Wall clock time and date at job start Mon Mar 30 2020 06:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.46591 * 2 1 4 4 H 1.09000 * 109.47089 * 55.00192 * 3 2 1 5 5 C 1.52996 * 109.47314 * 294.99804 * 3 2 1 6 6 C 1.52999 * 109.47067 * 174.99835 * 3 2 1 7 7 N 1.46900 * 109.47378 * 185.00074 * 6 3 2 8 8 C 1.46903 * 110.99973 * 179.97438 * 7 6 3 9 9 H 1.08998 * 109.47105 * 325.00211 * 8 7 6 10 10 C 1.50708 * 109.46547 * 85.00107 * 8 7 6 11 11 H 1.07991 * 120.00034 * 35.11144 * 10 8 7 12 12 C 1.37877 * 119.99765 * 215.10658 * 10 8 7 13 13 N 1.31516 * 119.99922 * 2.06183 * 12 10 8 14 14 Si 1.86794 * 120.00343 * 182.06531 * 12 10 8 15 15 H 1.48499 * 109.47252 * 89.99687 * 14 12 10 16 16 H 1.48498 * 109.47322 * 210.00372 * 14 12 10 17 17 H 1.48508 * 109.46915 * 329.99764 * 14 12 10 18 18 C 1.50695 * 109.47019 * 204.99565 * 8 7 6 19 19 C 1.38239 * 120.00251 * 314.00599 * 18 8 7 20 20 C 1.38232 * 119.99629 * 179.80985 * 19 18 8 21 21 C 1.38239 * 120.00193 * 0.39131 * 20 19 18 22 22 C 1.38229 * 119.99977 * 359.85477 * 21 20 19 23 23 C 1.38234 * 119.99561 * 134.26948 * 18 8 7 24 24 H 1.09007 * 109.46750 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47628 * 299.99604 * 1 2 3 26 26 H 1.08995 * 109.47489 * 60.00263 * 1 2 3 27 27 H 1.09001 * 109.47628 * 240.00396 * 2 1 3 28 28 H 1.08995 * 109.47489 * 119.99736 * 2 1 3 29 29 H 1.09005 * 109.46832 * 60.00075 * 5 3 2 30 30 H 1.08994 * 109.47246 * 179.97438 * 5 3 2 31 31 H 1.09000 * 109.47359 * 300.00223 * 5 3 2 32 32 H 1.09002 * 109.47363 * 305.00128 * 6 3 2 33 33 H 1.09007 * 109.47030 * 64.99685 * 6 3 2 34 34 H 1.00894 * 110.99610 * 56.04893 * 7 6 3 35 35 H 0.97005 * 120.00262 * 180.02562 * 13 12 10 36 36 H 1.07997 * 120.00067 * 359.97438 * 19 18 8 37 37 H 1.08004 * 120.00000 * 180.22470 * 20 19 18 38 38 H 1.08002 * 119.99568 * 179.83821 * 21 20 19 39 39 H 1.08004 * 119.99999 * 179.97438 * 22 21 20 40 40 H 1.07997 * 120.00213 * 359.97438 * 23 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 1 1.6052 1.9816 0.8418 5 6 1.6351 2.1266 -1.3073 6 6 3.5647 1.4446 0.1258 7 7 4.0443 2.8278 0.2462 8 6 5.5076 2.8687 0.3698 9 1 5.8483 2.0045 0.9400 10 6 6.1285 2.8413 -1.0032 11 1 5.6406 3.3414 -1.8266 12 6 7.3196 2.1777 -1.2079 13 7 7.8933 1.5346 -0.2145 14 14 8.1187 2.1922 -2.8962 15 1 9.0356 3.3558 -3.0000 16 1 8.8879 0.9369 -3.0907 17 1 7.0678 2.2955 -3.9404 18 6 5.9165 4.1329 1.0808 19 6 5.3576 5.3433 0.7152 20 6 5.7299 6.5023 1.3702 21 6 6.6669 6.4521 2.3853 22 6 7.2295 5.2425 2.7474 23 6 6.8545 4.0829 2.0950 24 1 -0.3633 -1.0278 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 0.5487 2.1252 -1.3969 30 1 1.9979 3.1544 -1.3071 31 1 2.0697 1.5877 -2.1492 32 1 3.8570 0.8803 1.0114 33 1 4.0029 0.9838 -0.7596 34 1 3.6030 3.2972 1.0226 35 1 8.7315 1.0680 -0.3584 36 1 4.6282 5.3830 -0.0802 37 1 5.2906 7.4474 1.0871 38 1 6.9596 7.3581 2.8952 39 1 7.9620 5.2034 3.5401 40 1 7.2939 3.1378 2.3780 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055019335.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:40 Heat of formation + Delta-G solvation = 0.415765 kcal Electronic energy + Delta-G solvation = -17997.036358 eV Core-core repulsion = 15389.488951 eV Total energy + Delta-G solvation = -2607.547407 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.45939 -36.93458 -34.54514 -32.18569 -30.54246 -29.98738 -28.78973 -26.44819 -25.21459 -23.08002 -21.93133 -21.30033 -19.94320 -19.39985 -16.50774 -15.88283 -15.01837 -14.69072 -14.63576 -14.12442 -14.04416 -13.80041 -13.35371 -12.75379 -12.56536 -12.27015 -12.12103 -11.81938 -11.75304 -11.50607 -11.44615 -10.98013 -10.92272 -10.85266 -10.40694 -10.26608 -10.19802 -10.14362 -9.80508 -9.61924 -9.49038 -8.53433 -8.04230 -7.69514 -7.22702 -6.04508 -4.07937 2.29299 2.31825 3.29890 3.36239 3.40205 4.39534 4.70539 5.03165 5.21579 5.26681 5.33218 5.56808 5.65914 5.66978 5.77729 5.83991 5.88516 5.92084 6.08009 6.18798 6.23409 6.29548 6.34033 6.44565 6.48167 6.52190 6.58031 6.61727 6.86240 6.90914 6.93143 7.02854 7.29187 7.32669 7.39906 7.73077 7.86086 7.92032 8.18509 8.23887 8.74065 9.04935 9.55432 11.00233 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.014193 B = 0.007979 C = 0.005804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.399045 B = 3508.397745 C = 4822.933918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.120 4.120 3 C -0.089 4.089 4 H 0.059 0.941 5 C -0.134 4.134 6 C 0.077 3.923 7 N -0.682 5.682 8 C 0.233 3.767 9 H 0.043 0.957 10 C -0.482 4.482 11 H 0.063 0.937 12 C 0.061 3.939 13 N -0.891 5.891 14 Si 0.894 3.106 15 H -0.281 1.281 16 H -0.287 1.287 17 H -0.273 1.273 18 C -0.037 4.037 19 C -0.109 4.109 20 C -0.134 4.134 21 C -0.152 4.152 22 C -0.131 4.131 23 C -0.113 4.113 24 H 0.047 0.953 25 H 0.049 0.951 26 H 0.055 0.945 27 H 0.061 0.939 28 H 0.057 0.943 29 H 0.038 0.962 30 H 0.067 0.933 31 H 0.049 0.951 32 H 0.013 0.987 33 H 0.075 0.925 34 H 0.311 0.689 35 H 0.261 0.739 36 H 0.120 0.880 37 H 0.106 0.894 38 H 0.104 0.896 39 H 0.106 0.894 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.697 1.618 3.034 9.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.158 4.158 3 C -0.108 4.108 4 H 0.077 0.923 5 C -0.191 4.191 6 C -0.053 4.053 7 N -0.311 5.311 8 C 0.126 3.874 9 H 0.060 0.940 10 C -0.521 4.521 11 H 0.081 0.919 12 C -0.141 4.141 13 N -0.529 5.529 14 Si 0.722 3.278 15 H -0.207 1.207 16 H -0.213 1.213 17 H -0.197 1.197 18 C -0.038 4.038 19 C -0.128 4.128 20 C -0.153 4.153 21 C -0.171 4.171 22 C -0.149 4.149 23 C -0.132 4.132 24 H 0.066 0.934 25 H 0.069 0.931 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.057 0.943 30 H 0.086 0.914 31 H 0.068 0.932 32 H 0.031 0.969 33 H 0.093 0.907 34 H 0.127 0.873 35 H 0.071 0.929 36 H 0.138 0.862 37 H 0.124 0.876 38 H 0.122 0.878 39 H 0.124 0.876 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -8.519 1.591 2.377 8.986 hybrid contribution 0.932 -0.297 0.014 0.978 sum -7.587 1.294 2.391 8.059 Atomic orbital electron populations 1.21801 0.96425 1.00861 1.01656 1.21553 0.95260 0.97193 1.01795 1.21177 0.96229 0.94921 0.98425 0.92264 1.21710 0.98832 1.01895 0.96684 1.21811 0.92447 0.90730 1.00276 1.60779 1.08457 1.14611 1.47285 1.18422 0.82789 0.90459 0.95734 0.93958 1.21001 1.05215 1.32259 0.93619 0.91900 1.25021 0.97336 0.94797 0.96964 1.69904 1.18288 1.33486 1.31240 0.86553 0.79471 0.77340 0.84440 1.20666 1.21329 1.19730 1.20735 0.94215 0.97237 0.91619 1.20994 1.00536 0.91856 0.99376 1.21003 0.98917 0.97817 0.97517 1.20823 0.99640 0.97036 0.99579 1.20983 1.00324 0.93178 1.00430 1.21111 0.97952 0.97940 0.96201 0.93400 0.93139 0.92564 0.92035 0.92471 0.94253 0.91438 0.93211 0.96926 0.90697 0.87329 0.92882 0.86203 0.87592 0.87774 0.87612 0.86455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.67 37.16 0.36 -1.32 16 2 C -0.12 -1.60 5.40 -26.73 -0.14 -1.74 16 3 C -0.09 -1.34 2.53 -90.62 -0.23 -1.57 16 4 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 5 C -0.13 -2.00 8.84 37.16 0.33 -1.67 16 6 C 0.08 1.47 4.87 -3.82 -0.02 1.45 16 7 N -0.68 -13.96 5.30 -109.18 -0.58 -14.54 16 8 C 0.23 5.59 2.34 -70.01 -0.16 5.43 16 9 H 0.04 1.14 6.73 -51.93 -0.35 0.79 16 10 C -0.48 -12.90 8.30 -34.44 -0.29 -13.18 16 11 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 12 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 13 N -0.89 -24.99 12.78 55.43 0.71 -24.28 16 14 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 15 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 16 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 17 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 18 C -0.04 -0.83 4.64 -104.63 -0.49 -1.31 16 19 C -0.11 -2.24 9.08 -39.58 -0.36 -2.60 16 20 C -0.13 -2.44 10.05 -39.58 -0.40 -2.84 16 21 C -0.15 -2.69 10.05 -39.58 -0.40 -3.09 16 22 C -0.13 -2.48 10.05 -39.58 -0.40 -2.87 16 23 C -0.11 -2.47 9.67 -39.58 -0.38 -2.85 16 24 H 0.05 0.48 8.14 -51.92 -0.42 0.06 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.61 6.56 -51.93 -0.34 0.27 16 27 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.04 0.50 6.57 -51.93 -0.34 0.16 16 30 H 0.07 1.10 7.75 -51.93 -0.40 0.70 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.01 0.25 8.05 -51.93 -0.42 -0.17 16 33 H 0.07 1.61 8.00 -51.93 -0.42 1.19 16 34 H 0.31 5.92 8.15 -39.30 -0.32 5.60 16 35 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 36 H 0.12 2.42 7.91 -52.49 -0.41 2.00 16 37 H 0.11 1.62 8.06 -52.48 -0.42 1.20 16 38 H 0.10 1.53 8.06 -52.49 -0.42 1.11 16 39 H 0.11 1.73 8.06 -52.48 -0.42 1.30 16 40 H 0.12 2.67 8.00 -52.49 -0.42 2.25 16 LS Contribution 326.74 15.07 4.92 4.92 Total: -1.00 -27.37 326.74 -9.41 -36.78 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -6.77 Total: 7.34 kcal Atomic # 6 Polarization: -23.93 SS G_CDS: -2.67 Total: -26.60 kcal Atomic # 7 Polarization: -38.95 SS G_CDS: 0.13 Total: -38.82 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -27.37 -9.41 -36.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055019335.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.200 kcal (2) G-P(sol) polarization free energy of solvation -27.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds