0.02 0.06 16 10 C -0.49 -27.70 8.30 25.60 0.21 -27.49 16 11 H 0.05 2.89 7.81 -2.91 -0.02 2.87 16 12 C 0.01 0.76 5.46 84.66 0.46 1.22 16 13 N -0.92 -54.04 12.78 21.45 0.27 -53.77 16 14 Si 0.95 45.04 29.54 68.60 2.03 47.07 16 15 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 16 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 17 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 18 C -0.06 -2.95 4.65 -19.87 -0.09 -3.04 16 19 C -0.12 -4.87 9.08 22.27 0.20 -4.67 16 20 C -0.13 -4.17 10.05 22.27 0.22 -3.95 16 21 C -0.14 -4.43 10.05 22.27 0.22 -4.21 16 22 C -0.13 -4.68 10.05 22.27 0.22 -4.45 16 23 C -0.14 -6.17 9.67 22.27 0.22 -5.95 16 24 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.06 1.18 6.56 -2.39 -0.02 1.16 16 26 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.05 1.37 6.68 -2.39 -0.02 1.35 16 30 H 0.08 1.58 6.57 -2.39 -0.02 1.57 16 31 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.04 1.96 8.00 -2.39 -0.02 1.94 16 33 H 0.00 0.05 8.06 -2.39 -0.02 0.03 16 34 H 0.32 12.75 6.40 -89.70 -0.57 12.18 16 35 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 36 H 0.12 4.70 7.91 -2.91 -0.02 4.68 16 37 H 0.14 3.68 8.06 -2.91 -0.02 3.66 16 38 H 0.15 3.43 8.06 -2.91 -0.02 3.41 16 39 H 0.13 3.99 8.06 -2.91 -0.02 3.96 16 40 H 0.09 4.47 8.00 -2.91 -0.02 4.44 16 Total: -1.00 -62.38 324.48 3.46 -58.92 By element: Atomic # 1 Polarization: 26.85 SS G_CDS: 0.42 Total: 27.27 kcal Atomic # 6 Polarization: -50.78 SS G_CDS: 3.66 Total: -47.12 kcal Atomic # 7 Polarization: -83.49 SS G_CDS: -2.64 Total: -86.14 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -62.38 3.46 -58.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055019333.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.209 kcal (2) G-P(sol) polarization free energy of solvation -62.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds